G60645


Basic Information

Item Value
gene id G60645
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51821586 ~ 51834142 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU81776
gagcagagggaagaagcatgaagtgctgtaagggaattttgtggggaaaacaaaactgcactgactttagacttgataataaaacacagtggatcaacaccagcagatgacatgtctctttatccaaaccatcatttcattttccagcaggatttgccAGTCATGTTGTAGCTAGAAACTTCTTCACTCCACACAAACATGTACATTAGCATTATTAGTCCCTCAACACTGAATGAATGGGCGCTGTgttattttgtgaaaaaagaaTGAAGTTTGGATTAAAAAAAGTCGATTGTATTGCAAAAGGCGCTTCTGATAAAAATTGGCACCTGTAAACAAGTTTCCCACATTAAACCAGGTGTATATCAGTTACTACACTCATATTTCTGTAATGCTAACAGGCACTTATACTGTCTGTTCGTGATTAGGGATGTTTTTGTGTGACATTTTCCACTCTCATTCTTCTTCAGAAGGTTTTATTAGAGCTCAGGTAGGTGTTAGAGGGGGAAACATGCATATAGAGGATTGGGAACCTGCTGACTGATGGCGAATGATAACACTGATGTCTGTGATGACCTAGATTTTAATTCCGCTCAGCATCGAATTTTAGCAGGAAGCCCAGTGAGCCGCTTGCTGATAATTCTAATAATGGCTGAGGTGAAGGCTGGCCGTCAAAACCGCAAGATTTTATAGATGCATG
>TU81777
gctggaaaatgaaatccacatctccataaaagttgtcatgagcagagggaagaagcatgaagtgctgtaagggaattttgtggggaaaacaaaactgcactgactttagacttgataataaaacacagtggatcaacaccagcagatgacatgtctctttatccaaacatcactgatcatcagtaaattttacatttcatttgtaaatcaagggagcagagtctggagga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU81776 True 700 lncRNA 0.40 2 51821586 51824999
TU81777 False 230 lncRNA 0.39 2 51824111 51834142

Neighbor

gene id symbol gene type direction distance location
LOC103034896 si:ch211-180f4.1,LOC108441099,LOC108265014,LOC107674375,LOC107584888,LOC107601766,LOC107743097 coding upstream 63686 51733007 ~ 51757900 (+)
elk1 elk1,LOC106512270 coding upstream 112883 51676409 ~ 51708703 (+)
uxt uxt,LOC107734525,LOC107601756,LOC107743136,LOC107674348,LOC107653408 coding upstream 152340 51663968 ~ 51669246 (+)
usp11 usp11 coding upstream 169213 51631165 ~ 51652373 (+)
LOC103034344 NA coding upstream 193994 51619215 ~ 51627592 (+)
slc35a2 slc35a2,LOC107674336,LOC107584890 coding downstream 2236 51836378 ~ 51850614 (+)
bcap31 bcap31,LOC107653425,LOC107601763,LOC107674338 coding downstream 17882 51852024 ~ 51886071 (+)
LOC103046554 pnck,LOC108441108,LOC107653407,LOC108265019,LOC107601755,LOC107743135,LOC105889742 coding downstream 160001 51994143 ~ 52014767 (+)
cdk16 cdk16,LOC107653433,LOC107601769,LOC107674341,LOC107584883 coding downstream 235399 52069541 ~ 52116270 (+)
tsr2 tsr2,LOC107727422,LOC107743119 coding downstream 291956 52126098 ~ 52132072 (+)
G60634 NA non-coding upstream 97588 51723733 ~ 51723998 (+)
LOC111192743 NA non-coding upstream 103830 51717048 ~ 51717756 (+)
G60536 NA non-coding upstream 107402 51713200 ~ 51714184 (+)
G60506 NA non-coding upstream 216817 51540368 ~ 51604769 (+)
G60512 NA non-coding upstream 268073 51553102 ~ 51553513 (+)
G60649 NA non-coding downstream 15516 51849658 ~ 51850183 (+)
G60643 NA non-coding downstream 61830 51895972 ~ 51900107 (+)
G60652 NA non-coding downstream 97455 51931597 ~ 51932374 (+)
G60661 NA non-coding downstream 183649 52017791 ~ 52018077 (+)
G60688 LOC108440542 non-coding downstream 362078 52196220 ~ 52314109 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other upstream 412324 51387570 ~ 51409262 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other upstream 535446 51276200 ~ 51286140 (+)
LOC103045694 NA other upstream 1168680 50639494 ~ 50652906 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other upstream 1831169 49867618 ~ 49990417 (+)
G59961 NA other upstream 2383973 49423516 ~ 49437613 (+)

Expression


Co-expression Network