rnf10 (rnf10)


Basic Information

Item Value
gene id rnf10
gene name rnf10
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 31831354 ~ 31843104 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229334.3
CTGCGGGTGTTTACGGTTCCTGTTTGGCGACCCGTCGCCAGAAGCGAGGCCTCGTTTTGTACCATCTGAATATTGggctaaatatttaatttctccGTTTTCCGATATCGGAAAGCGGTGAACGCCTTGTGGGGCGCTGTAGTTTCCACTACAGGGGAGGATAACGCAGGTTTACGGGGTGAAGGCCCCGCTCTTTGAGCGCCAGTCCTTTCTTAATTACTGAATCTTCTTTACTGAGACATCTGGATTgtgtctctgtttttcttttctcgGAGTTTGTTGTCAAGATGTCGCCGTAATGGAGTATCCGCGTCTGACAGAAATGAACCAGGGCCTTGGTCGCCTGACCAGCATTTGCATCGACCCGTTTTCCTTGTGTTTCGCCCCGTTTAATGCTAGAGAGCTCGGCAGCTCTCTCAGCGGAGCCCGGCCTCAGCGCTTCACCCAGCCAAAGCTATTCAAACATGGAGAAAAACCCGAACGCAGCCCGGTCCAGTTCAACAGGCCCAACTTCTGCAGAGTCTAAAACTAAAACAGATACCAAGAATAATGGGGGCTCTAAGCGGTACAACCGTAAGCGTGAGCCCTCCTTCCCAAAGGCAGAAAGTTTTTCAGGCCCTCGCCGCACCCACCCACAGAAAGGCAAGAGTTTCGACAAGAGACCCCCCCAGAGAGGCGGTGGAGGTGGCAGACAGGGTGGGCTCATGGGCGgtgggagaagagaagagGTAGCAGAAACACACCGGGCCGAGTATAGCCCGGCTCAGTTTTCTGGACCCAAAAAGATCAGTCTCAACCACCTGCTCAATTTTACTTTTGAGCCACGTGGAGGCCATTTCGGCTCTGTAGGCGATGGTCATTCCTGCTGGGGACGCCGCAACAAATGGGGCCATAAGCACAAGCCCTTCAACAAGGAGCTTTTTCTGCAGGCCAACTGCCAGTTTGTGGTGATTGATGACCAGGACTACCAAGCTCACTTCACTGACCCAGATACTCTGGTCAGCTGGGACTCTGTCCAGCAAGTGCGTATCTACAGCCATGAGGTGCCGACGTGCCCGATCTGTCTGTATCCTCCTGTGGCAGCGCACATCACCCGCTGTGGCCACATTTACTGCTGGCCCTGCATGCTGCACTACCTGTCTCTCAGTGAGAAGAGCTGGTCCAAGTGCCCGATCTGCTATGAGGCTGTACACAGTGCTGACCTCAAGAGTGTTGTTGCTATGGAGACCCATCAGTATGTGCCTGGTGATGTCATCACTATGCGACTGATGCGTCGGGAGAAAGGTGTGCTGGTGGCTCTTCCAAGCTCCCAGTGGGTCAAAGTAGAGGAGCCTATCCGTATTGGAGATGTGCGTCTAAGTGCTTACTCTAAGCTGTTGTTGGCATCTCGGGAGCAAGTTCTGAGTTTGCTGACCGAGGAAAGAGGAGCACTACAGATGCAGCTTAGCCAGGAGAAGGATGACCCGCAGGCCTGCTTCATACAGAGTGCCCTGCTGCAGTTGCAGGAGCGAGAAGATGCACTGCTGCAGCGGAACAGTCAGAATGGAGGCAATGTTGAGGGTGCAGACATGAGTAAACTTTCCCTAACCGACTGTGTTGCTCCTGAGGTGGCTGTTAACACCTACGCCAGCTCCAAGCCCATTCTGCAGTATGCGTCTGCTTTTGACGATGAGGTTCAGGATGTCCCTGAGGACCTGCCTGAGGACCTGCCTGAGCCTGAGGAGGTGACTGAGCCAGACTCTGTGCTTGAAGAACCTGAAGAAAATCCTGGTCAGAGTGTGGCTGCATCCCTTCCAAATTCACAGCATGGCCCATTCTACTACTTCTACCAAGCGGAAGATGGGCAGCAGATGTTCCTGCACCCTGTTAATGTGCGCTGTCTGCTGAGGGAGTACGGCAGTCTGGAGAACAGCCCTCAGTCAATCACTGCTTCTGTAGTGGAGATTGAGGGGCATACAGTCAACGAGGATGTTCGTCGTCGGCACCGTTACCTGTCTCATCTGCCCCTGACCTGTGAGTTCAGCATCTGTGAGCTTAACCTGCAACCACCCATCCTCTCCAAAGAGACACTGGACAGCTTTTCAGATGATATAGAGAAAAGAAAGCGCCTGAGACAGAAGAAAGTAAGGGATGAGAAGAGGAGGGAGAGAAGGATTGAgatggaggagaacaggaaGCAGGGGAAATATCCAGAGGTACACATTGGACTGGAGAACCTTCAGCAGTTCCCTGCATTTGGCTCTCCTCCTCAAGACAGCCCTCCAATTCCACCACCTGAGCTTCTGTTTGGACCTCCATCTCCTCTCAGCAGCAGCCCTACCTCtgATGGAGTGATGTTTCCCAGTCTGCATGGGAACAGTCCCTGCCTCAGTGTGGGTAGTGTAGAGGAAGATTCTCACTGCATGTCCTTTGCCCAGATGCTGAGAGATGGAAAGGCTCGTGTGGATGCTGGGCCCAAACAAGCCCCAAAGAAAGATGTGTTCCTGGCTCCTCCGGTGGCTGACAGTGATGGGGAGAGTGATGGCTCTGACCGGGTGCCGGTGCCTAACTTTCAGAACTCCTTTAGTCAGGCATTCGAGGCGGCACTTCTGCAGCTGGACCACAAGCCACCTGCCCCAGCTGAGGCTCTAACCACCTCTGAGGAGAAaggagggaagaaaaagaagaaaaagcaaAAGCTTCTGTTTAGCACCTCTATGGTTCATACAAAGTAAACAAGATTACACTTTTTCTCCTCTCCATACCTCATACTTTTCCTTTCAGCTTTCCTTAGTCATTATTTTGCCTTTTCTCCTCATCCCTGTCCCTCTGTCCTTGATTTGTTCTCTACTGTGTTAGTTTAGCCATGAGTAGGCCCTGAATGGAGGTTCAGTGACTAGCCAAAGTTGTGGTTGAGCTGAGTGATCTAACAACTGCAGTGTGATACATGCTATAGACCCAGTATTACTAATATAGCTTAGTTGTCGCTGTGGGCTATTTTAAGAGATCACTctgatattttttgtaaattcaCCACGCTGCttaatacacatttttaaatgttaacttGCAGCTTCACTTTTGTTGCATTCATTGATTATTGTAGCACTGCCCCAAGCTAACTTGAGTAGATTTAACCTCCGATTGTGGCCATCATTATGCAACTGTTAAACATGTCTACGGTGTTGAGGGCAATACTGGATGTGGGGTACAGAGGGGCATAAAATGAAGCAGTCAGCCAGCTGCACAAATATTGATACCCTCTTTACCAATATATCTAAACCCCTTTCCGAGCACCAGCACCAGTATTCTGTTTCAGACCAGATGCAAGACAAATTTAAAAAGAGGCACATAGTTAGTCTGCTTTCTTTAATTTGCAACGTGAGCATGTCTATTAGACTGGAGCTTCTTTTCCCTTTGTTCCCCTTGTTTTCCTCCTCCTTTCTCCTTCCCTTCAAAATATGACTCACTGGTTTATTATGGCACTTTATATTCTCCACATATGCATCAGCTATAATCAGCAGAATGCAGTTTTATATTGCAGTAGATGTGCATATGATCTGACATTCTGAGACACATTTCACTTTCAGTCATTGCCTACCCAGAGCTGGTAAACAGTGATTGTGATGATTGAATGCCTGGTTGCTCAAGCTGACCAGGTTTAGATCCGGCACCCATCCACAGTGTTGCTAAAGTTTGAAGCTTCAGGGAGGTGCAGCCTCCCATATTTTCTATGAACCGAGTAAAGAAATGGCATGAAAAGATCTGGTTAAATGTTTATGAATTTTCTGGATTGTTTAGAGGgtggttctttttcttttcttattttttctttttcttttggatCTGCTTAGAGGGAACCTGTGTTAAACATGCATATTGACTCAGAATGAATAAAGGATTATTATGCACTGTC

