gle1 (gle1,LOC102792584)


Basic Information

Item Value
gene id gle1
gene name gle1,LOC102792584
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35299794 ~ 35308446 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229134.3
TAAAAGTCCCACAGTCCAAATCTGCCGCTTGGTAGAATATTAGCTAAACTAaactaggctaagctaagctttatgtttaaagttttaccGAAATGGCAGCAGATAATTTAAGGTGGGACACGCTGGAGGCTTTAAAAAACTCTTCGAAGGGTAAACTCAAATACAGCCCAGACTGGCTGGAGAAAGGGGAGGATATTCTCGCAGGCTGTAAAGAGGTTACCAGCCTCTCGCCTCTATCAGGTGCTATTCTGAAGAGACTGAGCCCTCGACCTCTGCTCAAAAACTGTTCACTGGGTTCTCCCATCCGTGATACGAGTCTTTCCACCTCTGAAGATGTTCCTTTCTGCAGTTCAGCTCCCATCAGTCCACACCACACCCTCACCTCTCCGTTATCACCTGCCACCTCGCCTCCGCTGGCCTCTATTGAAAGTGAAGAGAAgGTAAATGAGGATAAACTGGAAAATTCACACTCCACAGTGGACCTCAGCCCTGTTCCCTGCAGCACTCCACCACCAGCAATCTCCCTCCTTTCTCCTAGAGCCTCTCAGATGGCAGGGTGTATTCGTATCTGTGAGGAAAAACATCGATCTAAAGCCAAGGCGGAGTTGAGTCTGAGGCAGGAGCTGCAGGAGAGGCTGGTAGCTACTGTGGCCAGCCGTGAGTCTGAGCAGCTGAAACGCTTTGAGGAGTTTATGGAGCTCAAACAGAGGCAGGAGTATCAGAGCGTGAGGGACATGGTGGAAAAAGACACGCAGGAAACCCTCGGCCGACAAGAGAAACTGAAGGAGGAGCACAGACATAGAATGAAGATCCTGAACCTGCGTCTGAGGGAGGCGGAGCAGCAGCGGCTTCGAGAGGCGGAGCTGGAGAAGCAGAGACTGGTGGAGGGCAGGGAGAGGCTGAGGACACTTAATGCCATTCAGGAGGAGGTTCTTCAGCTCAATCAGCTCCTCGAACCTTCATCCTCCACACAGACGGGGCTCACCGTGGATCACACGTCTTATATCACCCGCGGCAACCAGCTGTGCTCACAAGTATCGGAGGTGGTGCGCACCACGGCGGAAGGACAGTTTCCTAGTGTGGAGGACATGACTGTAGCAGAACGGGCCCTGCAAGAAATGAGGTCGCTCCTCAGAGCCTTGCAGGAGGGAGTGGCTCAtgctcaggaaaggaagaagaAGGAGCAGGAGAAAGAAGAGGAGATGAAGAAACAGGCAGAACTGAAAGCCCAGCAGGAGGAGCAGAAGAAGAGCGCAGCGGCATCTGCTAAAGAGAAATCCAGAAAACAAGGTCTGCAGAATAGCGCTGAAGAAAGCACCTTAAAATGGTACAAAGAGCTGCAGGAAACGGCAAACCAGTGCGGTCAGGCTTTTGAAGACCTGAACAACACCAAAGATATGCAGACAAAGAAATTGAGGATGGAACTCCAGAAGGCAGCCACAATTCCTGTCAGCCAGATCTCCAGCATTTCAGGCTCTCAGCTAAAGGAGATTTTTGACAAGATAGACAAGTTGTTATCGGGGCGTCCAACTGTGTCTGGTGGGAAGTCCGTGTCCACGTCCCATCATCCCCATGGACTGGAATATGTTAGCTATAAATTAGCAGAGAAATTTGTGAAACAAGGGGAGGAGGAGGTGGCGTCTCATCACGAGGCGGCGTTCCCTATCGCGGTGGTGGCCTCGGGAATATGGGAGCTGCACCCTAAAGTAGGAGACCTCATACTGGCCCATCTCCACAAGAAGTGTCCTTACTCTGTTCCACACTACCCACCTATGAAGGACGGGACCTCCATGGAGGAGTACCAGAGGATTCTGGGATATCGTGTAGATGAGTCTGGTGTGGAGGTGCAGGACAGTTTCCTGAAGAGGATGTCTGGGATGATCCGGCTATATGCAGCTATAATACAGCTAAGATGGCCACACAGCAACAAACAAGGGCCTGATCCTCATGGACTTAATCACGGTTGGCGTTGGTTGGCACAAATGCTGAACATGGAGCCCCTTGCTGACGTCACAGCAACACTCCTGTTTGATTTTCTGGAGGtctgtggaaatgctcttatgAAACAATATCAAGGGCAGTTCTGGAAACTTCTGCTGCTCATCAAAGAGGAGTATTTCCCCAGgatTAAAGCCGTCACCAGCGCTGGTCAGATGGGTTCAGTAACTAGACTCAATCAGTTTTTAGAGAACTCTTTAAGGAAAAAGCAGATTGATCCACCGAAAGGACAACTAACTTCATCCTTCTGGAGATCTTgatgttttttaagaaatatagtCAAATCCAAGGCATACTTCATATAATGACGCAAAAACCAAAGCCAGCTTCTCACATTCAGTCTGTATAATGATGTGAAAGGGTCATGGCTTTATTGTGCCCAGAATAAGCAGTTGTTGGTTTTGGTGGTGATTTACTTTTTGTTCCCcaaattacagaattacagcTCAAGCAGAGCTGTAAATTTTACCGCTTAAATGTGtgcatcactgtccaatgaaaataaGTATCTCCAAATTGttaactttacagaagaaacTATATTCTAAACTTTAAATGAAGGTTAATGTGATTTTCCATGTAATGTTAGTCTATTCAGTTAGAGTCATTTACACTGTGCACAGAGTTCACATGATGCTTTGCAGTGGACGCAATTATATACAACAAATCAaattttagcatatattttatatatattttttgttgagttttatCTGTTTAGTTATTGTTAATGCTTGATTTTATTTCAtgtcgtttttttgttttgtttttttaaaacattttgtttttgttcaaaCCCAATGTGCCCATGTAATAATGAATCATGAAGTAATCCATACTGTGAGATACAGTCACAGCAAAAAGCTTCAATAAGAAATGGACTGTGTATCCACCTGTATATTTATCAGTTATACTGATTAAACATGTACATAAACAAAGAGTAGAAACAC

