G60505


Basic Information

Item Value
gene id G60505
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51523602 ~ 51527462 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU81568
gtgggcagtgtgccaaatcctgctggaaaatgaaatgatggtttggataaagagacatgtcatctgctgctgttgatccactgtgttttattatcaagtctaaagtcagtgcagttttgttttcccacaaaatcttacagcacttcatgcttccctctgctactgacaacttttatagagatgcagatttcattttccagcaggacttggcacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU81568 True 215 lncRNA 0.41 2 51523602 51527462

Neighbor

gene id symbol gene type direction distance location
LOC103032126 lhpl4,lhfpl4b,LOC103032126,LOC108440531,LOC107584928,LOC107727430,LOC107674308,LOC108265076,LOC105898894 coding upstream 106452 51410594 ~ 51417150 (+)
LOC103031807 LOC103031807,LOC108440550 coding upstream 143152 51372895 ~ 51380450 (+)
cdk20 cdk20,LOC107727427 coding upstream 156887 51355943 ~ 51366715 (+)
hcfc1 hcfc1,LOC107743103,LOC107552212,LOC107701823 coding upstream 167949 51338393 ~ 51355653 (+)
irak1 irak1 coding upstream 186411 51317261 ~ 51337191 (+)
LOC103034344 NA coding downstream 91753 51619215 ~ 51627592 (+)
usp11 usp11 coding downstream 103703 51631165 ~ 51652373 (+)
uxt uxt,LOC107734525,LOC107601756,LOC107743136,LOC107674348,LOC107653408 coding downstream 136506 51663968 ~ 51669246 (+)
elk1 elk1,LOC106512270 coding downstream 148947 51676409 ~ 51708703 (+)
LOC103034896 si:ch211-180f4.1,LOC108441099,LOC108265014,LOC107674375,LOC107584888,LOC107601766,LOC107743097 coding downstream 205545 51733007 ~ 51757900 (+)
LOC111192704 NA non-coding upstream 44466 51474637 ~ 51479136 (+)
G60489 LOC108413501 non-coding upstream 98162 51421158 ~ 51425440 (+)
G60474 NA non-coding upstream 271793 51213528 ~ 51251809 (+)
G60473 NA non-coding upstream 315732 51205668 ~ 51207870 (+)
G60468 NA non-coding upstream 358703 51160052 ~ 51164899 (+)
G60506 NA non-coding downstream 12906 51540368 ~ 51604769 (+)
G60512 NA non-coding downstream 25640 51553102 ~ 51553513 (+)
G60536 NA non-coding downstream 185738 51713200 ~ 51714184 (+)
LOC111192743 NA non-coding downstream 189586 51717048 ~ 51717756 (+)
G60634 NA non-coding downstream 196271 51723733 ~ 51723998 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other upstream 114340 51387570 ~ 51409262 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other upstream 237462 51276200 ~ 51286140 (+)
LOC103045694 NA other upstream 870696 50639494 ~ 50652906 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other upstream 1533185 49867618 ~ 49990417 (+)
G59961 NA other upstream 2085989 49423516 ~ 49437613 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other downstream 237617 51765079 ~ 51826103 (+)
LOC111192705 pim2,LOC107601747 other downstream 300892 51828354 ~ 51832271 (+)

Expression


Co-expression Network