LOC103025235 (LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028)


Basic Information

Item Value
gene id LOC103025235
gene name LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 49867618 ~ 49990417 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU80880
aacacacgcacacacacacacacacaatcagtgTGTTCCCTCTCAGTCTGCTGCAGCTTCTTCACATTAAATAaggaaaatacaataaacacactCCCTCAGAGTCACTTCAGCATTTAGGATTGTgattcagacacacacatatatacacacacacacacacacactctctctctctgcaggtcaCAGAGCTTTAGAAAGTGAGAGAGTCAGTGAGACAAAAGCAATGTTAATGAAAAGTTCATTGATGCATATCAgtctgtgtgtggaggggggctGGTAGTCTCTTGGGTGCTTTGCTGGTGCTTCTTCCACTTCATTAGCTCATCTCTCAGGTCAAGCCCACAGTATGGGCGAGGCTGCTGGCCCACACCGTGGTCAGATATGtaggtgtgtatatgtgtgtgtgtgtgtgtgtgtgtgtgagggctctactctgtgtgtgtgttctgcaggtAAGTGAGGATGTGCTGGATCTTGACGAGTCTCTCTTTCAGGGTGGTCATGGAGAGCAGTGACAGCTGGTACCGAGGGTCCACCGGCAGCACAGCCAGCAGCCACCAGCAACACGCCGGACCATTAGGGGTCGCC
>TU80883
ttaattttcaattcagttttatttttttaatttaaaattgacAACATAAATATTCAAGCAAAGAGCACAGttgtgtaaaaaacaaaaaacaataacaataatcgCCCCAAAGACAAACTGACTTCATACAGCTGAGTCATTCTTTCacaaactccacacacacacacacgcgcacacacacacacaaacacatacacacaggaaTTTGGCCGCAAGGCGACGGaagaaattaaaacactgaattattattcaggaataataaaaaacaaatgcaaaaaccTCCAAGCTAGTGCATTATGCCACATAAGCAGAATGCAGAGATTTTAATAAGGCAAAGTTAGTGCGTCTGCACGCCGAGCCAGCGCACAGCGAGATCACAGAGTACTGCTCCCAACATTctgccaaaatatatatttatatatatatatatatatatatatg
>XM_007236964.3
ggcagTGAAGTCCAGCAGTGAAGAAGAGCATCTACTGAAGCCAGTTCACACCTCAAACATCTAAAGCTACAACTTTACTCTGAGGcatgtCTCAGAGGAGCAAAGCATCCTCAAGTCAGAGCTCTTCCTCTCGCCCCTCCTCTGCCTCGGACAACCCCCCTCTGCGCTCGGCTCTGAAGCACGGCTCTAAAGACTCAAAGGACTCTAAAGACTCTAAAGGCTCCCGCCGCCGCCGCAGCCTAACCCAGGGTTCTGTCTACCTGCCCTACCTCAATGCATTGTTCGGACAGGACAGGGAGCTGATGCCGGAGGAGTTGGATGagCTTCAGCTGGCCTTTAAAGAGTTCGACTATGACCAGGATGGATACCTGCACTATAAGGACGTGGCCGACTGCATGAGGACCATGGGCTACATGCCCACTGAGATGGAGCTGATCGAGATCATTCAGCAAATTAAGatgaagtggggTGGTCATGTAGATTTTGATGatttctgtgagctgatgggTCCCCGGATGCTGATGGAGACGGCGCACATGGTGGGGCTGAGGGAGCTTCAGTGTGCTTTTAAACAGtttgaCTGTAACGGTGATGGGCGAATCAGTTTTGATGAGCTGAAGGAGTCGATGAAGACTCTGCTGGGGGAGAAGCTGAAGAAGGGCGAGCTGGAGGAGATTCTGTCTGATATCGACCTGAACGGAGACGGAACCGTCGATTTTGATGAGTTTGTGATGATGCTGTTGGCCCGATAGCCGCGTGCCACAGGCCTCCTGCTTTAAAACAATCACTTATATTAAGCTTTAATCTTTAATGTGCTGAGAATATATTGACTATAGTGTGCATTTACTATTCATTTGCTGTGTATAATTAATGATGAATGTTTATGAAATAAAGTTGATAAAGtgcttaaaacttaaaatggaAAGTGTTGAGTTTGCTTTGTATAGAATCAGCAGGAGATGAAAAGTTTAATTCTGGCAGCGCCCGGTGGACAGATCCAGTAGCGCAGGGTGTGAGTCAGTGAGTGGggcatttaattaattttcaattcagttttatttttttaatttaaaattgacAACATAAATATTCAAGCAAAGAGCACAGttgtgtaaaaaa

