naif1 (naif1)


Basic Information

Item Value
gene id naif1
gene name naif1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35337272 ~ 35340070 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229125.3
CCGGAGTGTGTTAAGAGTGACGGGTTGTTCAGCCAATAGGGAGGGATCTCGTCACGCTCGCCAAACGCCACAGCCAATAACAAACCACGTTTCTAAAGTGGGCGGGCTTTCGGCCATTACGGACGCAAGCGTTGTTGTTGGAAGAAGAAGTCGATTCAGGAAGCCATTACGCTGCGCAGCTCCGCCGCGGAAAACACGTACTGTTTTTGCGTACGGTACgcactttttttactttccttAAGTCCTAATTAAAGATTATTAATGGCCTCTCAGGCGAAGAAGCGGAAGATGAACTTCTCGGAGCGCGAGGTGGAGATTATAGTGGAGGAGATGGAGAAGCAGAAGCACGTGCTGGTTAATCACTTTAACGCCGGCGTTTCTCACATCGCGAAAAACGGAGCCTGGCTCGAGATCCTGAAGCGCGTGAACGCCGTGACCAACTGCCAGCGCGAGCTCGCGGAGGTGAAGAAGAAGTGGTCGGATCTGAAGACGGAGGTCCGGCGGAAAGTGGCGCAGGCGCGCGCGGCCATGGAGGGCACGGAGGACTGCGGCACGGTGCCCGTGATCCTCACCGCCATGCAGCAGCGGATCTGTAACCTGCTCGGGGAGGCGACGATCATCAGCCTGCCCGCCGGAGAACCGGGAGACCCGCCGGCCGAGATCACCGTGCCCGTTCCCATCAGTTCCGCCGCCGCCGTCACTCTGACGCAAAGTATCCAACCAGCAGCCGGAACAGCTTGtgaaattaaaacattagaCGCTGAGACGACGTATCACACGCTGGAGGAGGGAATGGTGGAGTACTGCACCACGGAAACCCCCGTCACGGTCACCACAGAAGCCCCGGTGGAGATGCTGGCGGCTCAGGCAGATAACTCCGTAAAACCACAGGAGCTGAAGAGCCGCATCGCCCTGAACTCGGCCAAACTGCTGCAGGAGCAGCGCATCACCAACCTGCACGTCCGAGAGATCGCCCAGCACCTGGAGAACCAGAACGACCTGCTGCAGATGATCCGCCGCTCGCAGGAGGCGCAGGCCTGCGCCCAGGAGAGACAGGCCCAGGCGCTGGAGGGCACGCAGGCGGCGCTGCTGGCGCTGATTCAGATGTTCAGACCTGCACTGAAGGACCTGAGGAAGTTCCTGCAGAGCGCCAACAGTGCGGGAGCCGGAGTCGAGGCCGGAGAGGGAGGGGGGAACGTGACGCAGCAGCCGGATGACGGACAGTAGACTGGACTGAGTTCTCtgatgtaaatgaatgaatgaattaatggagtgtgtttgtgtttgttggagaatgctTGAACCTGTAAGTTATTTTGTTCctgagagaatgtgagagagtgtgtgtgtaaatgtgtgtgagagtgtgtgagagtgtgtgtggaagtgtgtgttaAGTTATGCAGGTAAATAGTGCCTCATCAGTCGAGTGCTCGTCTGTGTGTGGAGACTGAAGACTGTACGTGACTGCTGAAACCTGTAGCCAGGAGTCGggcttttattataattttacatgcGTGGCCAGAATTAATTTCACACAAATCTGTCTGTACAGAAGAGcaattgcattttattattattgttattgttatttttatattggaaatatgatagtttagtttatttcactATGTGGTGCTTTAAAAATCTCAATGTCTTTTGTtgaacagaacatgttttattatatttcagaatGGCTTATGATATTACTCACTGAGAATAGTGATGCAATATAACCACAAAAAATAAACTGGTGACTTGAATTGACTATTA
>XM_015603858.2
CCGCCGGAGTGTGTTAAGAGTGACGGGTTGTTCAGCCAATAGGGAGGGATCTCGTCACGCTCGCCAAACGCCACAGCCAATAACAAACCACGTTTCTAAAGTGGGCGGGCTTTCGGCCATTACGGACGCAAGCGTTGTTGTTGGAAGAAGAAGTCGATTCAGGAAGCCATTACGCTGCGCAGCTCCGCCGCGGAAAACACGTACTGTTTTTGCGTACGGTACgcactttttttactttccttAAGTCCTAATTAAAGATTATTAATGGCCTCTCAGGCGAAGAAGCGGAAGATGAACTTCTCGGAGCGCGAGGTGGAGATTATAGTGGAGGAGATGGAGAAGCAGAAGCACGTGCTGGTTAATCACTTTAACGCCGGCGTTTCTCACATCGCGAAAAACGGAGCCTGGCTCGAGATCCTGAAGCGCGTGAACGCCGTGACCAACTGCCAGCGCGAGCTCGCGGAGGTGAAGAAGAAGTGGTCGGATCTGAAGACGGAGGTCCGGCGGAAAGTGGCGCAGGCGCGCGCGGCCATGGAGGGCACGGAGGACTGCGGCACGGTGCCCGTGATCCTCACCGCCATGCAGCAGCGGATCTGTAACCTGCTCGGGGAGGCGACGATCATCAGCCTGCCCGCCGGAGAACCGGGAGACCCGCCGGCCGAGATCACCGTGCCCGTTCCCATCAGTTCCGCCGCCGCCGTCACTCTGACGCAAAGTATCCAACCAGCAGCCGGAACAGCTTGtgaaattaaaacattagaCGCAGCTGAGACGACGTATCACACGCTGGAGGAGGGAATGGTGGAGTACTGCACCACGGAAACCCCCGTCACGGTCACCACAGAAGCCCCGGTGGAGATGCTGGCGGCTCAGGCAGATAACTCCGTAAAACCACAGGAGCTGAAGAGCCGCATCGCCCTGAACTCGGCCAAACTGCTGCAGGAGCAGCGCATCACCAACCTGCACGTCCGAGAGATCGCCCAGCACCTGGAGAACCAGAACGACCTGCTGCAGATGATCCGCCGCTCGCAGGAGGCGCAGGCCTGCGCCCAGGAGAGACAGGCCCAGGCGCTGGAGGGCACGCAGGCGGCGCTGCTGGCGCTGATTCAGATGTTCAGACCTGCACTGAAGGACCTGAGGAAGTTCCTGCAGAGCGCCAACAGTGCGGGAGCCGGAGTCGAGGCCGGAGAGGGAGGGGGGAACGTGACGCAGCAGCCGGATGACGGACAGTAGACTGGACTGAGTTCTCtgatgtaaatgaatgaatgaattaatggagtgtgtttgtgtttgttggagaatgctTGAACCTGTAAGTTATTTTGTTCctgagagaatgtgagagagtgtgtgtgtaaatgtgtgtgagagtgtgtgagagtgtgtgtggaagtgtgtgttaAGTTATGCAGGTAAATAGTGCCTCATCAGTCGAGTGCTCGTCTGTGTGTGGAGACTGAAGACTGTACGTGACTGCTGAAACCTGTAGCCAGGAGTCGggcttttattataattttacatgcGTGGCCAGAATTAATTTCACACAAATCTGTCTGTACAGAAGAGcaattgcattttattattattgttattgttatttttatattggaaatatgatagtttagtttatttcactATGTGGTGCTTTAAAAATCTCAATGTCTTTTGTtgaacagaacatgttttattatatttcagaatGGCTTATGATATTACTCACTGAGAATAGTGATGCAATATAACCACAAAAAATAAACTGGTGACTTGAATTGACTATTA

