Gene
RNA
| Item | Value |
|---|---|
| gene id | lhx2 |
| gene name | lhx2,lhx2b |
| gene type | coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035902.1 |
| NCBI id | CM008305.1 |
| chromosome length | 52532229 |
| location | 35594983 ~ 35605830 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| symbol | description |
|---|---|
| lhx2b | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including camera-type eye development; nervous system development; and optomotor response. Predicted to be active in nucleus. Is expressed in several structures, including brain; forebrain neural keel; forebrain neural rod; optic vesicle; and retina. Used to study congenital nystagmus and pathologic nystagmus. Orthologous to human LHX2 (LIM homeobox 2). |
| lhx2 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in neuron differentiation; positive regulation of transcription, DNA-templated; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including hair follicle development; maintenance of epithelial cell apical/basal polarity; and nervous system development. Predicted to be part of chromatin. Predicted to be active in nucleus. |
| description |
|---|
| LIM/homeobox protein Lhx2 |
| id | name | namespace |
|---|---|---|
| GO:0021794 | thalamus development | biological_process |
| GO:0021537 | telencephalon development | biological_process |
| GO:0021554 | optic nerve development | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0043010 | camera-type eye development | biological_process |
| GO:0031290 | retinal ganglion cell axon guidance | biological_process |
| GO:0071632 | optomotor response | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| K09373 | LHX2_9; LIM homeobox protein 2/9 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_007229122.3 | True | 3098 | mRNA | 0.52 | 5 | 35594983 | 35605830 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC103030350 | NA | coding | upstream | 157556 | 35405454 ~ 35437427 (+) |
| LOC103030661 | LOC108430371 | coding | upstream | 204811 | 35371911 ~ 35390172 (+) |
| LOC103038477 | fam102aa,LOC108430372,LOC107752986,LOC107671017,LOC107699668,LOC105891604,LOC107754406 | coding | upstream | 229778 | 35341479 ~ 35365205 (+) |
| naif1 | naif1 | coding | upstream | 254913 | 35337272 ~ 35340070 (+) |
| LOC103031612 | NA | coding | upstream | 283496 | 35308625 ~ 35311487 (+) |
| LOC103029489 | NA | coding | downstream | 113119 | 35718949 ~ 35724427 (+) |
| ctu1 | ctu1 | coding | downstream | 121517 | 35727347 ~ 35734257 (+) |
| pxn | pxnb,LOC107754409,LOC107552183 | coding | downstream | 130757 | 35736587 ~ 35770038 (+) |
| gcn1 | gcn1,LOC107552181 | coding | downstream | 168235 | 35774065 ~ 35810149 (+) |
| rab35 | rab35,LOC108430363,LOC107699662,LOC107671023 | coding | downstream | 205610 | 35811440 ~ 35822755 (+) |
| G56672 | NA | non-coding | upstream | 10882 | 35583886 ~ 35584101 (+) |
| G56669 | NA | non-coding | upstream | 17161 | 35577522 ~ 35577822 (+) |
| G56658 | NA | non-coding | upstream | 41231 | 35553381 ~ 35553752 (+) |
| G56655 | NA | non-coding | upstream | 50993 | 35543697 ~ 35543990 (+) |
| G56649 | NA | non-coding | upstream | 64749 | 35529904 ~ 35530234 (+) |
| G56673 | NA | non-coding | downstream | 1993 | 35607823 ~ 35608182 (+) |
| G56707 | NA | non-coding | downstream | 204548 | 35810378 ~ 35836710 (+) |
| G56712 | NA | non-coding | downstream | 221346 | 35827176 ~ 35912416 (+) |
| G56732 | unc45b,LOC106585035 | non-coding | downstream | 392355 | 35998185 ~ 36001333 (+) |
| G56753 | NA | non-coding | downstream | 523226 | 36129056 ~ 36151490 (+) |
| G56504 | NA | other | upstream | 136106 | 35420718 ~ 35458877 (+) |
| LOC103032256 | dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 | other | upstream | 310712 | 35276079 ~ 35284271 (+) |
| ikbkb | ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 | other | upstream | 322455 | 35226485 ~ 35272528 (+) |
| LOC103047498 | NA | other | upstream | 605698 | 34961800 ~ 34989285 (+) |
| G56414 | tcf7l1,LOC107721095,LOC107556226 | other | upstream | 843420 | 34713218 ~ 34751563 (+) |
| G56701 | pola2,LOC107710902,LOC107657899 | other | downstream | 350274 | 35956104 ~ 35964510 (+) |
| G57066 | NA | other | downstream | 1399443 | 37005273 ~ 37005798 (+) |
| agtpbp1 | agtpbp1 | other | downstream | 3503414 | 39109244 ~ 39153476 (+) |
| frmd3 | frmd3,LOC107678471 | other | downstream | 3686241 | 39292071 ~ 39370585 (+) |
| LOC103039219 | iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 | other | downstream | 4361260 | 39967090 ~ 40090271 (+) |
