G60034


Basic Information

Item Value
gene id G60034
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 49939516 ~ 49990321 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU80896
ttgtaaaccatttataaaccctttataaaggtagtcatattttaaagtggtacctatattttttactattaacaGAGTAGTAATCAAATTTACAGTGAAGCCAGTGATGATTGAGCAAATTCTTGATGCTTCCTGGTGAAGATATCATCATTAAGAGCCAAGTATGTAGTCAAGAATGTTAACTGGAAGAATGTGATAATTTAtagtttgttatttttcaaaGGATCATTTTGCAACTTTAAAattctctgtaaaatgcaaacTAGTTAGCAAACTTTTAAGCCTTTGCAGAACAAGTGCACATATTTTTAGATTATAACGGACACTATGCTTGACTCAATTGACACAATTCTGTGTAACTTTAGACGTTcaagtgagtgtgtaagtgaggaATATGGAACTAGTGGTTTAATCACTATATCAGCGTATCATTGAAGTATATTTAAGCTACTGTAACTAGTAAGTGAAATGGCTGCCAAGCCAAGCTGTAGGTAAGTGtcaaactatttatttatattttatcatttgcACTGTTAATAAAGCAAACTCGGAAGTTTaggttcccttttttttttttgtgaggggGAGGgaggtgtaatgtaaagcttAAAACAAATGCATCCGAGAGGCTGGTATGAAGTACTCTCCCCCAAAAAAGGAACAAAGCAAACTTCAACCCAGAACCGTAAAGTTCTGCTGGTTACCAATtgtaaacaatgtttttaataagcttcttgctcatttttaaagttattaatgcctcaatTTAAACGTCAgtgctctctggattctagcaaggaggtgtggagctactttgagcctggatgtCGGTGTAAAGAatgatttattggggcaaaactTGCCACGATACAGCCGTTGTGCAGATTgttgggcaaaaagcacaaaataactggacctcagaaagctgtaggagagtggaggtgtgctattcaacaaagataatattttttacatctgagttctcctttaactatGTATGTTAAAGCTTCggcatactgttttttttagggaCCATGTTTTTATGACTTTGTAAAAGGATTATAAAAGGTTATAAAATTGAGTATAACACAAACAAGTCACAAAGTCATGCTGAAGCACATGGCAGCTGGGAAAATTCTtcgtaaaaataaagttttagcttttgtttttacacttcAGTTAATGCACATGTTGTAATAGCAAGTCATGGCACATAACAGCACcgcttattttttaatcttttgttTAATGAGTGACCATAGCCTGCCTTAACTTCCTGTAATTCTCTAATtggtctgaaatttaaaaccGTGCAAAAAAAGTGTGTTCACACTGCAGAAGTTAACCAGACCATGGTTCTGCTAACCCTAAcagagaccacctcttttgagCGGACCAAATTTTCACACTTCTCATACTTGGTATTTCTGTTTGCACCAAACTAGACCAAAAGTCAGAAAGTCTGAACCAAAAAATGGCAGGAATGAATGTAACCTAAATGTGGAAACTGATTGCATGTGAGCTGATTGGAAAGATCTGAAAGTTACTAAACTGAAAATGAACAGAACTAATGACTTTGCTCCAATAACCCAAAGCGATTCATGAATGTACAGTACGTGTGTTGTCTTGGAACTTAAGACAACAGTATACAGTAgaatgtatattctatgttgcacaattgtattgttttcatttcatttcatttcatataTGAAGATCACCATCTAATTTGTTAAGGTTTAGGAttaggggattaatgtggaggacaaaaacttttttactctttactacGTGGTtttatatgtgtcccttaattgtttcaatatagaaaatatattaaataaagaattaaagaaaaacattgaatgataaggtgtgtccaaactaagGTGTGTCCAGACTGGTACTctatatgttattatttaacatgcctgcatattttttttcttctgtagaACACAAACCAGTAAGGCCCACACTgtcaaacaaatacatttattttattaactgaACAAACTGTTATTTGGTATAGTGGGGGATTCATATGATTGtacactgtgtttatata
>TU80898
cctttatgaaggtagtcatattttaaagtggtacctatattttttactattaacaGAGTAGTAATCAAATTTACAGTGAAGCCAGTGATGATTGAGCAAATTCTTGATGCTTCCTGGTGAAGATATCATCATTAAGAGCCAAGTATGTAGTCAAGAATGTTAACTGGAAGAATGTGATAATTTAtagtttgttatttttcaaaGGATCATTTTGCAACTTTAAAattctctgtaaaatgcaaacTAGTTAGCAAACTTTTAAGCCTTTGCAGAACAAGTGCACATATTTTTAGATTATAACGGACACTATGCTTGACTCAATTGACACAATTCTGTGTAACTTTAGACGTTcaagtgagtgtgtaagtgaggaATATGGAACTAGTGGTTTAATCACTATATCAGCGTATCATTGAAGTATATTTAAGCTACTGTAACTAGTAAGTGAAATGGCTGCCAAGCCAAGCTGTAGGTAAGTGtcaaactatttatttatattttatcatttgcACTGTTAATAAAGCAAACTCGGAAGTTTaggttcccttttttttttttgtgaggggGAGGgaggtgtaatgtaaagcttAAAACAAATGCATCCGAGAGGCTGGTATGAAGTACTCTCCCCCAAAAAAGGAACAAAGCAAACTTCAACCCAGAACCGTAAAGTTCTGCTGGTTACCAATTGGGTCACTTCTTATTGTTTCCCAGAACCAGACCTTTCATCTCCACAGCCCTTCttagttaaaggagaactccggtgtaaaattgactttgggtgtagtaaaacatgataaaaagtacttaccttcgCTCTCCTAtagctttctgagatacagtaattttgtgctttttgcccagcactctgtacaacagCCATACAGACTCCAagtatccaggctcaaagtagctccacacctccttgttagaatccggagagccctgattGTTACATTGAGGCaatagtaacttaaaaagtgcacaaaaagcttattaaaaaatactatttacaTCCCATATTGCTTCTTTGTAGCTCTGGGAACCgtcatcactgtactgataatgacattgacatatatacatagattccgcatagcctgcctcccaGCGTCGGCGGCTACTACGCTATGTGAAgtctatatgtgtatatgtctatgttattatcagt

