G60013 (LOC105906375)


Basic Information

Item Value
gene id G60013
gene name LOC105906375
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 49680642 ~ 49683666 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU80860
CCCAGTTACCCCTCCTACTTACTAGAAACCCCCCTCCCCATCACTGCAGTGCTCCTGGCTTTTGGAGGGTTATGGACAAGCACATGTGTAAAGTTAAGCTCCGCCTTTTCCCCATCCAATCAATGCAGCATCATAAATCACCCAAGTGCTCAGAGGAAATTGCTGTCTCCCCAGCTTTCATACCTCAGCCAACAGAGAGATGTCTGTGATTACTacccacccacccagagaaagcatgaccaactgtgctctctcggactctggctgctgatggagaagcaatTTGATCTAGGATTCAAACCCGTGATCCTTAGATCTTGGCCATGTGGACCAGCCAAAGCTCCTCATTTTGTCTGAGAAATCACAAAAATTAATATTCTAGCAATAACTTGAATCCTATATTCATATTGCATACATAATACCTTGTTTAGTAGAAGCAGTGTTAACAGTGACGTACCATGTTATAAAATGTCACACGTGTGTGCCTTTTATAAATGGAGGTTTCTAAATGCATTATGATACACTTGtacttaataatgtgttttatatgtcaCTACATGCTTTTGACAGGCATTATGTATGCTATATAGTGCATGATTTCTAAGATTTCTTTTACAAAATGTTTCTTAGGGGAACACTACAGCATTTCTAATCATACCAAACAACAATGAACCTCccattttgtttatattccatgCAGTCTGTGTTCAAACTGCTCTTTTATGTAGAGCAGCCTGCAGGGCATTACTGGATGACTATCTTCCCTCCAGACGGACAGCATAAATGTTGGTGGTACTTTTCCTCCAGTCAGGAAAGGGTTATGTTTCTCATTATCTGCGTTTCAAAGCATTGGTAGCAGCCCAGGTAGGTTGTTTAGGTAGATTTCTTGGTCGCAACATCATAAAAAGTCTGTTTTAAAGTGAAGGAACACTTTACATACACAGCTGACAAATGCAGGCGACATTCGAGAGATTTGGAAaacgcaactgatgtatcttTTTGTGGCGTTCCATTTCCCACCATTCTTTGTGTAAGTAGAATgtaaaaggaaaacaaacaatatgtttgtttttatattaatttatttcacaaAGAAAATGAGGTATTGAGAGTGGAGGGAACTTTCTAGTGACCTCACCACAAAGCTTCATAGGACAGTCCTTCCCAGGCTGTGCCGCCTACTTTGACTGCAGCCTAAGCTTTGAAACGCAGCTACTTCTCCACCTAGGATCAGATCACTCGAGACAGATTTTAATACCAAGTGTAAACAGGACCCTAATCACAGCCTTGTCCTGTAGGCCTAGTTAGAACGATGGGAACTGCTATGTTCTGAGGCTGGTTGTAATTCTTGCTTATTGCTGTTTgacttttgccttttttaacaACAGTTTGATCAAAGCCCGGCAGGTCATATAACTGAGAAGACACAAGGCCATAACAACACCTAGCAACAGTGCTAACACGTCCACATTGTGATATTCATACCAGGACAATTTGTAGGACTTGGTACGCAAATGTGCCGCACCTTTGTGCCTTATAATATACTCCAGCCAGAAGATGGCAGTATCCATCGGTTTCAGTGGTGTGTCGTGATGCAACTGCGACATCTTACGCATTTTTTCCCTGTAGGGTTTCTTTTCGTCCAAGATATCCGTCAATGCTTGGGTTAGTGAGTCCACATCCAGGGATGTAACTTCCAGTACTTTGGCAACCCCTCTGGCCTCAAGGCGTATCATGTTGTCGAACTGGTCAAAGATCAGTGGTATTCCCAGGACTGGGACTCCATGGTAGATGGCCTCGTAGATACCATTGGTACCGCCGTGTGTGATGAAAGCTTTGGTTTTTGGATGACCCAGAAGGTCGTTCTGTGGAAGCCAGTCGAcaatcagtgtgtttttgccaagtgtGGAAGGCTTCGGCCCCAGGTTTCTCCACACCACCTTTTGGGGCAGACGAGCGAAAGCAGAAGCGACAATTTCTGATATCTCTGGTCCAAGGCTTCCGAGCAGTGTGCCAAGAGACATCACCACAATGCCATGCTCCCCTGAGCTCTGCACAAACCTCTCTAAGTCAGCAGGCAAAGGCTTAGAAGGCTTGCACTGGAACCCTCCCATGTAGACCACGTTTGGCATCGTAGGCCGAGGAAACTCGAACACAAAGTCAACTCGCATGAGCCACAGGTCAGCTCCCTGTATAAGGGAGTAGATATTGGAATCTGGGTCTATAAATTTGCTGATGACATCCTGATAAAGTGGCCTGGTGGTGATGTGGTCGATGTACTGGCCGATTCCATAGTGCAAAAGGTTCTTCAGTCTGTTCTTGAAAGTCATTTTATCGGTGACTTGCGACCCAATCGTCGGGATGTATGAAAGAGGAGACGGCGCGATTGAAAAGTGTCCATCTCCATTTGTTATCCAACGAACGTTGAATACCATTGGTAGACCCAAGTATTTACCCAACACTACTCCACCTCCGAAGCCAGGATCTGTCAGGAGCAAATCGTACTTGGCGCCTTTCAGTTTCCTCACAAGTCTTTTATCCTCCAAGATGGTCCTCACCATTTCAGCACTTGCCCTGTGAGCCTCCAGCAGCAGATTGATGGTCTCTTGCTGGTAAGCGATGAACGAAAGAATGGACCCTTCTCCTCTCCGGATGTCAATGTTCCTCTTCAAGAAGGACGCCATGAACTCAGGGTTCTCCAGGTGGCTAGCATGGTTGACCGGTACAGTAAGAGAAGTGTAGTGTGGAGTTTTCTCTGGAATGTACCAACTTGTGGAGGAACGGACTACAGTCAGCTCATGACCTCGCTGGTGAAGCTCTTTAAGCACAATGTTCATGTTGAGCCAGTGGCTGCCATCCACCGGGTACACCAAGATCCTGCCTGCTCTGGTGAGAGGAAGTTGGATCCACAAGAGGGCAGTGAGAAGCAGGAGCATGGGGCAAGGGAGGAGCATCGTCTGAAAATGGAAACAGGTTTTT

