G60041


Basic Information

Item Value
gene id G60041
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 50000909 ~ 50001120 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU80905
aaggaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgctaacccggattgtatccaaaaaacataaaaccacggctgatcaaatcacggcagaattcaatgtgcacctcaactctcctgtttccaccagaactgtccgtcagaacaataaattattgtggtctaaaaccaggtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80905 True 212 lncRNA 0.45 1 50000909 50001120

Neighbor

gene id symbol gene type direction distance location
b3gnt3 b3gnt3 coding upstream 13796 49970111 ~ 49987113 (+)
LOC103027051 NA coding upstream 32717 49932765 ~ 49968192 (+)
LOC103024709 NA coding upstream 190830 49797273 ~ 49810079 (+)
LOC103027656 NA coding upstream 209436 49784459 ~ 49791473 (+)
LOC103024391 NA coding upstream 219428 49777590 ~ 49781481 (+)
ccdc124 ccdc124,LOC107744596 coding downstream 71199 50072319 ~ 50091417 (+)
kcnn1 kcnn1b,LOC108413565,LOC107598990,LOC107589798 coding downstream 110347 50111467 ~ 50193499 (+)
LOC103026155 LOC108413566 coding downstream 198946 50200066 ~ 50246511 (+)
LOC103021573 LOC108414650 coding downstream 246589 50247709 ~ 50272906 (+)
spag17 NA coding downstream 334429 50335549 ~ 50368567 (+)
G60034 NA non-coding upstream 10588 49939516 ~ 49990321 (+)
G60017 NA non-coding upstream 245314 49755283 ~ 49755595 (+)
G60013 LOC105906375 non-coding upstream 317243 49680642 ~ 49683666 (+)
G59960 NA non-coding upstream 453928 49544649 ~ 49546981 (+)
G59996 NA non-coding upstream 497186 49503517 ~ 49503723 (+)
G60047 NA non-coding downstream 24369 50025489 ~ 50026007 (+)
G60059 NA non-coding downstream 80516 50081636 ~ 50085033 (+)
G60060 NA non-coding downstream 91992 50093112 ~ 50093477 (+)
G60065 NA non-coding downstream 272556 50273676 ~ 50276276 (+)
G60121 NA non-coding downstream 475799 50476919 ~ 50566228 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other upstream 10492 49867618 ~ 49990417 (+)
G59961 NA other upstream 563296 49423516 ~ 49437613 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other upstream 630658 49322278 ~ 49370251 (+)
G59806 NA other upstream 1002438 48998160 ~ 48998471 (+)
G59782 NA other upstream 1121286 48870167 ~ 48879623 (+)
LOC103045694 NA other downstream 638374 50639494 ~ 50652906 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other downstream 1275080 51276200 ~ 51286140 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other downstream 1386450 51387570 ~ 51409262 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other downstream 1763959 51765079 ~ 51826103 (+)
LOC111192705 pim2,LOC107601747 other downstream 1827234 51828354 ~ 51832271 (+)

Expression


Co-expression Network