Function

NR:

description
PREDICTED: dolichol phosphate-mannose biosynthesis regulatory protein-like

GO: NA

KEGG:

id description
ko05200 Pathways in cancer
ko05217 Basal cell carcinoma

RNA

RNA id representative length rna type GC content exon number start site end site
TU80896 True 2068 lncRNA 0.34 2 49987747 49990321
TU80898 False 1171 lncRNA 0.37 2 49939516 49988936

Neighbor

gene id symbol gene type direction distance location
LOC103024709 NA coding upstream 129437 49797273 ~ 49810079 (+)
LOC103027656 NA coding upstream 148043 49784459 ~ 49791473 (+)
LOC103024391 NA coding upstream 158035 49777590 ~ 49781481 (+)
LOC103022925 atp2b3a,LOC107755305,LOC107699155,LOC107758015,LOC107603076 coding upstream 191560 49693062 ~ 49747956 (+)
dedd dedd,LOC108411641,LOC106572035 coding upstream 262907 49668729 ~ 49676609 (+)
ccdc124 ccdc124,LOC107744596 coding downstream 81998 50072319 ~ 50091417 (+)
kcnn1 kcnn1b,LOC108413565,LOC107598990,LOC107589798 coding downstream 121146 50111467 ~ 50193499 (+)
LOC103026155 LOC108413566 coding downstream 209745 50200066 ~ 50246511 (+)
LOC103021573 LOC108414650 coding downstream 257388 50247709 ~ 50272906 (+)
spag17 NA coding downstream 345228 50335549 ~ 50368567 (+)
G60017 NA non-coding upstream 183921 49755283 ~ 49755595 (+)
G60013 LOC105906375 non-coding upstream 255850 49680642 ~ 49683666 (+)
G59960 NA non-coding upstream 392535 49544649 ~ 49546981 (+)
G59996 NA non-coding upstream 435793 49503517 ~ 49503723 (+)
G59986 NA non-coding upstream 460159 49479085 ~ 49479357 (+)
G60041 NA non-coding downstream 10588 50000909 ~ 50001120 (+)
G60047 NA non-coding downstream 35168 50025489 ~ 50026007 (+)
G60059 NA non-coding downstream 91315 50081636 ~ 50085033 (+)
G60060 NA non-coding downstream 102791 50093112 ~ 50093477 (+)
G60065 NA non-coding downstream 283355 50273676 ~ 50276276 (+)
G59961 NA other upstream 501903 49423516 ~ 49437613 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other upstream 569265 49322278 ~ 49370251 (+)
G59806 NA other upstream 941045 48998160 ~ 48998471 (+)
G59782 NA other upstream 1059893 48870167 ~ 48879623 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other upstream 2278159 47623554 ~ 47661357 (+)
LOC103045694 NA other downstream 649173 50639494 ~ 50652906 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other downstream 1285879 51276200 ~ 51286140 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other downstream 1397249 51387570 ~ 51409262 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other downstream 1774758 51765079 ~ 51826103 (+)
LOC111192705 pim2,LOC107601747 other downstream 1838033 51828354 ~ 51832271 (+)

Expression


Co-expression Network