G60065


Basic Information

Item Value
gene id G60065
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 50273676 ~ 50276276 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU80943
ggtctcttttattttaattgtagaGTTGATGTTtaaacaggtgtgttttgtgGCTGATAGCTCAGTAAAAGTGTGTATGatgactttttaaaaggtaaaattttatataaaaaacacacattatgtaaaatttaaaaacagatatatgaaaaatacagaaatgcacCAAAAGACAAATGTAGAAAATGGTCTCCAAAAACAGCCCGACCATATTTAACCCCTTAGTGTTTCTAAACAGTCTAAAGTAAcatatttattctttatatttacaGTCCATGGAAAATAAACAGTGTACACAGATGTATATGATCTTAGTGTTGATGCAGAAAAGGCTTGTTCTGTTTTACTTAGTACGGTATATGTGATATTTgatgtgtaaaaaaagaaagctttCTTTGAATGGtggctatatatataaacattattacacagtaacacacacgcATCAGCACAGAATAATGTGTAAAATGGAATGGACTTAAAGAGAATATCAGTATTAGACATGGACCATtaaagattatattttctgtagtaacatAACATGACAGGATGTCagatattataaaaacatgCTAAGTTTAAGCAATGTatgctcttgtcagcagagcttaaTTCAGTATGTTCTTAGTTGAACTGTGCAGTACATCATCTGCCCACTGCCAATCAcctagtcccatttccacacccagGGTTGCCCGATATAGACAACACATGCAGTGTGCTGCATCCATGAAAGAGGGCGAAAAGGCCGTTtatcagtaaggttgctaaccatagctggcTAATTTACCACCTCCAGTAGTGTAGCAGAGGCAGGCATTTTGGacactaaaatgtatatatttattgatcagCTACAGTATAAGAACTTGTCACTTTGGTAACCCCCGAGAGCTTTGCATAAGCGGGTGGGGGAGAAAACTCTATCCAGTGTTTGTAAAAATGTGACTCCTGTAGCTATTTCACACACTCGCATTTATGACTGATTGTTCCTTAAGATTTAAGTATTGGTACTGGACTAGATTTTAGTATCAGTATTGGATTTTACAAAAAATTCTTAGAATTAGTATTGAAAAATATTAATAGGTTTCAGTACCAGCATCAGAGAATGCTCAGGGTTTCACTAATATTGGTATCGGTAGGAACAAAGATATATTGTTCTATGTCTAATTAGGCTATAATTTgctatatagttatatatagtaGTGTGCAGTCTAGTACCGTATTGTGGTGATATTAAAAGGGGTTTATTGTATTTCTGATAACATCAATGCAGGAGCTCCCCTTATTCAGTGTGTCTATGTGTCTCAGTGTAGGCAACCTTTGAAAAAGTGTGGATACAGACAATGTCAATATAAAACCCTGAAAATATGTACATTAAAATAACAGCAGAAACATATTAGAGATAACAACATTCAAACAGTAACTCAAGCAACAGCTGAGTTCCAGAAGACTGTctgtaaaacatatatacaccCCTCCTGtagtaatcacacacacacacactcagtaaaGCACAAACGGTTTTGGCACAGAAAGTCTAATATTCCAATactctattttatgtttttacatttagtgTAAATACAGGCCTGAATGTTTGAAGGTGTTTTCAAACTAGTATTTTTTTCTGGACCTGGAAACCCTTGATCTGtgagttcagtttgtttggtaaagtgtGAAAGCTGTTGGTGGTCTGGGTTTCGTTGTAAGCAGACTCTAGTTCAGTTCTGaattcatttataataaaaaatacaaatgaccAAAGCTTTTATGCTCCTCCAAGCAGTAAAATAACACAGATTTGCTCAGTCAATCCACGGTTTATAAGGAGTTCCTGTGTGTAAAAGCAAACTAGTGATAATGATCCCCTCTGCCAAACCAGCCCAGAATCAGTTCTGAGCACAAACCGCTTTATTTGGGACGTGTGAAAATGAGACACAACCCACTGACTGATATAACTGGTGGCTAGTAGCCAAAATCAGCCATCAGGTGGCGCTATGTGCAAGTTTATATTAGATGATGAACAGTTGCGTGTTCTCCAGAACTACAGAATACACACACAGGGGaactgagagagtgtgtgttctcAGTGTTCAGAGTGGTGTCAGATCAGTTACTCAGAGCTCAttactgttcattttattcagtgtAATGATATAGCGCCACTGATATTCAATATGGATCAGAAGATAAGATTGAATGTAGTTTCTTGTGGTCTGGCATTGTCAGATGTGGTTAAATGTGGTTAGACATGATCAGATGTGgtcatatacagtaaaatgtgaTTAGATGTGGTCAGATATAGTGAGTTATGGGCAGATGTGGCCAGATTTGGTCAAATTTTGGTCAGTTATGGTCAGATAAATGCAGATGTGGTCAGATGTGGCGCTgtttgtagtttacagtgtgtttattcTGAGCTCAGGCTTCGTAGTACTGTTTCTCCACCCTCTTAGTTACAGTGGACGTTACTCCACGTTGTACCATCTCCATCTGCCGCATCACACTGCCACCCACCTCCATGTGCTGCGTGACCTGCCGGCTCGACATCATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80943 True 2558 lncRNA 0.37 2 50273676 50276276

