G60017


Basic Information

Item Value
gene id G60017
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 49755283 ~ 49755595 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU80864
actgcctttctctataaaaacacacacagtgacggCAGAACCCGACTTTTCAATGAAACAGCAGCACGTCTGATATTCTGAAGCATCACCACTGGACTAAACACTGATCTTTAGATCAGACACACCCACTCTAACCTGGGTATGAGAATAGACCTGACACCGTTTCAGCCCAGATTTACAGAAAACTCAAATTGCACTTTTTATGTACTTTTTCTTAAGCACTTTAGATGcccTTGTTTTTAGGCTACTTTaagtggaaatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80864 True 284 lncRNA 0.37 2 49755283 49755595

Neighbor

gene id symbol gene type direction distance location
LOC103022925 atp2b3a,LOC107755305,LOC107699155,LOC107758015,LOC107603076 coding upstream 7327 49693062 ~ 49747956 (+)
dedd dedd,LOC108411641,LOC106572035 coding upstream 78674 49668729 ~ 49676609 (+)
LOC103028085 LOC103028085,LOC108411637 coding upstream 88881 49662806 ~ 49666402 (+)
LOC103028393 bgna,LOC108265721,LOC107665058,LOC107700508,LOC107755294,LOC107757994,LOC107550196 coding upstream 93744 49649559 ~ 49661539 (+)
LOC103027985 LOC108265720 coding upstream 111936 49627094 ~ 49643347 (+)
LOC103024391 NA coding downstream 21995 49777590 ~ 49781481 (+)
LOC103027656 NA coding downstream 28864 49784459 ~ 49791473 (+)
LOC103024709 NA coding downstream 41678 49797273 ~ 49810079 (+)
LOC103027051 NA coding downstream 177170 49932765 ~ 49968192 (+)
b3gnt3 b3gnt3 coding downstream 214516 49970111 ~ 49987113 (+)
G60013 LOC105906375 non-coding upstream 71617 49680642 ~ 49683666 (+)
G59960 NA non-coding upstream 208302 49544649 ~ 49546981 (+)
G59996 NA non-coding upstream 251560 49503517 ~ 49503723 (+)
G59986 NA non-coding upstream 275926 49479085 ~ 49479357 (+)
G59976 NA non-coding upstream 294777 49459449 ~ 49460506 (+)
G60034 NA non-coding downstream 183921 49939516 ~ 49990321 (+)
G60041 NA non-coding downstream 245314 50000909 ~ 50001120 (+)
G60047 NA non-coding downstream 269894 50025489 ~ 50026007 (+)
G60059 NA non-coding downstream 326041 50081636 ~ 50085033 (+)
G60060 NA non-coding downstream 337517 50093112 ~ 50093477 (+)
G59961 NA other upstream 317670 49423516 ~ 49437613 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other upstream 385032 49322278 ~ 49370251 (+)
G59806 NA other upstream 756812 48998160 ~ 48998471 (+)
G59782 NA other upstream 875660 48870167 ~ 48879623 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other upstream 2093926 47623554 ~ 47661357 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other downstream 112023 49867618 ~ 49990417 (+)
LOC103045694 NA other downstream 883899 50639494 ~ 50652906 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other downstream 1520605 51276200 ~ 51286140 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other downstream 1631975 51387570 ~ 51409262 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other downstream 2009484 51765079 ~ 51826103 (+)

Expression


Co-expression Network