endog (endog,LOC107736532)


Basic Information

Item Value
gene id endog
gene name endog,LOC107736532
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 36596016 ~ 36598896 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228902.3
cAGAGCTGACGTCATCAACATGCGACCCACCCAGGCTGTTCTGCACTGAGGGTCACGCTGGATTagatagagagcgagagagagaaacatgtatatttgatttatactaagttatatgtatatatttttataagtatAGTAATGAATATGAGGCGGGTGTTCGGGTCTCGGTGGTTTGTCTCCGGTGTGTCGGTGGCTGTAGGAGTCGGTGTTGGAGCAGCACTGACCCAgtactcctcctcttcttcatctttATCCCCCTCTTCTTCACTCCTCCACCGGCTGCCCGTTATCCCCATCCCCTCGGTGAGCGCGCGGTCGGAGCTGGCTCCGTACTCCCCGCCGGGCGCGCTGATCCCCGGGGGCGGTGGAGGCGGTAAGTCCGCGGCGGTGATGAAGTACGGGTTCCCCTCGCTCTCCAACGTCAGATCCCGGGAGTCCTACGTCTCCTCCTACGACCCGCGGTGCCGCACCGCCGCCTGGGTGATCGAGCAGCTGAGCCCGGAGACCCTGAGCGGATCCGCGGACCGGAAACGCTGCGACTTTAAGGAGGACGAGTCGGTGCACGTGTACCACAGATCCACCAACCCGGACTACCGGGGCAGCGGCTTCGACAGAGGACACCTCGCCGCCGCCGCTAACCACAAGTGGAGCCAGAAAGCCATGGAGGACACCTTCTATCTCAGCAACGTGGCTCCACAGAACCCTCACTTAAACCAGAACGCGTGGAACAACTTGGAGCAGTACTGTCGCTCTCTCACCAAGCAGTTTCacaatgtgtttgtgtgctcaGGACCACTTTACCTGCCCAGACAGGAGCCTGATGGGAAGATGTACGTGAAGTATCAGGTGATTGGGAAGAACCACGTGGCGGTGCCGACTCACTTCTTTAAGGTGGTGATTCTGGAGAATCGGCGCGGGGAGGTGGAGCTGCGCTCGTACGTGATGCCCAACACGCCGGTCGATGACAAGATTCCACTGGAGCGCTTCCTTGTGCCCATCGAGAGCATCGAGAGAGCGTCCGGCCTGCTGTTCGTCCCCAACATCATGAAGAGGACCAACAGTCTGCAGGCCATCACTGCGGGCTGAGAGGAGGACTGAATCCAGGGTACACTTAATtacctacttacttacttacttgagTAACTGCTGATTAACGTCTTTACACTGGCTATGCCTCGTTCACACTATAccactttttaaatttaagacTATTGTGGTTTGAATTCCTCGATTCAAAATTACACGAGAACTTGCGATTCTATATAAGAGAATCTATAGAGTGGTGAATACCCACTTgaagtgagtccaaaatgaatgggattATATGTAGCAATTGTGTATAATCATATAAATGATtgaaaataaattcataaaaagagtaaaagcttttaaactccagttataagccttttaaacatgctctagcTGTATATCCAGCGTCAGATTGCCAACAAATAAgcacacagtagcagtaatgctagcttCTTTACTGCCTGAATCCTGTTAGCTgtgtaaaaatggaaaaatacatgttttttttagtaaaatactttattatacttctaaaattaaaggaataaacTGGACAAGAAAAGAAGTTTGTTACTATTTTATTGATACTTTTGTTCGTCCattggttctctctctctatgtgatcccattggctgtaggtAGTCGCAGCTCGAGATTCACAATCACTGACTGGTCTGGATATTAAACCTGCTGGATATTTGCCTCCAAGCAGAGGTAAAAATCAATCGATCATGACTGGAAAAAGCTAAAACAGGCTAAAACCGTGTCGTGTGAACTAGGCATTAAGTTCCTGTGagtttactgtacattttctgctgctgctcctaaattcacatatttactcactgtATTTAAACAGCTACTGATAATAAGGCTGAATAGCAGGTCTGTGGGATTTTTACTGTGGAGCTCTTTCTAATGTGATGGGAGTCCGggtctgatgctgtttctcaggaaagaaaataaacactgttcttTGTGTGGAAATGGGAAAATATTTGAGtgcaattaatatatttaagaactgtcacttttattaaaatactgctgtaataaataaataaacagtaagaTGGCTTTT

