LOC103031932 (seta,LOC103031932,LOC107752982,LOC107699670,LOC108265615,LOC107754404,LOC107671021)


Basic Information

Item Value
gene id LOC103031932
gene name seta,LOC103031932,LOC107752982,LOC107699670,LOC108265615,LOC107754404,LOC107671021
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35310689 ~ 35315573 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229128.3
GGGGCGCGTTCTCTCCAGAAGAGAGCGCGTGAGTGTAGTCGccgagtgtgtgtgcgcgcgcgtgtgcACTGCtacagttgtgtgtgtggtggcgCGTTGTGTGTATTCGCGTTTCCTCGCTTTAAGTTGTGCTGAGAAGCGCAGCAGCACAATTTCGGTGCGCTAGTTTCCGCCTTTCCCGCTCAAACAGGCTCTTCTCTACCGCAGGAGTTTTTACCGAGTCTTCGCTGAGAGTCGGTTCGCGTTACTTTTCCTCAGACAGCGGCATCATGTCTGCCTCGGCGGCCAAAGTGAGTAAAAAGGAGCTGAACTCGAACCACGACGGCGCGGACGAGACCTCCGaaAAAGAGCAACAAGAAGCCATCGAGCACATTGACGAAGTACAGAATGAAATTGACAGACTGAACGAACAGGCCAGCGAAGAGATCCTCAAAGTTGAGCAGAAATACAACAAGCTTCGCCAGCCGTTCTTTCAGAAGAGATCAGAACTCATTGCCAAAATTCCAAACTTTTGGGTCACTACATTCGTGAACCACCCACAAGTCTCTGCTCTCCTTGGTGAAGAGGATGAAGAGGCACTCCACTACCTGACCAGGGTGGAAGTAACGGAGTTTGAAGACATAAAATCAGGCTACAGAATAGATTTTTACTTCGATGAGAACATGTATTTCGAAAACAAAGTCCTCTCCAAAGAAATTCATCTGAACGAAAGTGGAGATCCAACCCCAAAATCAACAGAGATCAAATGGAAACCTGGAAAGGACCTCACAAATCGTCCTAGCCAAACTCAGAGTAAAGCAGGCAAGAAGAGGCAACATGAAGAGCCGGAGAGCTTTTTCACCTGGTTCACTGACCACTCCGACTCAGGAGCAGATGAACTTGGGGAGGTTATCAAGGATGACATCTGGCCCAACCCCCTGCAGTACTACCTGGTCCCAGACATGGAAGAtgaagaaggagagggagaggatgaggatgaagatgaggaaggTCTGGAAGACATTGATGAAGAAGGGGAGGAAGAtggagaggaagaggatgatgaTGGAGAGgatgatgatggtgaagACGACTGAGGAGAAAAACGTTCAGCATAATCCCTTTTTACCTGGCCCCGCCCACAACCCACCtgcttcttctttatttttattttatttttttgggagCAATTTTTTCCCTgtttcccccccccccaagtTGTTTTTGTGCTCCATCTCCTGTTCTTTATCATGACAGTGCCATTTTGAATTCCCCCCATCCCAGAAGAGACTCACAATAAACTGACTGCAAAATACTGCCAATGTGGCATTTAACATCTCAGTTCCCAAGTAAATTTTgaggtatataaaaaaaaacacactgtagaATCAGCAGCACGCTGTCTGGAGTAGACTTGCAAATAGcgttttcttttatatatataaatgtatatggaTTCTTCCTGTTTGTGTGGTTAAATGAACAAAAGCCATGGTGCGTAGTGATGTGCTAGTACTAGCATCCTCCTTCACGGCTTTGTTACTTTACTCATGGCGTTACAACCTGTTCATGAATTATTTCCTTCTGGTTAAGTTTTTCTTCTAAGCTTGTGGTTTCAGCAACAGATATAGATCACAGGCTGAGTTCCCGTCCCCTCTGTAACCTTTTGTCAGTTCAGGAGGGCTCAAGTCTCAGTGAGGGCTGAGGGAGGAAAGAAGAGGGTATTTGGACACGGTTTGgatttttccttttgttttggttttttaaatctcgtcttgtTTTACAGACATTCATCAGATTTGAAATGACGTTTttgataaagaaaaataaaatcttcaaaaaaaaaaaagtttaaaaaaatcatgcttGTAAATTTTGGCCCCCCACTGCCTCGGTTAGCCTAAGTTTTGTGTGGTGTATGTTCTACTAACCTTATCAACTTCTCACAGGAGAAAACTAGCTGTTGagtttgctttgtttaaaataaaacttaaatgtgAACACCA