Function

symbol description
rnf10 Predicted to enable transcription cis-regulatory region binding activity. Predicted to be involved in positive regulation of myelination and positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm. Orthologous to human RNF10 (ring finger protein 10).

NR:

description
RING finger protein 10

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229334.3 True 3895 mRNA 0.49 17 31831354 31843104

Neighbor

gene id symbol gene type direction distance location
pop5 pop5 coding upstream 734 31827417 ~ 31830620 (+)
golga1 golga1 coding upstream 103334 31695618 ~ 31728020 (+)
slc15a4 slc15a4,LOC107659270 coding upstream 891643 30847907 ~ 30939711 (+)
LOC103026612 LOC108442518 coding upstream 1081438 30659726 ~ 30749916 (+)
LOC103026908 NA coding upstream 1205972 30614316 ~ 30625382 (+)
mak16 mak16 coding downstream 14322 31857426 ~ 31863709 (+)
LOC103046271 NA coding downstream 24050 31867154 ~ 31869244 (+)
LOC103029092 NA coding downstream 62113 31905217 ~ 31909811 (+)
nudt18 NA coding downstream 177242 32020346 ~ 32024618 (+)
LOC103022464 rassf2a,LOC108440819,LOC108265606,LOC106580442,LOC107687959 coding downstream 378073 32221177 ~ 32242559 (+)
G55770 NA non-coding upstream 101106 31728742 ~ 31730248 (+)
G55771 NA non-coding upstream 107305 31722624 ~ 31724049 (+)
G55751 LOC108411246 non-coding upstream 182849 31648237 ~ 31648505 (+)
G55747 NA non-coding upstream 231783 31595829 ~ 31599571 (+)
G55741 NA non-coding upstream 250312 31575364 ~ 31581042 (+)
G55821 ppiaa,LOC107756846,LOC108411171,LOC107691558,LOC108265559 non-coding downstream 68893 31911997 ~ 31968143 (+)
G55836 NA non-coding downstream 90279 31933383 ~ 31934697 (+)
G55837 NA non-coding downstream 96273 31939377 ~ 31944389 (+)
G55846 adam9,LOC104959316 non-coding downstream 137810 31980914 ~ 31984290 (+)
G55833 NA non-coding downstream 182492 32025596 ~ 32025905 (+)
G55502 NA other upstream 1206308 30347016 ~ 30625046 (+)
G55532 cgnl1 other upstream 1281293 30528862 ~ 30550061 (+)
G55218 NA other upstream 3076537 28754030 ~ 28754817 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other upstream 3174536 28646064 ~ 28656818 (+)
ipo11 ipo11 other upstream 3892965 27814215 ~ 27938389 (+)
G55831 LOC107691557,LOC108411168 other downstream 77716 31920820 ~ 31924095 (+)
G55844 adam9,LOC107591921,LOC107702867,LOC107722987 other downstream 131577 31974681 ~ 31977419 (+)
LOC103024127 kcnip3a,LOC108440810,LOC107753121,LOC107687962,LOC107684506,LOC107566017,LOC108264878,LOC101482209,LOC107553838 other downstream 216305 32059409 ~ 32150570 (+)
slc23a2 slc23a2,LOC108440813,LOC108265605,LOC107684505,LOC107753122,LOC100702287 other downstream 339973 32183077 ~ 32217411 (+)
G56160 NA other downstream 1515110 33358214 ~ 33366012 (+)

Expression


Co-expression Network