Function

symbol description
endog Predicted to enable endoribonuclease activity and single-stranded DNA endodeoxyribonuclease activity. Predicted to be involved in apoptotic DNA fragmentation. Predicted to be active in mitochondrial inner membrane and nucleus. Orthologous to human ENDOG (endonuclease G).

NR:

description
endonuclease G, mitochondrial

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K01173 ENDOG; endonuclease G, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228902.3 True 2116 mRNA 0.47 3 36596016 36598896

Neighbor

gene id symbol gene type direction distance location
ntng2 ntng2,ntng2a,LOC108438355,LOC106585788 coding upstream 10604 36493502 ~ 36585412 (+)
LOC103035335 atp2a2,atp2a2a,LOC107757297,LOC108265716 coding upstream 264447 36296278 ~ 36331569 (+)
ift81 ift81,LOC106585468 coding upstream 306215 36262411 ~ 36289801 (+)
LOC103035951 LOC108438364,LOC107598973,LOC107757293 coding upstream 390913 36099455 ~ 36205103 (+)
fxn fxn coding upstream 514563 36072072 ~ 36081453 (+)
LOC103040549 NA coding downstream 465503 37064399 ~ 37085499 (+)
LOC111192679 NA coding downstream 487546 37086442 ~ 37091387 (+)
LOC103044321 plekha2,LOC108414546 coding downstream 495818 37094714 ~ 37110794 (+)
LOC103040231 asb13,asb13b,LOC108266053,LOC107734516,LOC107725307,LOC107599049,LOC107664994 coding downstream 512645 37111541 ~ 37115408 (+)
nras nras,LOC107598969,LOC107725308 coding downstream 518523 37117419 ~ 37126020 (+)
G56824 NA non-coding upstream 3040 36591893 ~ 36592976 (+)
G56836 NA non-coding upstream 16478 36560765 ~ 36579538 (+)
G56812 NA non-coding upstream 183259 36412425 ~ 36412757 (+)
G56811 NA non-coding upstream 183801 36411930 ~ 36412215 (+)
G56786 rapgef1,LOC108265900 non-coding upstream 242737 36347626 ~ 36353279 (+)
G56852 NA non-coding downstream 150193 36749089 ~ 36751641 (+)
G56853 NA non-coding downstream 171920 36770816 ~ 36772871 (+)
G56859 NA non-coding downstream 208807 36807703 ~ 36875347 (+)
G56863 NA non-coding downstream 226871 36825767 ~ 36833046 (+)
G56862 NA non-coding downstream 228634 36827530 ~ 36829490 (+)
G56701 pola2,LOC107710902,LOC107657899 other upstream 631506 35956104 ~ 35964510 (+)
G56504 NA other upstream 1137139 35420718 ~ 35458877 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other upstream 1311745 35276079 ~ 35284271 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other upstream 1323488 35226485 ~ 35272528 (+)
LOC103047498 NA other upstream 1606731 34961800 ~ 34989285 (+)
G57066 NA other downstream 406377 37005273 ~ 37005798 (+)
agtpbp1 agtpbp1 other downstream 2510348 39109244 ~ 39153476 (+)
frmd3 frmd3,LOC107678471 other downstream 2693175 39292071 ~ 39370585 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other downstream 3368194 39967090 ~ 40090271 (+)
G57664 NA other downstream 3445757 40044653 ~ 40046467 (+)

Expression


Co-expression Network