LOC103040231 (asb13,asb13b,LOC108266053,LOC107734516,LOC107725307,LOC107599049,LOC107664994)


Basic Information

Item Value
gene id LOC103040231
gene name asb13,asb13b,LOC108266053,LOC107734516,LOC107725307,LOC107599049,LOC107664994
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 37111541 ~ 37115408 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228898.3
TTACCTACTCCAGTCCAGTCGGTGGTAGCAGCCTGGATATTAGAGACTCTGCTGGCTAATGGCTTAAGACTGTACACACAGgaagctagctaagctaagctaagctaacttagccagcTAACTGTAAGTCATGGGAACCCTGCAGCTCAGAGCTAACTACTTATAACAGGGCTAAAGGACACCTACTGATTTTTCTGGAACTAAATAAGGAAAGATGAAATGGACATAACACGCACTAGACCCTCGCTCTTCAGTGATATCGCACATGGCCTGGGCTTCTGGACAGACCGCTCTGCCGTTCATGAAGCAGCAGCTCACGGAAGAGTGGCGCAGCTTCAGCAGCTGATTCAGAATGGAGCGATGGTTAATATTGTAGCCGTGGACTCCATCACCCCTCTCCATGAGGCTTGTATACAAGGCCAGACACAGTGTGTGAAGCTGCTCTTGGAGGCTGGCGCTCATgTGGATGCCCGTAACATAGATGGTAGCACGCCGCTGTGTGATGCATGTGCTGCTGGAAGTCTGGAGTGTGTGAAGTTGCTGTTGGAGTATGGAGCTGTGGTTAACCCTCCTCTCTTCACCTTCTCCCCCCTTCATGAGGCCTGCATGGGGGgtaaTTCGCAGTGTGTGCAGCTGATGATAGCCCGGGGGGCGTTCATGGAGGCCCACGACTGTCATTTCGGGACTCCTCTTCATGTGGCTTGTGCCAGGCAGAATTTAGACTGTGTCAAAGTTCTTCTGAATGCAGGTGCGAATGTAAATGCAGCGAAGCTCCACGAGACGGCCCTGCATCACGCTGCTAAAGCAAACAATCTGAAGTTGATTGAGTTGCTGGTTGAGTTCGGGGGCAGTGTGTTTGCTAGAGACAACCTCGGCAAAAAGCCCATCCAGTACACCAAACCTGGATCTCCAGCAGCGCTCTGTCTGGACTTCTATGAAACTGAACCCCTCAGTCTTCAGCACTTAAGCAGGATTGCACTCAGAAAAGCACTGGGGATAAAAGCGCTGGAAGCCCTGCCTCAGCTGGGGCTGCCCAACCGCATGATCTGCTACCTCACCTACATGCCAGCACCACCCACAGACCTGCTGACCAGCTCACAGCTCACTGCGCTCTAACAGTGACCAACTAACTGACTGAAAGTTCAGGGCAAAAAGCCGCTAAActctaaaagtacattttcacaCTTTCTGGAAAAGTAAAAGTTTGCAGCTTGTGAAGCACTAAATCAAAACCATGCCTTTTTATATTGGAtttaatagcaaaaaaaaaaaaatgtcatggaAAATGTTGCATTTATAAAATGAGGAAGAAGAGAAACACTTCCTaattcaatggaagtcagttgaataatattgtattttagttctcattttggagcatatctattggttcatttattatttaatttggaGACAGTATAAAAATGACTGCCTGGTTCAAAcagtcaaaaagtgaaaaatgttcATAGTAGttataattaatacaaattcaAATAATCAAAATGAACGCTGCAGCTTTACA

Function

symbol description
asb13b Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Is expressed in female organism. Orthologous to human ASB13 (ankyrin repeat and SOCS box containing 13).
asb13 Predicted to be involved in intracellular signal transduction and protein ubiquitination. Predicted to be located in cytosol.

NR:

description
ankyrin repeat and SOCS box protein 13

GO: NA

KEGG:

id description
K10335 ASB13; ankyrin repeat and SOCS box protein 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228898.3 True 1522 mRNA 0.46 6 37111541 37115408

Neighbor

gene id symbol gene type direction distance location
LOC103044321 plekha2,LOC108414546 coding upstream 747 37094714 ~ 37110794 (+)
LOC111192679 NA coding upstream 20154 37086442 ~ 37091387 (+)
LOC103040549 NA coding upstream 26042 37064399 ~ 37085499 (+)
endog endog,LOC107736532 coding upstream 512645 36596016 ~ 36598896 (+)
ntng2 ntng2,ntng2a,LOC108438355,LOC106585788 coding upstream 526129 36493502 ~ 36585412 (+)
nras nras,LOC107598969,LOC107725308 coding downstream 2011 37117419 ~ 37126020 (+)
ampd1 ampd1,LOC107664993 coding downstream 11527 37126935 ~ 37150039 (+)
LOC103044036 dennd2c,LOC108438557,LOC107566809,LOC107725285 coding downstream 35841 37151249 ~ 37182523 (+)
bcas2 bcas2,LOC107674303,LOC107734517,LOC107664982,LOC107725297 coding downstream 69011 37184419 ~ 37188716 (+)
trim33 trim33,LOC107734526,LOC107725313 coding downstream 76590 37191998 ~ 37237659 (+)
G56859 NA non-coding upstream 236194 36807703 ~ 36875347 (+)
G56863 NA non-coding upstream 278495 36825767 ~ 36833046 (+)
G56862 NA non-coding upstream 282051 36827530 ~ 36829490 (+)
G56853 NA non-coding upstream 338670 36770816 ~ 36772871 (+)
G56852 NA non-coding upstream 359900 36749089 ~ 36751641 (+)
G57088 NA non-coding downstream 115582 37230990 ~ 37233036 (+)
G57209 NA non-coding downstream 272681 37388089 ~ 37391366 (+)
G57212 NA non-coding downstream 358588 37473996 ~ 37474778 (+)
G57227 NA non-coding downstream 361824 37477232 ~ 37548787 (+)
G57229 NA non-coding downstream 370963 37486371 ~ 37546259 (+)
G57066 NA other upstream 105743 37005273 ~ 37005798 (+)
G56701 pola2,LOC107710902,LOC107657899 other upstream 1147031 35956104 ~ 35964510 (+)
G56504 NA other upstream 1652664 35420718 ~ 35458877 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other upstream 1827270 35276079 ~ 35284271 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other upstream 1839013 35226485 ~ 35272528 (+)
agtpbp1 agtpbp1 other downstream 1993836 39109244 ~ 39153476 (+)
frmd3 frmd3,LOC107678471 other downstream 2176663 39292071 ~ 39370585 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other downstream 2851682 39967090 ~ 40090271 (+)
G57664 NA other downstream 2929245 40044653 ~ 40046467 (+)
G57856 tp73 other downstream 3559632 40675040 ~ 40680555 (+)

Expression


Co-expression Network