G60688 (LOC108440542)


Basic Information

Item Value
gene id G60688
gene name LOC108440542
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 52196220 ~ 52314109 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU81847
cacacacacacacacacacacacacacacacacacacacacacacacacacactctcgctctctgCTGGCCTTGACTGCGTCTCTGTCACCTGGCAGCTAATCACTCCATAAGGCTTTTCTCCTGTTCAGCAGGGAACACATCTCTCTCCTCTTGCTGTTGTTGCTCCCTCACTCtgtccttctcctcctcctcctccccctgctCCCCAGGGCTCTCCAGCCTGCTGTCTTCCCCCAGAATGCTGCACAGCTCGGCCAGACGCTGCTGCATTTTGGGGATGCCCGAGAGCTGCGTCTCCAGCCGCAGTTTCTCGTCCTGCAGCGAGACGCGGGTGGAGGCGTCTAGCTTCTCAAAGCGCCAGCCGCCTTCTCCGTCAAACTGCAGCAGGTGGGTGT
>TU81848
taattaaagcagcactacTACTATAAAAAGTTACAATATTATGTTCAAATGATTTCCAACATATATTACAACTTTTATTCTAAAACACACAactttattcttgaaatattatgactttttcCTCAAAGTCtacaattctttttttcttaaagtggCCCCAAAATGCGGTCATAGCTTTTCTAtgacattgaataaaaaaaacaactctgaAACACCTttatttgtaagtgtgtgtgtgagctgtgtaATCTGTGCAAACATGAACACTAGAAGGTTACCTGACTGGCTCTGTTAATTGATTTTTAAGCGAAACTGAAAGAATAGAAGCCCTTCTTCTAAATCTATCTGCGCTTAGTCCAATTTGTACTGAGTGAAATGATATGCACTGGAAATGAAATTCAGAAAATAGGAAATATAAAATGCTACAGACCTCTACAGCAAAGATTTAAGCAAAAAGGGACGTAAATAACTCCCTCAGAATCAACTCCCATTGATTGTGTAAACCAGGGTTGGGCGGTATAACggtaatatttaacattaaaacattaacctGCTGCTGATCTAAACAGAATCAGGGGGCCACAGATTAAACATGGAGGTACAACAGCATGCTGCGGTCATTGCACTGACCCAAAACAAAAAATGGTGAGGTCAAGAACAGCTTTGGGTAAGGTCATAATTGGGAATGGGGGTCAGCATGGTCTGTACCACAGACTACAGAGGGAGCTGGAGGTGAGAAGCAGATTATGTATCAGTGGCTTTTCTATGTACAAGGCAGTTATTGGCTGCTTTTTaacgttccaccttaaatgataaaagaagttgctgcattatttaaggtggaacacaACATTAAAATTAGAAACTACTGCTGACAGGAGGTGTTCAGACAGTCTCTGACTAATATCCAATATCCACTACTAGATTAGACTCTAATGGTTGACTGCAACTGATGAaaaaagttaatcagagttaatcAGCACAGACTGAGCCAGACCAAAGCAAAAATCTGCTAACTATGCTAATTCAGCTTCTCTCTCTGGATTTGCCGCAGATCGACATTCAGCTTTGCTGTCAGAGTGATAGTtcaacatttattaaattattagtttAAACAAAAGTGTGTTCACTTAGTCACTTAGTCATGAATCGCTGAAGTCATATAAAAACTAAGAATTGTGAATATGCTACTTGTGCTAATAACATTAGTCTTTATTATAAGTAGGCAATTAAGGGGCTCCGGGTGGTTCAacagactaaggcgctgccactatgatcaggagatcgctggttcgaatccctgtcatgcagcttgccatcagctgccagagccccgagagggCACAACTAGCCTTGCATTTTCTAGGTGGGAATATAGAGCTCTTTTCCACTCATTACTCCTAGAgcgatgtcgatcagcacgaggcgtctgtgagctgatgtatcagaacctagtcgctgcgctttcctccgcaTCAGCAGCAGTATGACTTTATGTGTcctcacccttctggtgttgggaCATCACTAATGATTGGGGGAGATTATTGGCATAGCCAAATTGAGGAGAAAAGTGGGAGAGAAATTGAAGTAGGTGATATGGCGATATGACTATATTACCGCCCAACCCTGGAGTGAACAGTACTGACCTCGGCAGTGGACATGACCTCTACAAAAcgaaatcaaacaaacaaacaatcagaTTTCTTAAAAACGCTCAGTCTGAAAAGCTAGTGGTTACGATACGAAGTTAAGTTTAAggttaactttaactttttcaCCCTTTAAACGGTTTTCCTTCTCATTAAAGGAAAAACTACAGCACTAAGTGGTAATCTAACACTTCATCAGCACGGTGAGAAGCTGAGTATTGTTAAAACCAACTGTACTTACAGTACTGCAAACTCACACGCACGTATATGCAGTCACTGATCTGACAGCAGCCCTTTCTCATGAGTCTCATACAAATACACGCACATACatccacacatatacacacacacatgcacaccgGTGCCTAGGTGCCAGAGAGTTTGAGAGAAATCTGCAGAGAATTGAAATAACAAGGGATGGAACAGCTTTCATGGGTGCTTTCATCATCCGCCGCACCTGGAAGAGCTGGCAGCTGCCTCATGCCTTTCCCCccacctctaacacacacacacacacacacacacacacgggctgGGACGCTAAGCTtcaaacactccacacacacacagacaaaacaaaagaaaaaaagaaacagagcgCACACAACCCGcactcacacatgcacaaatATGCTCAGAGCAGCTCACAGCTTGGAAAGGGCCCTAAACACTATCCCTGAACTACTAACATTTCTGATTGAGAGTCTTCATCAACCtccacacacagaaacaaacacacacacacacacacacactcgctctctgCTGGCCTTGACTGCGTCTCTGTCACCTGGCAGCTAATCACTCCATAAGGCTTTTCTCCTGTTCAGCAGGGAACACATCTCTCTCCTCTTGCTGTTGTTGCTCCCTCACTCtgtccttctcctcctcctcctccccctgctCCCCAGGGCTCTCCAGCCTGCTGTCTTCCCCCAGAATGCTGCACAGCTCGGCCAGACGCTGCTGCATTTTGGGGATGCCCGAGAGCTGCGTCTCCAGCCGCAGTTTCTCGTCCTGCAGCGAGACGCGGGTGGAGGCGTCTAGCTTCTCAAAGCGCCAGCCGCCTTCTCCGTCAAACTGCAGCAGGTGGGTGT

