LOC103043728


Basic Information

Item Value
gene id LOC103043728
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 31743872 ~ 31759081 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229333.3
CTTTCTCTGGACCAATTTTATATGTCTTCTTGAACGTCAACGCTTCTCCAAAACCGAGATGTTCACGTGTGTAGTTGTTTGAAAGCTGGATCACGGTATGGGTTCTTGGGTGGTAGATGGCTGTGGAATTACAGAGGTTGTTAGCATTGTGGTCTTTAAGCTGAAGTGATGAAATGCCCTCCCCTGTGCCTGACTGCACCGAGGCTCTAATCAGAGACGATGTACTGAAAGACATACTGAGAGCATCAAAGTATGAACCAAAATGTAAAGCTGGAGATGATGTCATTGCCAAACCACAATTTACTCCAGATTCTTCTGTTGCAAGCTGGAATTGTTCTGAAATCATTTTTGATTAAGATAAGTGTCACTGCCTATTGACCCTTACTGATTTCCACTGGACTTCAGAGGAAACTTTAGATACAGTGATTCGGAGCTTCAATGGCGTGGTCCTACACTTTAACGGTTGGACAAGAGCTCTACATCTTAAACCAAGGAAAGGCTTCACCCAGCAAAACACGAAGAAAGTACGACTTTAGGCTGCTGTCTCCTAACACTGGAACCAATGGAAACACCATACATCTTCACGGGAGGGTCATTGCAGGTTCAGGAAAACACCCATTATTCACAGAACCCAATCGTCTAATTGCATGTGGAAAGCAGTGTGTTCTGTCCCCAAGACCCTACCGCTGCACCTCCATGCTCAATAAAGCTGAAAGTGAAAGGTCCATGAATGCAGAGGAGATTGAGAGGGAACCAATCTCCACACACAGAAGCTTGGATGACCAGAGATTCTGCAGTGGGAGGTTAGAGACGTTAGAGGTGAAAAAGAGGGTGCACAGCTGCCTGGGGAGACGAACAGCGAGGCTGATATCCATCCGCCGACCGTCTACAGCACCTGCATGCACTCTGCAGACTAGGGAGAGTGAAGTAATCCAGCAAAGGCCAGAAACTCCAAGTTGCAGGGTGGTgtggagagcgagagagggtgAACACGGACACCCCGACAGCCCAGATTCCACCTCAAGGGAAATTCCTGTTCTACACCTCTACCTACCCTCCTATCAGCTGCCCAAAATGGAACAGGAAATCACACAGGACAAGGATTTGAGATCAGAAATCAACATGGGATTAGATACTGAAACAGACAAACAGCTAAACAATATGAGTGATACGATTCAAAATGactttaaagaaagaaaagaagaagaagaaaacatgATCCAAGGAAGGAGTGAGAGTAAAGAAGGCATTGAAACTGGGAACAGTACCAAAAATGCAGGTAGCAACAgtgaacaaaacaaagaaactgaaaTCACAGAGGAAAAAGAAGGAAGCGGCATACTCTTTGAAGACAATGGACGGCCTAATTCTACAGACGACAGCCTGCTGCAGGACGTTACACAAGGTGAAGAAAAGCACAATAAGAAAGATGAACTCACGGAGGACAAAAGACAGCAGGAGGTCACCCAGGGTGATATAATTAAGGGTGAGGAGAACAAACAACATGATATTGGAGAGGATATCAGACATAATGACTATACTGAGGACGTTAAGCAGCTTGATATCACTAAGGAACATGACCAGGAACATAGCACCACAGGAGAAAATAGACTGCAGGGATGCAGTGAAAACAATGGGTCAGATAAAGTTGCAGATGACATTGAAGGGATCAACAAGATGGCGCCAGACTTGGAGATCCTGCAGAGCACTTCTGACCATAAGGATCTAATAAAGACTCAAACGTCTATGGAGAACCTAAATGACCTAAAGGAGCATCAACAGGTACTGGAGAAGCGAGAAAAAGCTCCACCTTCAAAGCTAAAATCTGGACGTGCTTCATGCTCGCTGGGCCAAAGCTCTGAAACCAACAGCCTGAGGAGGATTACTCACCCAGCGCCAGTTATATCGTTCCCTTgcctatatacacacacatactcctcCCCCCTACCCCATACGCTTCCATCATTTTATGGGACCCATTTTGGCTATCGTCTCAGAACGCTCCATACCCCCCAGCCCCATCGTGCCAAGACATGGACCACCAGCATCAGCTCGGACAAAAGACTCATAAAAACAGTGAAGGAACTGCCCCAGAGCAAAGAAACAAAGGGAAACCATCATGTCTCCACAATGGAAACCAGAGGAACAACAGGTCCCCACCCCAAAATAATGAGCTCAGAGTGGGGGGCTCCGCCTTGTAAAACCAAAACCACCAAGACCTTTGTGTGGGGCCCATGGGGTCCCCAAGAGaccaagagtgtgtgtgagctgcaCACTCAAGCTAACAGGTGTGATGGAGGGGCAGTTTGAAAGCTGTAGAGACTTCTTTGGCTGTGTGGGGGCTGCGTTCCTGCCCACTGCACACAAATGAGGAAGATTATGATTGAACGTTCAGAGACAGGTGTGCCTGACTAGAAGTAAATGATGTCCAAAGAGTTTCAGGCAGAAAAGCTTGGCTAAAAATATGGGCAAGGCAACATCTGCAGATGCTCTCTTTCTACGAAAAGGAAGATTTCTCAGACTCCTGTcgtaaaagtaaagaaaactagGGTTTCTCATTACAAAGAAATTACAGAGAAGGCTAAATATCTCTTGTTGCATGTTTCTTTCTAATTAAAATCATGTTTGTAATTACAAATATTGCctgcattaaatatactttaacttttaaaagtatgtttttggAAATATAAGCTTAAATTTCTTAGTATTTATAGATAGATGGTATTtatagaaagatagatatatgtacatatacagaTAGATGGTTTGGGATAGCGCCCATTCCTGACCTATAAGTGAATGCTAGGCCAACCAACCCCACTGCCCCTtttgacagacagacaaaggGATTGAAAGAGTaatagatagatggacagacaggtaggcaaacagacagacagtgagacaATGGACAGATAGATACATAGGCATAAACAAacatggatagatggatggacagacagacaattggacagacagacagagagacagtggaTAGATTTTTACATAGACATTAACAAATGtctaaaaaaagatggacagaCGGACGGactgacagagaaacaggtggCCAGACGGTCAGACAGACATGcaaacagatacagagagagagaaagagataatggACATATAGATGTGATAGACATGAACAAACAGGtgaatagatgaatggatggacagacaaaGTGACAGATAGACAGGTGGCCAGACGACAGATAGACaaagacagtcagacagatagATGAATGGACAAATGAATGGATAGTTTTCCTGATCCATGCTGTGGGAATGCTGTGCCAATCAGCCTCACTGCCCTTTTTGTTCTCTCAACCTGAGCAGATCAGGGTTAAAAGTAACACTGGGTTCCCAGAGACTCCCACTGCTGTTTCAagctttaaatgaaataaactcaTAGGTTCTCACAcagatttagtttagtttttcctgTCTGGCCTCCAAGAACCGACCAGGTATTGCATAGGTTACGTCACTTAACCACAAAGTGCGGAGAGAGAAAAGTTGGCAGCTCTGAGTGTGAGATATCAGATCTGTTTGATTGGTGAAAGCAGGTGCTTTCTCATACTCTGCTATTTATAGAAAGCACAGCTTGAAGCTGAATGTAATATCAATTGTATAAGTGCTTTGTTAAATCTGTTATTACACACTGCAGTCACTGAGGTTTTATAGAAATTTAATAGCATTTTTTACACAGTGATGGAATAAAAGCAAAATTCTGAACACTTCA
>XM_022670497.1
AGGGAAGATGATCAAATTCATCAACAAAGGCACGACTAACTCGCGTTTTAAACGGACTCAAATGGAGACTCCTGAACTTGGCTCACCTCTACAAGGTCTTGGCAGCAGCTGGAATTGTTCTGAAATCATTTTTGATTAAGATAAGTGTCACTGCCTATTGACCCTTACTGATTTCCACTGGACTTCAGAGGAAACTTTAGATACAGTGATTCGGAGCTTCAATGGCGTGGTCCTACACTTTAACGGTTGGACAAGAGCTCTACATCTTAAACCAAGGAAAGGCTTCACCCAGCAAAACACGAAGAAAGTACGACTTTAGGCTGCTGTCTCCTAACACTGGAACCAATGGAAACACCATACATCTTCACGGGAGGGTCATTGCAGGTTCAGGAAAACACCCATTATTCACAGAACCCAATCGTCTAATTGCATGTGGAAAGCAGTGTGTTCTGTCCCCAAGACCCTACCGCTGCACCTCCATGCTCAATAAAGCTGAAAGTGAAAGGTCCATGAATGCAGAGGAGATTGAGAGGGAACCAATCTCCACACACAGAAGCTTGGATGACCAGAGATTCTGCAGTGGGAGGTTAGAGACGTTAGAGGTGAAAAAGAGGGTGCACAGCTGCCTGGGGAGACGAACAGCGAGGCTGATATCCATCCGCCGACCGTCTACAGCACCTGCATGCACTCTGCAGACTAGGGAGAGTGAAGTAATCCAGCAAAGGCCAGAAACTCCAAGTTGCAGGGTGGTgtggagagcgagagagggtgAACACGGACACCCCGACAGCCCAGATTCCACCTCAAGGGAAATTCCTGTTCTACACCTCTACCTACCCTCCTATCAGCTGCCCAAAATGGAACAGGAAATCACACAGGACAAGGATTTGAGATCAGAAATCAACATGGGATTAGATACTGAAACAGACAAACAGCTAAACAATATGAGTGATACGATTCAAAATGactttaaagaaagaaaagaagaagaagaaaacatgATCCAAGGAAGGAGTGAGAGTAAAGAAGGCATTGAAACTGGGAACAGTACCAAAAATGCAGGTAGCAACAgtgaacaaaacaaagaaactgaaaTCACAGAGGAAAAAGAAGGAAGCGGCATACTCTTTGAAGACAATGGACGGCCTAATTCTACAGACGACAGCCTGCTGCAGGACGTTACACAAGGTGAAGAAAAGCACAATAAGAAAGATGAACTCACGGAGGACAAAAGACAGCAGGAGGTCACCCAGGGTGATATAATTAAGGGTGAGGAGAACAAACAACATGATATTGGAGAGGATATCAGACATAATGACTATACTGAGGACGTTAAGCAGCTTGATATCACTAAGGAACATGACCAGGAACATAGCACCACAGGAGAAAATAGACTGCAGGGATGCAGTGAAAACAATGGGTCAGATAAAGTTGCAGATGACATTGAAGGGATCAACAAGATGGCGCCAGACTTGGAGATCCTGCAGAGCACTTCTGACCATAAGGATCTAATAAAGACTCAAACGTCTATGGAGAACCTAAATGACCTAAAGGAGCATCAACAGGTACTGGAGAAGCGAGAAAAAGCTCCACCTTCAAAGCTAAAATCTGGACGTGCTTCATGCTCGCTGGGCCAAAGCTCTGAAACCAACAGCCTGAGGAGGATTACTCACCCAGCGCCAGTTATATCGTTCCCTTgcctatatacacacacatactcctcCCCCCTACCCCATACGCTTCCATCATTTTATGGGACCCATTTTGGCTATCGTCTCAGAACGCTCCATACCCCCCAGCCCCATCGTGCCAAGACATGGACCACCAGCATCAGCTCGGACAAAAGACTCATAAAAACAGTGAAGGAACTGCCCCAGAGCAAAGAAACAAAGGGAAACCATCATGTCTCCACAATGGAAACCAGAGGAACAACAGGTCCCCACCCCAAAATAATGAGCTCAGAGTGGGGGGCTCCGCCTTGTAAAACCAAAACCACCAAGACCTTTGTGTGGGGCCCATGGGGTCCCCAAGAGaccaagagtgtgtgtgagctgcaCACTCAAGCTAACAGGTGTGATGGAGGGGCAGTTTGAAAGCTGTAGAGACTTCTTTGGCTGTGTGGGGGCTGCGTTCCTGCCCACTGCACACAAATGAGGAAGATTATGATTGAACGTTCAGAGACAGGTGTGCCTGACTAGAAGTAAATGATGTCCAAAGAGTTTCAGGCAGAAAAGCTTGGCTAAAAATATGGGCAAGGCAACATCTGCAGATGCTCTCTTTCTACGAAAAGGAAGATTTCTCAGACTCCTGTcgtaaaagtaaagaaaactagGGTTTCTCATTACAAAGAAATTACAGAGAAGGCTAAATATCTCTTGTTGCATGTTTCTTTCTAATTAAAATCATGTTTGTAATTACAAATATTGCctgcattaaatatactttaacttttaaaagtatgtttttggAAATATAAGCTTAAATTTCTTAGTATTTATAGATAGATGGTATTtatagaaagatagatatatgtacatatacagaTAGATGGTTTGGGATAGCGCCCATTCCTGACCTATAAGTGAATGCTAGGCCAACCAACCCCACTGCCCCTtttgacagacagacaaaggGATTGAAAGAGTaatagatagatggacagacaggtaggcaaacagacagacagtgagacaATGGACAGATAGATACATAGGCATAAACAAacatggatagatggatggacagacagacaattggacagacagacagagagacagtggaTAGATTTTTACATAGACATTAACAAATGtctaaaaaaagatggacagaCGGACGGactgacagagaaacaggtggCCAGACGGTCAGACAGACATGcaaacagatacagagagagagaaagagataatggACATATAGATGTGATAGACATGAACAAACAGGtgaatagatgaatggatggacagacaaaGTGACAGATAGACAGGTGGCCAGACGACAGATAGACaaagacagtcagacagatagATGAATGGACAAATGAATGGATAGTTTTCCTGATCCATGCTGTGGGAATGCTGTGCCAATCAGCCTCACTGCCCTTTTTGTTCTCTCAACCTGAGCAGATCAGGGTTAAAAGTAACACTGGGTTCCCAGAGACTCCCACTGCTGTTTCAagctttaaatgaaataaactcaTAGGTTCTCACAcagatttagtttagtttttcctgTCTGGCCTCCAAGAACCGACCAGGTATTGCATAGGTTACGTCACTTAACCACAAAGTGCGGAGAGAGAAAAGTTGGCAGCTCTGAGTGTGAGATATCAGATCTGTTTGATTGGTGAAAGCAGGTGCTTTCTCATACTCTGCTATTTATAGAAAGCACAGCTTGAAGCTGAATGTAATATCAATTGTATAAGTGCTTTGTTAAATCTGTTATTACACACTGCAGTCACTGAGGTTTTATAGAAATTTAATAGCATTTTTTACACAGTGATGGAATAAAAGCAAAATTCTGAACACTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229333.3 True 3748 mRNA 0.44 5 31743872 31758967