Function

NR:

description
PREDICTED: UDP-glucuronosyltransferase 2A1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80860 True 2979 lncRNA 0.45 2 49680642 49683666

Neighbor

gene id symbol gene type direction distance location
dedd dedd,LOC108411641,LOC106572035 coding upstream 4033 49668729 ~ 49676609 (+)
LOC103028085 LOC103028085,LOC108411637 coding upstream 14240 49662806 ~ 49666402 (+)
LOC103028393 bgna,LOC108265721,LOC107665058,LOC107700508,LOC107755294,LOC107757994,LOC107550196 coding upstream 19103 49649559 ~ 49661539 (+)
LOC103027985 LOC108265720 coding upstream 37295 49627094 ~ 49643347 (+)
LOC103028705 LOC103028705,LOC108265463,LOC108411640,LOC105890655,LOC108438067,LOC105006799,LOC103466989,LOC105026930 coding upstream 67162 49608599 ~ 49613480 (+)
LOC103022925 atp2b3a,LOC107755305,LOC107699155,LOC107758015,LOC107603076 coding downstream 9396 49693062 ~ 49747956 (+)
LOC103024391 NA coding downstream 93924 49777590 ~ 49781481 (+)
LOC103027656 NA coding downstream 100793 49784459 ~ 49791473 (+)
LOC103024709 NA coding downstream 113607 49797273 ~ 49810079 (+)
LOC103027051 NA coding downstream 249099 49932765 ~ 49968192 (+)
G59960 NA non-coding upstream 133661 49544649 ~ 49546981 (+)
G59996 NA non-coding upstream 176919 49503517 ~ 49503723 (+)
G59986 NA non-coding upstream 201285 49479085 ~ 49479357 (+)
G59976 NA non-coding upstream 220136 49459449 ~ 49460506 (+)
G59972 NA non-coding upstream 225539 49454429 ~ 49455103 (+)
G60017 NA non-coding downstream 71617 49755283 ~ 49755595 (+)
G60034 NA non-coding downstream 255850 49939516 ~ 49990321 (+)
G60041 NA non-coding downstream 317243 50000909 ~ 50001120 (+)
G60047 NA non-coding downstream 341823 50025489 ~ 50026007 (+)
G60059 NA non-coding downstream 397970 50081636 ~ 50085033 (+)
G59961 NA other upstream 243029 49423516 ~ 49437613 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other upstream 310391 49322278 ~ 49370251 (+)
G59806 NA other upstream 682171 48998160 ~ 48998471 (+)
G59782 NA other upstream 801019 48870167 ~ 48879623 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other upstream 2019285 47623554 ~ 47661357 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other downstream 183952 49867618 ~ 49990417 (+)
LOC103045694 NA other downstream 955828 50639494 ~ 50652906 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other downstream 1592534 51276200 ~ 51286140 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other downstream 1703904 51387570 ~ 51409262 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other downstream 2081413 51765079 ~ 51826103 (+)

Expression


Co-expression Network