Function

symbol description
naif1 Predicted to act upstream of or within apoptotic process. Predicted to be active in nucleus. Orthologous to human NAIF1 (nuclear apoptosis inducing factor 1).

NR:

description
PREDICTED: nuclear apoptosis-inducing factor 1

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K23221 NAIF1; nuclear apoptosis-inducing factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229125.3 False 1773 mRNA 0.52 3 35337275 35340070
XM_015603858.2 True 1779 mRNA 0.52 3 35337272 35340070

Neighbor

gene id symbol gene type direction distance location
LOC103031612 NA coding upstream 25785 35308625 ~ 35311487 (+)
gle1 gle1,LOC102792584 coding upstream 28826 35299794 ~ 35308446 (+)
mrpl40 LOC107753002,LOC107671004,LOC107754402,LOC107559600 coding upstream 41270 35293923 ~ 35296002 (+)
polb polb coding upstream 62651 35265968 ~ 35274621 (+)
enkd1 enkd1,LOC107670972 coding upstream 71922 35259920 ~ 35265350 (+)
LOC103038477 fam102aa,LOC108430372,LOC107752986,LOC107671017,LOC107699668,LOC105891604,LOC107754406 coding downstream 1409 35341479 ~ 35365205 (+)
LOC103030661 LOC108430371 coding downstream 31841 35371911 ~ 35390172 (+)
LOC103030350 NA coding downstream 65384 35405454 ~ 35437427 (+)
lhx2 lhx2,lhx2b coding downstream 254913 35594983 ~ 35605830 (+)
LOC103029489 NA coding downstream 378879 35718949 ~ 35724427 (+)
G56492 zdhhc12,LOC107560045,LOC106955948 non-coding upstream 16499 35319879 ~ 35320773 (+)
G56487 seta,LOC103031932,LOC107752982,LOC107699670,LOC108265615,LOC107754404,LOC107671021 non-coding upstream 21717 35312115 ~ 35315555 (+)
G56482 NA non-coding upstream 49800 35285451 ~ 35287472 (+)
G56479 NA non-coding upstream 83270 35253318 ~ 35254002 (+)
LOC111192732 NA non-coding upstream 118490 35217891 ~ 35218782 (+)
G56499 NA non-coding downstream 52232 35392302 ~ 35468036 (+)
G56649 NA non-coding downstream 189834 35529904 ~ 35530234 (+)
G56655 NA non-coding downstream 203627 35543697 ~ 35543990 (+)
G56658 NA non-coding downstream 213311 35553381 ~ 35553752 (+)
G56669 NA non-coding downstream 237452 35577522 ~ 35577822 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other upstream 53001 35276079 ~ 35284271 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other upstream 64744 35226485 ~ 35272528 (+)
LOC103047498 NA other upstream 347987 34961800 ~ 34989285 (+)
G56414 tcf7l1,LOC107721095,LOC107556226 other upstream 585709 34713218 ~ 34751563 (+)
fgf17 fgf17,LOC103025711,LOC107698084,LOC107678395,LOC107721084 other upstream 825588 34503114 ~ 34511684 (+)
G56504 NA other downstream 80648 35420718 ~ 35458877 (+)
G56701 pola2,LOC107710902,LOC107657899 other downstream 616034 35956104 ~ 35964510 (+)
G57066 NA other downstream 1665203 37005273 ~ 37005798 (+)
agtpbp1 agtpbp1 other downstream 3769174 39109244 ~ 39153476 (+)
frmd3 frmd3,LOC107678471 other downstream 3952001 39292071 ~ 39370585 (+)

Expression


Co-expression Network