Neighbor

gene id symbol gene type direction distance location
LOC103021573 LOC108414650 coding upstream 770 50247709 ~ 50272906 (+)
LOC103026155 LOC108413566 coding upstream 27165 50200066 ~ 50246511 (+)
kcnn1 kcnn1b,LOC108413565,LOC107598990,LOC107589798 coding upstream 80177 50111467 ~ 50193499 (+)
ccdc124 ccdc124,LOC107744596 coding upstream 182259 50072319 ~ 50091417 (+)
b3gnt3 b3gnt3 coding upstream 286563 49970111 ~ 49987113 (+)
spag17 NA coding downstream 59273 50335549 ~ 50368567 (+)
LOC103025544 LOC108413600,LOC107725316 coding downstream 94817 50371093 ~ 50420324 (+)
LOC103044272 LOC108415017 coding downstream 463035 50739311 ~ 50747362 (+)
LOC103042750 NA coding downstream 477084 50753360 ~ 50769930 (+)
LOC103043454 slc44a5,slc44a5b,LOC108412671,LOC107657906 coding downstream 499475 50775751 ~ 50834436 (+)
G60060 NA non-coding upstream 180199 50093112 ~ 50093477 (+)
G60059 NA non-coding upstream 188643 50081636 ~ 50085033 (+)
G60047 NA non-coding upstream 247669 50025489 ~ 50026007 (+)
G60041 NA non-coding upstream 272556 50000909 ~ 50001120 (+)
G60034 NA non-coding upstream 283355 49939516 ~ 49990321 (+)
G60121 NA non-coding downstream 200643 50476919 ~ 50566228 (+)
G60081 NA non-coding downstream 378152 50654428 ~ 50660806 (+)
G60150 NA non-coding downstream 513038 50789314 ~ 50798761 (+)
G60149 NA non-coding downstream 524253 50800529 ~ 50838759 (+)
G60148 NA non-coding downstream 537353 50813629 ~ 50837265 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other upstream 283259 49867618 ~ 49990417 (+)
G59961 NA other upstream 836063 49423516 ~ 49437613 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other upstream 903425 49322278 ~ 49370251 (+)
G59806 NA other upstream 1275205 48998160 ~ 48998471 (+)
G59782 NA other upstream 1394053 48870167 ~ 48879623 (+)
LOC103045694 NA other downstream 363218 50639494 ~ 50652906 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other downstream 999924 51276200 ~ 51286140 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other downstream 1111294 51387570 ~ 51409262 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other downstream 1488803 51765079 ~ 51826103 (+)
LOC111192705 pim2,LOC107601747 other downstream 1552078 51828354 ~ 51832271 (+)

Expression


Co-expression Network