XM_022670497.1 False 3531 mRNA 0.44 5 31743872 31759081

Neighbor

gene id symbol gene type direction distance location
LOC103041868 NA coding downstream 132918 31598462 ~ 31610954 (-)
LOC111192668 NA coding downstream 164084 31577353 ~ 31579788 (-)
tmem132c si:dkeyp-14d3.1,LOC107676622,LOC107728438,LOC107659267,LOC107550917,LOC108442515 coding downstream 311221 30967612 ~ 31432651 (-)
glt1d1 NA coding downstream 900572 30762503 ~ 30843300 (-)
LOC103041976 cgnl1 coding downstream 1193943 30528755 ~ 30549929 (-)
LOC103045458 olfml2a,olm2a,LOC105894692,LOC104951789 coding upstream 34006 31793087 ~ 31825503 (-)
LOC103027824 NA coding upstream 84993 31844074 ~ 31849517 (-)
tti2 NA coding upstream 114535 31873616 ~ 31879260 (-)
slc18a1 slc18a1,LOC107702874,LOC107722997,LOC107591929,LOC106587027 coding upstream 125269 31884350 ~ 31898822 (-)
LOC103047383 ppiaa,LOC108411171,LOC107691558,LOC107756846,LOC108265559 coding upstream 152958 31912039 ~ 31916431 (-)
G55788 NA non-coding downstream 13628 31728783 ~ 31730244 (-)
G55779 golga1,LOC107703180 non-coding downstream 30936 31710305 ~ 31712936 (-)
G55757 NA non-coding downstream 162803 31575369 ~ 31581069 (-)
LOC111192666 NA non-coding downstream 263406 31477576 ~ 31480466 (-)
LOC111192663 NA non-coding downstream 268235 31474911 ~ 31475637 (-)
G55858 NA non-coding upstream 60851 31819932 ~ 31863678 (-)
G55874 NA non-coding upstream 108318 31867399 ~ 31869197 (-)
G55884 LOC108411167 non-coding upstream 149935 31909016 ~ 31910332 (-)
LOC111192671 NA non-coding upstream 360524 32119605 ~ 32122006 (-)
G55939 LOC108440819,LOC108265606 non-coding upstream 462063 32221144 ~ 32239724 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other downstream 3651 31731464 ~ 31740221 (-)
LOC103027498 LOC108411246,LOC106585447 other downstream 53064 31635481 ~ 31690808 (-)
LOC103046862 LOC108410878 other downstream 1809442 29896515 ~ 29934430 (-)
kiaa1671 NA other downstream 1903119 29744028 ~ 29840753 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other downstream 3143362 28554727 ~ 28600510 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other upstream 1012946 32772027 ~ 32802160 (-)
LOC103023237 NA other upstream 1389993 33149074 ~ 33177650 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other upstream 3331649 35090730 ~ 35108420 (-)
acaa2 acaa2,LOC107671002 other upstream 3526341 35285422 ~ 35293421 (-)
c6h22orf39 NA other upstream 3537260 35296341 ~ 35299750 (-)

Expression


Co-expression Network