LOC103031612


Basic Information

Item Value
gene id LOC103031612
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35308625 ~ 35311487 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229127.3
GGAAttgaatgtaatttaatgtagctTGATACGGTCAGTGAGTGGCTGTTGATCCTCCCTCCTGCGGGGGGcggtgtttcagtgctggtttTAATTCTCTGTGTGGAGTTTTTGGGGGAGGGTGGTTGAACTCAGCTTTAATGCTTTATTTGTTGCTGATGATCATGGTGATTTGGgttctgtaaaaaataatgggTTTTCTGAGGGGTTTTATGTAGTAAAATCAGTGATCTGAGCTGCTGATTCCCGTGTAATAAAGCGTAACTCTGCCTTAAACACCCCCCGCCCCGCTGCTCTGCTGCCCGGGctgcgctgctgctgccgcgGCGGAGCGGAGAGATGGTCCGGGTGCGGAGGCGCCGCGCCGCCGCGCTCTCAGTAATAAACTCTCCCCCGGCGCTCTGGATCCTCTCAGTGGCCGCAGTGCTGCTTCAGGAGGCGGGCGTGTGTGGAGCCTGCGCCGCCGCGGAGGGGCTGCTGCTCTGCAGGTCCTGCGGGCATGAGGTGGCTCTGGAGCGGGACGTGAGCTTCGTGCCCAGCCGCCTGGCTCTCTCTCACCGGAACAACACGGTGCTCGGGGAGCGGAGGATCACCGTGCAGCTCTTCGAGAACCCGCAGGGCTTCCAGTACGAGGTGCTCACCTTAAAAAAGGCGGACGTGCTGAAGCACTGGCCGGCGGATAAACATTTCACCTGGTTTCCGGGCTTCTCGTGGACTGTAGCCACCTGCCCGCGATGCAAAACACACCTAGgctGGGCCTTCCAACCAACCGATTGGCCTCAGACAGTAACAAGGCAGGACTTTGAGGACTCGGATCAGACTTTTGTGGCGCTTATTGTACAGAGACTACTGCAGGAGCAGTTCGCCTCCACACTTCTGATGACCCCAAACTCTTTTAGAAGTTGACAGAAAATTCTCTTCTTTAATTTCCACTCAAAGGGCTTATTAAAAACGAAAGGGCTTTAAAAACACCACCAGTCCCTTTCCCctttacaaaaacacacagaaacccacccaataaaaaaaaacttttgttacCCCTTTCATCCGTCTCAGCCAATGACTGTATACAAGCTATTAGAGTTGGAGAAGTCTCAAACATGGTGTTcacatttaagttttattttaaacaaagcaaactCAACAGCTAGTTTTCTCCTGTGAGAAGTTGATAAGGTTAGTAGAACATACACCACACAAAACTTAGGCTAACCGAGGCAGTGGGGGGCCAAAATTTACaagcatgatttttttaaacttttttttttttgaagattttatttttctttatcaaAAACGTCATTTCAAATCTGATGAATGTCTGTAAAacaagacgagatttaaaaaaccaaaacaaaaggaaaaatcCAAACCGTGTCCAAATACCCTCTTCTTTCCTCCCTCAGCCCTCACTGAGACTTGAGCCCTCCTGAACTGACAAAAGGTTACAGAGGGGACGGGAACTCAGCCTGTGATCTATATCTGTTGCTGAAACCACAAGCTTAGAAGAAAAACTTAACCAGAAGGAAATAATTCATGAACAGGTTGTAACGCCATGAGTAAAGTAACAAAGCCGTGAAGGAGGATGCTAGTACTAGCACATCACTACGCACCATGGCTTTTGTTCATTTAACCACACAAACAGGAAGAAtccatatacatttatatatataaaagaaaacgCTATTTGCAAGTCTACTCCAGACAGCGTGCTGCTGATtctacagtgtgtttttttttatatacctcAAAATTTACTTGGGAACTGAGATGTTAAATGCCACATTGGCAGTATTTTGCAGTCAGTTTATTGTGAGTCTCTTCTGGGATGGGGGGAATTCAAAATGGCACTGTCATGATAAAGAACAGGAGATGGAGCACAAAAACAacttgggggggg

Function

GO: NA

KEGG:

id description
ko03440 Homologous recombination

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229127.3 True 1900 mRNA 0.47 2 35308625 35311487

Neighbor

gene id symbol gene type direction distance location
gle1 gle1,LOC102792584 coding upstream 179 35299794 ~ 35308446 (+)
mrpl40 LOC107753002,LOC107671004,LOC107754402,LOC107559600 coding upstream 12623 35293923 ~ 35296002 (+)
polb polb coding upstream 34004 35265968 ~ 35274621 (+)
enkd1 enkd1,LOC107670972 coding upstream 43275 35259920 ~ 35265350 (+)
LOC103034472 NA coding upstream 112960 35191804 ~ 35195665 (+)
naif1 naif1 coding downstream 25785 35337272 ~ 35340070 (+)
LOC103038477 fam102aa,LOC108430372,LOC107752986,LOC107671017,LOC107699668,LOC105891604,LOC107754406 coding downstream 29992 35341479 ~ 35365205 (+)
LOC103030661 LOC108430371 coding downstream 60424 35371911 ~ 35390172 (+)
LOC103030350 NA coding downstream 93967 35405454 ~ 35437427 (+)
lhx2 lhx2,lhx2b coding downstream 283496 35594983 ~ 35605830 (+)
G56482 NA non-coding upstream 21153 35285451 ~ 35287472 (+)
G56479 NA non-coding upstream 54623 35253318 ~ 35254002 (+)
LOC111192732 NA non-coding upstream 89843 35217891 ~ 35218782 (+)
G56465 NA non-coding upstream 109357 35197445 ~ 35199268 (+)
G56459 NA non-coding upstream 131646 35171898 ~ 35176979 (+)
G56487 seta,LOC103031932,LOC107752982,LOC107699670,LOC108265615,LOC107754404,LOC107671021 non-coding downstream 628 35312115 ~ 35315555 (+)
G56492 zdhhc12,LOC107560045,LOC106955948 non-coding downstream 8392 35319879 ~ 35320773 (+)
G56499 NA non-coding downstream 80815 35392302 ~ 35468036 (+)
G56649 NA non-coding downstream 218417 35529904 ~ 35530234 (+)
G56655 NA non-coding downstream 232210 35543697 ~ 35543990 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other upstream 24354 35276079 ~ 35284271 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other upstream 36097 35226485 ~ 35272528 (+)
LOC103047498 NA other upstream 319340 34961800 ~ 34989285 (+)
G56414 tcf7l1,LOC107721095,LOC107556226 other upstream 557062 34713218 ~ 34751563 (+)
fgf17 fgf17,LOC103025711,LOC107698084,LOC107678395,LOC107721084 other upstream 796941 34503114 ~ 34511684 (+)
G56504 NA other downstream 109231 35420718 ~ 35458877 (+)
G56701 pola2,LOC107710902,LOC107657899 other downstream 644617 35956104 ~ 35964510 (+)
G57066 NA other downstream 1693786 37005273 ~ 37005798 (+)
agtpbp1 agtpbp1 other downstream 3797757 39109244 ~ 39153476 (+)
frmd3 frmd3,LOC107678471 other downstream 3980584 39292071 ~ 39370585 (+)

Expression


Co-expression Network