LOC111192743


Basic Information

Item Value
gene id LOC111192743
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51717048 ~ 51717756 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU81756
TAAGGGGTCTCCATCTTTGGTGTCATCCCTCCTCGGGGGCCGGTGGCCCTCCGGGCAGAGGAGGAGGGGGCTATTAATTAAAGGCAGTGAGCGATGCACCGACACAGCAGGACCCAACCACAATGCTCTGATTAACAAAACCCCAGAACACTTCTGCAAACTTCGCTTTGATTTCACTTGGCTGGGAGTTGGAATGGGGAACGATGCAGTTGAAAGAAAGGGAGCCagcgagcgagagaaagagagagatgtttaTGCAGTAAAAAAGATGCAGCAGGAGGCTGGATTCCATATGCCAGGCCTACGCCTCTATATTACAGGATAAAGCAGCAGAAGAATGGAGGACAGCTTCTGCTCATAACGAGGTGGATCAGATACAGAAGGCTGGATGACTGACAGGCTTGTAATGTTAAAGACCGCATTGTGTAGGATCGTTTTATTTCTTTGTAGATTGTGTTATGtgcttttatatacagtatagctataaaatacagcatttttctttctatctaGTCACTATTTTAGATGGTTGGTgtagtgcagtggataacaccaccgcctgtCAGTGAGAAttgaatgactgaaataaataaacattttaa
>XR_002650122.1
TAAGGGGTCTCCATCTTTGGTGTCATCCCTCCTCGGGGGCCGGTGGCCCTCCGGGCAGAGGAGGAGGGGGCTATTAATTAAAGGCAGTGAGCGATGCACCGACACAGCAGGACCCAACCACAATGCTCTGATTAACAAAACCCCAGAACACTTCTGCAAACTTCGCTTTGATTTCACTTGGCTGGGAGTTGGAATGGGGAACGATGCAGTTGAAAGAAAGGGAGCCagcgagcgagagaaagagagagatgtttaTGCAGTAAAAAAGATGCAGCAGGAGGCTGGATTCCATATGCCAGGCCTACGCCTCTATATTACAGGATAAAGCAGCAGAAGAATGGAGGACAGCTTCTGCTCATAACGAGGTGGATCAGATACAGAAGGCTGGATGACTGACAGGCTTGTAATGTTAAAGACCGCATTGTGTAGGATCGTTTTATTTCTTTGTAGATTGTGTTATGtgcttttatatacagtatagctataaaatacagcatttttctttctatctaGTCACTATTTTAGATGGTTGGTgtagtgcagtggataacaccaccgcctgtCAGTGAGAAttgaatgactgaaataaataaacattttaatgatataA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU81756 False 602 lncRNA 0.45 2 51717048 51717748
XR_002650122.1 True 610 lncRNA 0.44 2 51717048 51717756

Neighbor

gene id symbol gene type direction distance location
elk1 elk1,LOC106512270 coding upstream 8345 51676409 ~ 51708703 (+)
uxt uxt,LOC107734525,LOC107601756,LOC107743136,LOC107674348,LOC107653408 coding upstream 47802 51663968 ~ 51669246 (+)
usp11 usp11 coding upstream 64675 51631165 ~ 51652373 (+)
LOC103034344 NA coding upstream 89456 51619215 ~ 51627592 (+)
LOC103045634 grip2a,LOC108441105,LOC107751584,LOC107714565 coding upstream 182032 51479421 ~ 51535016 (+)
LOC103034896 si:ch211-180f4.1,LOC108441099,LOC108265014,LOC107674375,LOC107584888,LOC107601766,LOC107743097 coding downstream 15251 51733007 ~ 51757900 (+)
slc35a2 slc35a2,LOC107674336,LOC107584890 coding downstream 118622 51836378 ~ 51850614 (+)
bcap31 bcap31,LOC107653425,LOC107601763,LOC107674338 coding downstream 134268 51852024 ~ 51886071 (+)
LOC103046554 pnck,LOC108441108,LOC107653407,LOC108265019,LOC107601755,LOC107743135,LOC105889742 coding downstream 276387 51994143 ~ 52014767 (+)
cdk16 cdk16,LOC107653433,LOC107601769,LOC107674341,LOC107584883 coding downstream 351785 52069541 ~ 52116270 (+)
G60536 NA non-coding upstream 2864 51713200 ~ 51714184 (+)
G60506 NA non-coding upstream 112279 51540368 ~ 51604769 (+)
G60512 NA non-coding upstream 163535 51553102 ~ 51553513 (+)
G60505 NA non-coding upstream 189586 51523602 ~ 51527462 (+)
LOC111192704 NA non-coding upstream 237912 51474637 ~ 51479136 (+)
G60634 NA non-coding downstream 5977 51723733 ~ 51723998 (+)
G60645 NA non-coding downstream 103830 51821586 ~ 51834142 (+)
G60649 NA non-coding downstream 131902 51849658 ~ 51850183 (+)
G60643 NA non-coding downstream 178216 51895972 ~ 51900107 (+)
G60652 NA non-coding downstream 213841 51931597 ~ 51932374 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other upstream 307786 51387570 ~ 51409262 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other upstream 430908 51276200 ~ 51286140 (+)
LOC103045694 NA other upstream 1064142 50639494 ~ 50652906 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other upstream 1726631 49867618 ~ 49990417 (+)
G59961 NA other upstream 2279435 49423516 ~ 49437613 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other downstream 47323 51765079 ~ 51826103 (+)
LOC111192705 pim2,LOC107601747 other downstream 110598 51828354 ~ 51832271 (+)

Expression


Co-expression Network