Function

symbol description
seta Predicted to enable chromatin binding activity and histone binding activity. Predicted to act upstream of or within nucleosome assembly. Predicted to be active in chromatin and nucleus. Is expressed in central nervous system; optic cup; otic vesicle; and sensory system. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability. Orthologous to several human genes including SET (SET nuclear proto-oncogene).

NR:

description
protein SET-like

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K11290 SET, TAF1, I2PP2A; template-activating factor I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229128.3 True 1985 mRNA 0.44 8 35310689 35315573

Neighbor

gene id symbol gene type direction distance location
rpl6 rpl6,LOC107699672,LOC107671003,LOC107559598 coding downstream 26399 35279823 ~ 35284290 (-)
vdac3 vdac3,LOC107754399,LOC107560056 coding downstream 51457 35246793 ~ 35259232 (-)
plat NA coding downstream 93924 35198480 ~ 35216765 (-)
LOC103040650 NA coding downstream 120732 35178158 ~ 35189957 (-)
LOC103043388 LOC108412499,LOC107559593,LOC107754396 coding downstream 134728 35135751 ~ 35175961 (-)
LOC103031304 zdhhc12 coding upstream 709 35316282 ~ 35320788 (-)
LOC111192733 NA coding upstream 52076 35367649 ~ 35370960 (-)
LOC111192675 LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 coding upstream 75235 35390808 ~ 35395244 (-)
pola2 pola2,LOC107710902 coding upstream 640530 35956103 ~ 35964161 (-)
LOC103036273 pip5k1bb,LOC108412809,LOC108265367,LOC105901155,LOC107664977,LOC106585038 coding upstream 701320 36016893 ~ 36070995 (-)
G56602 NA non-coding downstream 31799 35275947 ~ 35278890 (-)
G56600 polb non-coding downstream 38399 35265893 ~ 35272290 (-)
G56580 NA non-coding downstream 133710 35176438 ~ 35176979 (-)
G56569 NA non-coding downstream 227416 35081003 ~ 35083273 (-)
G56562 NA non-coding downstream 238930 35071316 ~ 35071759 (-)
G56620 NA non-coding upstream 35252 35350825 ~ 35367301 (-)
G56631 NA non-coding upstream 69205 35384778 ~ 35460652 (-)
G56645 NA non-coding upstream 122260 35437833 ~ 35440647 (-)
G56656 NA non-coding upstream 228138 35543711 ~ 35543995 (-)
G56678 NA non-coding upstream 237263 35552836 ~ 35553987 (-)
c6h22orf39 NA other downstream 10939 35296341 ~ 35299750 (-)
acaa2 acaa2,LOC107671002 other downstream 17268 35285422 ~ 35293421 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other downstream 202269 35090730 ~ 35108420 (-)
LOC103023237 NA other downstream 2133039 33149074 ~ 33177650 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other downstream 2508529 32772027 ~ 32802160 (-)
LOC103038782 slc25a25a,LOC108430373,LOC107754405,LOC107671014,LOC107699669,LOC107560063,LOC107559565,LOC107752985 other upstream 6412 35321985 ~ 35332434 (-)
G56638 NA other upstream 105257 35420830 ~ 35458874 (-)
G56887 pxn,pxnb,LOC107748058 other upstream 451197 35766770 ~ 35767677 (-)
bicdl1 bicdl1,nfkb1,LOC107553048,LOC107724381 other upstream 515639 35831212 ~ 35867084 (-)
mrps36 mrps36 other upstream 612907 35928480 ~ 35947822 (-)

Expression


Co-expression Network