Function

NR:

description
PREDICTED: ATP-binding cassette sub-family D member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU81847 False 397 lncRNA 0.59 3 52196220 52314109
TU81848 True 2749 lncRNA 0.43 2 52311312 52314109

Neighbor

gene id symbol gene type direction distance location
tsr2 tsr2,LOC107727422,LOC107743119 coding upstream 64148 52126098 ~ 52132072 (+)
cdk16 cdk16,LOC107653433,LOC107601769,LOC107674341,LOC107584883 coding upstream 79950 52069541 ~ 52116270 (+)
LOC103046554 pnck,LOC108441108,LOC107653407,LOC108265019,LOC107601755,LOC107743135,LOC105889742 coding upstream 181453 51994143 ~ 52014767 (+)
bcap31 bcap31,LOC107653425,LOC107601763,LOC107674338 coding upstream 310149 51852024 ~ 51886071 (+)
slc35a2 slc35a2,LOC107674336,LOC107584890 coding upstream 345606 51836378 ~ 51850614 (+)
LOC103029799 LOC103029799 coding downstream 154282 52468391 ~ 52478268 (+)
G60661 NA non-coding upstream 178143 52017791 ~ 52018077 (+)
G60652 NA non-coding upstream 263846 51931597 ~ 51932374 (+)
G60643 NA non-coding upstream 296113 51895972 ~ 51900107 (+)
G60649 NA non-coding upstream 346037 51849658 ~ 51850183 (+)
G60645 NA non-coding upstream 362078 51821586 ~ 51834142 (+)
G60696 abcd1,LOC108265308,LOC107674359,LOC107727428,LOC107552221,LOC107701814,LOC107743108 non-coding downstream 4738 52318847 ~ 52328328 (+)
G60701 NA non-coding downstream 22888 52336997 ~ 52343123 (+)
G60712 cxxc1,LOC108440538,LOC107701818,LOC107743112,LOC107727409 non-coding downstream 143403 52457512 ~ 52461465 (+)
G60717 NA non-coding downstream 171840 52485949 ~ 52487552 (+)
LOC111192705 pim2,LOC107601747 other upstream 363949 51828354 ~ 51832271 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other upstream 370117 51765079 ~ 51826103 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other upstream 786958 51387570 ~ 51409262 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other upstream 910080 51276200 ~ 51286140 (+)
LOC103045694 NA other upstream 1543314 50639494 ~ 50652906 (+)

Expression


Co-expression Network