Function

NR:

description
calcium-binding protein 2-like

GO: NA

KEGG:

id description
K23531 CABP1_2_4_5; calcium-binding protein 1/2/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
TU80880 False 591 lncRNA 0.50 2 49867618 49918681
TU80883 False 441 lncRNA 0.35 2 49916651 49990417
XM_007236964.3 True 1119 mRNA 0.46 8 49893343 49916732

Neighbor

gene id symbol gene type direction distance location
LOC103024709 NA coding upstream 57539 49797273 ~ 49810079 (+)
LOC103027656 NA coding upstream 76145 49784459 ~ 49791473 (+)
LOC103024391 NA coding upstream 86137 49777590 ~ 49781481 (+)
LOC103022925 atp2b3a,LOC107755305,LOC107699155,LOC107758015,LOC107603076 coding upstream 119662 49693062 ~ 49747956 (+)
dedd dedd,LOC108411641,LOC106572035 coding upstream 191009 49668729 ~ 49676609 (+)
ccdc124 ccdc124,LOC107744596 coding downstream 81902 50072319 ~ 50091417 (+)
kcnn1 kcnn1b,LOC108413565,LOC107598990,LOC107589798 coding downstream 121050 50111467 ~ 50193499 (+)
LOC103026155 LOC108413566 coding downstream 209649 50200066 ~ 50246511 (+)
LOC103021573 LOC108414650 coding downstream 257292 50247709 ~ 50272906 (+)
spag17 NA coding downstream 345132 50335549 ~ 50368567 (+)
G60017 NA non-coding upstream 112023 49755283 ~ 49755595 (+)
G60013 LOC105906375 non-coding upstream 183952 49680642 ~ 49683666 (+)
G59960 NA non-coding upstream 320637 49544649 ~ 49546981 (+)
G59996 NA non-coding upstream 363895 49503517 ~ 49503723 (+)
G59986 NA non-coding upstream 388261 49479085 ~ 49479357 (+)
G60041 NA non-coding downstream 10492 50000909 ~ 50001120 (+)
G60047 NA non-coding downstream 35072 50025489 ~ 50026007 (+)
G60059 NA non-coding downstream 91219 50081636 ~ 50085033 (+)
G60060 NA non-coding downstream 102695 50093112 ~ 50093477 (+)
G60065 NA non-coding downstream 283259 50273676 ~ 50276276 (+)
G59961 NA other upstream 430005 49423516 ~ 49437613 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other upstream 497367 49322278 ~ 49370251 (+)
G59806 NA other upstream 869147 48998160 ~ 48998471 (+)
G59782 NA other upstream 987995 48870167 ~ 48879623 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other upstream 2206261 47623554 ~ 47661357 (+)
LOC103045694 NA other downstream 649077 50639494 ~ 50652906 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other downstream 1285783 51276200 ~ 51286140 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other downstream 1397153 51387570 ~ 51409262 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other downstream 1774662 51765079 ~ 51826103 (+)
LOC111192705 pim2,LOC107601747 other downstream 1837937 51828354 ~ 51832271 (+)

Expression


Co-expression Network