rpl6 (rpl6,LOC107699672,LOC107671003,LOC107559598)


Basic Information

Item Value
gene id rpl6
gene name rpl6,LOC107699672,LOC107671003,LOC107559598
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35279823 ~ 35284290 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229130.3
CGTATATATAGGTGAAAGTCCCGGATGTCGGTCTTTTTTCCCTAGCTAAAGATGGCTGAGGGCGATAAGAAGAAGAAGGTCGCCCGTAAGGCGCACTGCAGCCGTAACCCCGTCTTGGCCAGGGGCATCGGCCGCTTCTCTCGCTCCGCCATGTTCGCCAGGCGGGCCATGTACAAGAGGAAGACCAAAGCACCTGAAACCAAGATTGAGAAGAAGCTGAAGGACAAGACCCCCACCACCGCCGTCAAAACTGTTGGTGGAGACAAGAATGGAGGCACCCGTGTCGTCAGACTGCGCAAGATGCCCCGTTATTACCCTACGGAGAATCCTCCCCGTAAGCTGCGGAGTCACGGCATCAAGCCCTTCTCTCAGCACAGGAGGAAGCTGCGCTCCTCAATCAGCCCTGGAACTGTGCTCATCATGCTCACCGGGCGCCACCGCGGAAAGcgcGTGGTCTTCCTGAAGCAGCTGGGTAGTGGTCTCCTGCTGGTCACTGgACCCCTGGCCATCAACAGGGTTCCTCTTCGCAGAGCCCATCAGAAGTTCTGCATCGCCACGTCCACCAAGCTGGACATCTCCGGCGTCAAGATCCCCAAAAATCTGAATGACGCTTACTTCAAGAAGAAGAAGCTCAGGAAGCCCAAACACCAGGAGGGAGAGATCTTCGACACCGAGAAAGAGAAGTACCAGCTGACGGAGCAGAGGAAGGAGGATCAGAAAGCTGTGGATAAACAGCTTTTGCCTCTCATTAGAAATTTCCCTCACCTGAAGGGGTACCTGCGCTCTCAGTTCTTCCTGTCTAACGGAGTGTACCCACACAAACtgattttctaaaatgttaataaacagtTGCTCCAACCCACAAA

Function

symbol description
rpl6 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development and pancreas development. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in digestive system; endodermal cell; epithelial cell of pancreas; and lens. Orthologous to human RPL6 (ribosomal protein L6).

NR:

description
PREDICTED: 60S ribosomal protein L6

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02934 RP-L6e, RPL6; large subunit ribosomal protein L6e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229130.3 True 866 mRNA 0.54 7 35279823 35284290

Neighbor

gene id symbol gene type direction distance location
vdac3 vdac3,LOC107754399,LOC107560056 coding downstream 20591 35246793 ~ 35259232 (-)
plat NA coding downstream 63058 35198480 ~ 35216765 (-)
LOC103040650 NA coding downstream 89866 35178158 ~ 35189957 (-)
LOC103043388 LOC108412499,LOC107559593,LOC107754396 coding downstream 103862 35135751 ~ 35175961 (-)
LOC103038635 slc25a1b,slc25a1,LOC108412497,LOC107754397,LOC107657208,LOC107722854,LOC107670994,LOC105898475 coding downstream 148877 35115510 ~ 35130946 (-)
LOC103031932 seta,LOC103031932,LOC107752982,LOC107699670,LOC108265615,LOC107754404,LOC107671021 coding upstream 26399 35310689 ~ 35315573 (-)
LOC103031304 zdhhc12 coding upstream 31992 35316282 ~ 35320788 (-)
LOC111192733 NA coding upstream 83359 35367649 ~ 35370960 (-)
LOC111192675 LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 coding upstream 106518 35390808 ~ 35395244 (-)
pola2 pola2,LOC107710902 coding upstream 671813 35956103 ~ 35964161 (-)
G56602 NA non-coding downstream 933 35275947 ~ 35278890 (-)
G56600 polb non-coding downstream 7533 35265893 ~ 35272290 (-)
G56580 NA non-coding downstream 102844 35176438 ~ 35176979 (-)
G56569 NA non-coding downstream 196550 35081003 ~ 35083273 (-)
G56562 NA non-coding downstream 208064 35071316 ~ 35071759 (-)
G56620 NA non-coding upstream 66535 35350825 ~ 35367301 (-)
G56631 NA non-coding upstream 100488 35384778 ~ 35460652 (-)
G56645 NA non-coding upstream 153543 35437833 ~ 35440647 (-)
G56656 NA non-coding upstream 259421 35543711 ~ 35543995 (-)
G56678 NA non-coding upstream 268546 35552836 ~ 35553987 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other downstream 171403 35090730 ~ 35108420 (-)
LOC103023237 NA other downstream 2102173 33149074 ~ 33177650 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other downstream 2477663 32772027 ~ 32802160 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other downstream 3539602 31731464 ~ 31740221 (-)
LOC103027498 LOC108411246,LOC106585447 other downstream 3589015 31635481 ~ 31690808 (-)
acaa2 acaa2,LOC107671002 other upstream 1132 35285422 ~ 35293421 (-)
c6h22orf39 NA other upstream 12051 35296341 ~ 35299750 (-)
LOC103038782 slc25a25a,LOC108430373,LOC107754405,LOC107671014,LOC107699669,LOC107560063,LOC107559565,LOC107752985 other upstream 37695 35321985 ~ 35332434 (-)
G56638 NA other upstream 136540 35420830 ~ 35458874 (-)
G56887 pxn,pxnb,LOC107748058 other upstream 482480 35766770 ~ 35767677 (-)

Expression


Co-expression Network