mrpl40 (LOC107753002,LOC107671004,LOC107754402,LOC107559600)


Basic Information

Item Value
gene id mrpl40
gene name LOC107753002,LOC107671004,LOC107754402,LOC107559600
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35293923 ~ 35296002 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229132.3
ATGCGCACTGACCCGCACACAGCCAAGGTGGGTTAGTTACTACAGTTAGCCTGTCCGCTAAAGCAGGAGTCAGACAGGTTTTCTATAATACagataaataaagttaaattagtttaatatgTCGGCGATTTTATATCGCAGCGCGGCCCAGTTACTATCATCACCAGCTTTACCGGCGGGCTGCAGGTCTGCTGTTAGTAACGTTACCTCTGTTAGACACAGCCACTGGTTTACCTCTGTGCTCTCGCTGAAGACTACAGTGCCCCTAAGAGCAGAGccgaggaagaagaagaaagttgACCCTCGCCGTGATCTTATAGTAAAAGAGAGACTGAAGAAAAAGCTGAAGAAACTTGAGAAAGTCCCTCCTGAACTCATTCCTATTGAAGACTTCATAATTCCAGCCAAGTGCTTTGATGAGACCAGAGTGCGTGGTACTCCCAGGCTGTCTTttgaagagagcgagagaagggCTCTGCTGCTGAAGGAATGGTCTCGATTTAAATACTCGCAGCACCAGGCCGAGACGGCGGACATCAACGAGGCTCTGAAGGCTCAAACACAAGCTTTAGAGGAGCTGAAACTGGAATCAGAGGAGCTCTACAACGCAGCAGTTAGTCCTGACCTAAGCCTCTTCCCCTTCCAGCACCAGGGTCCCAGCTTTACTCCACCTCTTACAAACTACGAGGCTCCTGACGGCAAATACAGTGACATTACACGAGTGTACACTCAGTGATCAGCTGGCATCACGAATTCAGAAACGTGTTACAGAACTGTTCCTCCAGTTCGCTGTTCTCACAGGGCATCTCCTGCTCTGAAATGGTTGGATCTGTGTTCAAAGACGATTTTGACGTGAACTTTAGTACTGAAAGTACTGAACTCATCTACTTCCCTTCTGTAGAGAAGAGCCTATGTGAACTTGGATTCTTATGTGAATGAAATACAGTCTGTGCtcagtcaaaataaaaaaattaccgGCACTCTCAT

Function

NR:

description
39S ribosomal protein L40, mitochondrial

GO: NA

KEGG:

id description
K17421 MRPL40; large subunit ribosomal protein L40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229132.3 True 987 mRNA 0.47 4 35293923 35296002

Neighbor

gene id symbol gene type direction distance location
polb polb coding upstream 19302 35265968 ~ 35274621 (+)
enkd1 enkd1,LOC107670972 coding upstream 28573 35259920 ~ 35265350 (+)
LOC103034472 NA coding upstream 98258 35191804 ~ 35195665 (+)
snap29 snap29,LOC107722859,LOC107560055,LOC107726963 coding upstream 204738 35083719 ~ 35089185 (+)
LOC103037259 pi4ka,LOC108440297,LOC107671001 coding upstream 210631 35039169 ~ 35083292 (+)
gle1 gle1,LOC102792584 coding downstream 3792 35299794 ~ 35308446 (+)
LOC103031612 NA coding downstream 12623 35308625 ~ 35311487 (+)
naif1 naif1 coding downstream 41270 35337272 ~ 35340070 (+)
LOC103038477 fam102aa,LOC108430372,LOC107752986,LOC107671017,LOC107699668,LOC105891604,LOC107754406 coding downstream 45477 35341479 ~ 35365205 (+)
LOC103030661 LOC108430371 coding downstream 75909 35371911 ~ 35390172 (+)
G56482 NA non-coding upstream 6451 35285451 ~ 35287472 (+)
G56479 NA non-coding upstream 39921 35253318 ~ 35254002 (+)
LOC111192732 NA non-coding upstream 75141 35217891 ~ 35218782 (+)
G56465 NA non-coding upstream 94655 35197445 ~ 35199268 (+)
G56459 NA non-coding upstream 116944 35171898 ~ 35176979 (+)
G56487 seta,LOC103031932,LOC107752982,LOC107699670,LOC108265615,LOC107754404,LOC107671021 non-coding downstream 16113 35312115 ~ 35315555 (+)
G56492 zdhhc12,LOC107560045,LOC106955948 non-coding downstream 23877 35319879 ~ 35320773 (+)
G56499 NA non-coding downstream 96300 35392302 ~ 35468036 (+)
G56649 NA non-coding downstream 233902 35529904 ~ 35530234 (+)
G56655 NA non-coding downstream 247695 35543697 ~ 35543990 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other upstream 9652 35276079 ~ 35284271 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other upstream 21395 35226485 ~ 35272528 (+)
LOC103047498 NA other upstream 304638 34961800 ~ 34989285 (+)
G56414 tcf7l1,LOC107721095,LOC107556226 other upstream 542360 34713218 ~ 34751563 (+)
fgf17 fgf17,LOC103025711,LOC107698084,LOC107678395,LOC107721084 other upstream 782239 34503114 ~ 34511684 (+)
G56504 NA other downstream 124716 35420718 ~ 35458877 (+)
G56701 pola2,LOC107710902,LOC107657899 other downstream 660102 35956104 ~ 35964510 (+)
G57066 NA other downstream 1709271 37005273 ~ 37005798 (+)
agtpbp1 agtpbp1 other downstream 3813242 39109244 ~ 39153476 (+)
frmd3 frmd3,LOC107678471 other downstream 3996069 39292071 ~ 39370585 (+)

Expression


Co-expression Network