c6h9orf116 (LOC103023176)


Basic Information

Item Value
gene id c6h9orf116
gene name LOC103023176
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 36208216 ~ 36209659 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229097.3
GTAGGTTCACAGGGCTGAGCGGATGTGACGTCACCTGGTTACAGTTGTTGGTAGCAACCAGTACAGAAGCGCAGCGTAAATAAACccgtaattaaataataataactgtattCTCCCTAAACTAAACCCTGAGATTAAAGATTAAATCAGGATTTAAACTCGATAATGGAGGAAGAATTTTCTGCTGAGCGGCTGAAACCTGAAGATTCTCCTGATAAAAACTCCTCCTGCAGAACCAGCGACTTTTACCGAGTAAAACCAAACCTCCCAAAGCGCTTCAACCATCCGGAGAAACTCAGAGGATACAGTAAGAAGACGTTGCATCCACTGTACCAAACAACCAATCAGACTTATGGGAGTAAGAAGCCAACGGTTCATGAAATGCCAACTGCTTTCCATGGAACCTGCCGGAAGTTTTCTGAGAACACTCTGAGGTGCGGGATGTATAAAGATAACGGCTTCAACACGACACTGGAGAAAAGTCCAATCACAGGACCAAACGCCATCAATGTTCTTCAGGACAGAATTACCTTCCATCGTTCCGTCTGCTCTGAGAGAAATCAGGAGACTGGAGCTGAAACGTGAAGAGCTGCAGTCGTTTACCATCATTCTGTACTGTTTCAGtccaatacaaatataaatattactgAAAATTATCCCAAGAGACAATAACTTCAAACAAATGCGggataaagtttttatttttatttcaaaagaCACAATAAATCAGCAGTGTCCCAATA

Function

NR:

description
UPF0691 protein C9orf116 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229097.3 True 743 mRNA 0.42 3 36208216 36209659

Neighbor

gene id symbol gene type direction distance location
LOC103036273 pip5k1bb,LOC108412809,LOC108265367,LOC105901155,LOC107664977,LOC106585038 coding downstream 137221 36016893 ~ 36070995 (-)
pola2 pola2,LOC107710902 coding downstream 244055 35956103 ~ 35964161 (-)
LOC111192675 LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 coding downstream 812972 35390808 ~ 35395244 (-)
LOC111192733 NA coding downstream 837256 35367649 ~ 35370960 (-)
LOC103031304 zdhhc12 coding downstream 887428 35316282 ~ 35320788 (-)
anapc7 anapc7 coding upstream 122809 36332468 ~ 36340503 (-)
LOC103035014 rapgef1,rapgef1a,LOC108265900,LOC107557186,LOC107598978 coding upstream 134943 36344602 ~ 36385497 (-)
med27 med27,LOC107665006,LOC107557205,LOC107725311,LOC107757301 coding upstream 203213 36412872 ~ 36492714 (-)
LOC103045855 LOC108438352,LOC108265896 coding upstream 395748 36605407 ~ 36641563 (-)
LOC103045561 phf19,LOC107557185,LOC107599052,LOC106585785 coding upstream 545507 36755166 ~ 36778310 (-)
G56946 NA non-coding downstream 110219 36079787 ~ 36097997 (-)
G56940 NA non-coding downstream 140055 36050378 ~ 36068161 (-)
G56939 NA non-coding downstream 194093 36013407 ~ 36014123 (-)
G56914 NA non-coding downstream 316160 35870251 ~ 35892056 (-)
G56916 LOC103027304 non-coding downstream 334188 35871836 ~ 35874028 (-)
G56967 NA non-coding upstream 10222 36219881 ~ 36221207 (-)
G56966 NA non-coding upstream 11800 36221459 ~ 36225010 (-)
G56982 NA non-coding upstream 21420 36231079 ~ 36233346 (-)
G57001 NA non-coding upstream 88400 36298059 ~ 36341036 (-)
G57000 NA non-coding upstream 104366 36314025 ~ 36331568 (-)
unc45b unc45b other downstream 200229 35993525 ~ 36007987 (-)
LOC103036583 zgc:103670,LOC108412807,LOC107725322,LOC107598984,LOC107698990,LOC107720814,LOC107557201,LOC108265363 other downstream 215714 35971730 ~ 35992502 (-)
mrps36 mrps36 other downstream 260394 35928480 ~ 35947822 (-)
bicdl1 bicdl1,nfkb1,LOC107553048,LOC107724381 other downstream 341132 35831212 ~ 35867084 (-)
G56887 pxn,pxnb,LOC107748058 other downstream 440539 35766770 ~ 35767677 (-)
LOC103023491 fnbp1,LOC107599022,LOC108264955 other upstream 16470 36226129 ~ 36261545 (-)
G56987 atp2a2,atp2a2a,LOC108265716,LOC107580452 other upstream 109397 36319056 ~ 36320695 (-)
G57014 NA other upstream 193191 36402850 ~ 36403298 (-)
LOC107196826 LOC108438352,LOC106580127,LOC108265896,LOC106585786 other upstream 470507 36680166 ~ 36746634 (-)
LOC111192678 phf19 other upstream 575649 36785308 ~ 36792444 (-)

Expression


Co-expression Network