Function

symbol description
gle1 Predicted to enable inositol hexakisphosphate binding activity; phospholipid binding activity; and translation initiation factor binding activity. Involved in Schwann cell development and regulation of cilium beat frequency involved in ciliary motility. Acts upstream of or within epithelial cilium movement involved in determination of left/right asymmetry; neurogenesis; and poly(A)+ mRNA export from nucleus. Predicted to be located in nucleus. Predicted to be part of nuclear pore cytoplasmic filaments. Predicted to be active in cytoplasm. Is expressed in several structures, including head; intestine; pectoral fin; pectoral fin bud; and trunk musculature. Used to study lethal congenital contracture syndrome 1. Human ortholog(s) of this gene implicated in lethal congenital contracture syndrome 1. Orthologous to human GLE1 (GLE1 RNA export mediator).

NR:

description
nucleoporin GLE1 isoform X3

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016973 poly(A)+ mRNA export from nucleus biological_process
GO:0005643 nuclear pore cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K18723 GLE1; nucleoporin GLE1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229134.3 True 2948 mRNA 0.46 16 35299794 35308446

Neighbor

gene id symbol gene type direction distance location
mrpl40 LOC107753002,LOC107671004,LOC107754402,LOC107559600 coding upstream 3792 35293923 ~ 35296002 (+)
polb polb coding upstream 25173 35265968 ~ 35274621 (+)
enkd1 enkd1,LOC107670972 coding upstream 34444 35259920 ~ 35265350 (+)
LOC103034472 NA coding upstream 104129 35191804 ~ 35195665 (+)
snap29 snap29,LOC107722859,LOC107560055,LOC107726963 coding upstream 210609 35083719 ~ 35089185 (+)
LOC103031612 NA coding downstream 179 35308625 ~ 35311487 (+)
naif1 naif1 coding downstream 28826 35337272 ~ 35340070 (+)
LOC103038477 fam102aa,LOC108430372,LOC107752986,LOC107671017,LOC107699668,LOC105891604,LOC107754406 coding downstream 33033 35341479 ~ 35365205 (+)
LOC103030661 LOC108430371 coding downstream 63465 35371911 ~ 35390172 (+)
LOC103030350 NA coding downstream 97008 35405454 ~ 35437427 (+)
G56482 NA non-coding upstream 12322 35285451 ~ 35287472 (+)
G56479 NA non-coding upstream 45792 35253318 ~ 35254002 (+)
LOC111192732 NA non-coding upstream 81012 35217891 ~ 35218782 (+)
G56465 NA non-coding upstream 100526 35197445 ~ 35199268 (+)
G56459 NA non-coding upstream 122815 35171898 ~ 35176979 (+)
G56487 seta,LOC103031932,LOC107752982,LOC107699670,LOC108265615,LOC107754404,LOC107671021 non-coding downstream 3669 35312115 ~ 35315555 (+)
G56492 zdhhc12,LOC107560045,LOC106955948 non-coding downstream 11433 35319879 ~ 35320773 (+)
G56499 NA non-coding downstream 83856 35392302 ~ 35468036 (+)
G56649 NA non-coding downstream 221458 35529904 ~ 35530234 (+)
G56655 NA non-coding downstream 235251 35543697 ~ 35543990 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other upstream 15523 35276079 ~ 35284271 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other upstream 27266 35226485 ~ 35272528 (+)
LOC103047498 NA other upstream 310509 34961800 ~ 34989285 (+)
G56414 tcf7l1,LOC107721095,LOC107556226 other upstream 548231 34713218 ~ 34751563 (+)
fgf17 fgf17,LOC103025711,LOC107698084,LOC107678395,LOC107721084 other upstream 788110 34503114 ~ 34511684 (+)
G56504 NA other downstream 112272 35420718 ~ 35458877 (+)
G56701 pola2,LOC107710902,LOC107657899 other downstream 647658 35956104 ~ 35964510 (+)
G57066 NA other downstream 1696827 37005273 ~ 37005798 (+)
agtpbp1 agtpbp1 other downstream 3800798 39109244 ~ 39153476 (+)
frmd3 frmd3,LOC107678471 other downstream 3983625 39292071 ~ 39370585 (+)

Expression


Co-expression Network