fam160b2 (fam160b2)


Basic Information

Item Value
gene id fam160b2
gene name fam160b2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 32025660 ~ 32039348 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229347.3
TGTGCGCGCTGTGCCCGTCAGACGGCGCCGTGGAGCGGCTGGAGGCTAAAGAAGCTAAAATGCGAACTAGTTACATTTTCCAACAAGTAGCTCGCGCGCTGAGCTAAATACGGGATTACAGATGTGTATATCGTCGAATTATGGTGGTTAGAAAGCTGAAAGAGGCCGTATAATGGACGTTTTAAACAAACTGACGACTCTCTTCCAGCAGGCCCTGGAAACAAGGGAGCCGTCAATCAATCTGCTTGACTCTTTCATAGATCACTGGAAAGGAATAACCAACTACTACATAGAAACTACAGATGAATCTAGACCAGTGAAACAGACCGACATCCCATGGAGGCTGAAACAGATGCTGGATATCCTGGTGTATGAGGAGAAGCAGCAGGAAGTGGAGGAGACTGGGGCCTGCATGGAGTACCTGCTTCAACATAAAATATTAGAGACACTCTGCACACTGGGAAAGGCTCAGTATCCTCCTGGTATGAGCCAGCAGGTCTTGGTGTTCTTCTCTAAGGTCCTGGCACAAATCCAGAAGCCAGTGCTCCATCTAATTAATGTGCATCGACCGATACAGAAACTTATTCGTCTGTGTGGACTCCCCAACTCCAACACAGAAAAAGAGGAGGCacaatttatgttttttgtttgttctagAGTAAAAAAAGATCCATATGTCCTCAACTACATCTTAGAGACTGCCAAGGATGGCAATCCCCAAAGATCCAGCTCTGTCTCAGAGGACAGTACAGAGGAGAGTTTCAGCGAAGTGTCCAGTCCAGCCAGTTCACCCTCTCCATCCACTCCCTCATCACCTCCACAAAACTCGTCTCAGCCAGACATCATCGATATCCTCACACAGCTGATGAAGAGCCAGaaaaGTCGTGTTGCTCTGCGGGCAATGGAGAGTGTGATGCTTCTGACCAGTATCGCTCAGGAGGATACGGCCAAGCTGCTGGCAGAGGAAACTCCACTGTGTGCCCTTTTGTCACAGAGACTGTGTGAACTTTACTGCACCATCCCCACCACACTCCACCCTGCAGACCTGCACAGCTACCCCCTTAAAAAATGGAAGACTCCATCTGCTCCAGACTGTTCTGCTACAGAGGAGAGCCCTTCAAGCTCTGCTCAGGAACACATAGACAACTTCTTCTCCTGGCTAGACTACTGTGATGAAATCATTAAAGAAGCACCAATGGTGTTTGCTGTTACACTTGCCAAAGCTATTCACCAGCAGTGGCTTACAGGAATTGTTCAGCCTCAGCTGCTACAGATGTCAGAGGCTGGGGTCCTGGTCCACACTGCTTTGCTGTCATGCACTGTGCGTCACATACACTCATCGGCCTTGCTGCAGGAGCTGGTGCACTTTTTGCTGGGCAACGACACACACCATGAGCAGCAGACAGACacaccccctcacacacacttactacgCTTCCATCTCATCGAACACTGTGACCACATCTCAGACGagATTAGCATCACTACCTTACGGATGTTTGAGGAGCTCTTGAAGAGGCCAGACAGAAACATCCTAAACAGTCTGGTACTGAGGAACCTGGAGGGCCGCAGCTACAGGCTTCCAGGATCAGGGGAGGACAGACCTGGTGCAGAGTGTGATGCCTTGGAAGAGTCTGATGAGCTGGAAGAGGATCCTTTCTTCACAGACAGTGAGTTCAGTGGCTCTGAGTCTCTGCTATCTCTGTCCAGGGATGAGAGGAGGTCCAGTACTCGCACACAGATTGCAGAAACTGTTAACAGCTTTCTTTGCTTAGTACCTCAAGAAGCAAAAACAACTCAACATGTGCAAGGAGCAGGATATGACACATATGTCCACGATGCTCTTAAATCACTAAAAGAATGCACAGCTGTGTCTCTGGAGTGGGGCTGGCCAGATAATCCCAAACCTATTGATGCCCATTCCTCCAGTGTACACTTTTATGAAGGCCACTTTCTCAAAGTACTGTTTGACAGGGCATCACGCATACTAGAGCAGCCGTATGAGCTGAACCTGCAGGTGACGTCTGTGTTGTCCAGGCTGGCGGTGTTCCCTCACCCTCATCTCCATGAGTACCTGCTGGACCCCTACATCAACCTGAGCCCTGGAGCCCGCTCGCTGTTCTCAACCCTTGTTAGAgTGATAGGAGAGCTGATGCAGAggatccagcacatcccaaactTCACACAGAGACTCATCCTGGTTAGGAGACAACTGATGGGCCTGGAGGAGGAGACCTTGGTCGATCATGCAACCCTGTTAAAAGGAGTGATTGTACTAGAAGAGTTCTGTAAGGAGCTTGCAGCCATCGCTTTCGTAAAACTCCCCATGGGTGATCAGGAACACCTTGCTGCCTTCAGCCCTTAAATAAGGACAGTACTGAACTCTTATAGTCATCTCTCTAAAGGACTGAATCAGTTGAGCAGTCATCTCAGTCTGTTTGCACAGATTAAGGTGAGACTGACACTGCTAGGCAGGGTACAGTACTGCCGTGACTTTCTGAAAATACTGAGGTACGGTAAGTATAAAATTGGCCATGTTGTTGGTCACATGTTTGATGAGAGAGTTCATTTCTTCATTGACCTTGACtcctaaaaaaaagataatcatGCTATGAATAAATGAGCACCCACTAATTAGCATCATGCCAGCAGCATTTTCATGCTAATTGTGAGCTGTTAGCCACATTAGCGTGTTTGATTACCAGTAatctattcatttaaaatatcacaagGCTGCATGCTACTATAGAGCAGTAAATATTGATTGCCATCAGCCATGTGCAGCCATGAGTGTGGTGAATGGAGAATGCCAGTTTTCAGACCTGGGGTCTTCACAGAGCTGCTTATTGCCCAAGAATGTACTGGTCAATAAGCTGGTAGTCTcattaaatgaaatattttactttttgattGACTGGTTAGTCTAGAAAAATGCCTTTATGTCTTTGGCATGAGATATAATGGATGGCATGTCCTTAGTCTTAATTAAAAGCAGGGTGCTCAAATGTGAATGATAGAACTTTTTAGTAGGTACTGTTTACCTACAGCAACacataaaactaaactagattTGTAATTTTCACAAGAATCAAATGAATCAacacatttttgctttttaaatactttactgggtgaaaatggggatgtaatatatattttacttcttACGTGGAAATGATGCACAAGTACAAAACAAGTGCAATTTACTAGAATTTAATTTATTGGCGACTAAACTGTACAGTGCTGCTGTCCCTTCCTGGCCTTGAGAACTGTGAACAGGGCTCTAAAAAGGCTTGCGAGTGTCCCGATGAAAGCCTGTATTAAACCTTATAGGTCTGAATAATGCAGTTAGGGTTGTGAGCTGTTGCACatattctcctttttttttacatgctgaTTACTTATAGCACAGCAGTCATTTATTTAGGATCAGTGGGGTGGTGATGACttttaatgagtttttattgttcaaatgaaaaaaaaaaaaagaataataattggGACACTGAACCCCTTTCTAtgcttgtattattattattattattattattattattattattattattattattattattattattattattattatagagctTAACATTTGTATGCAAAAACAGAATTTTCTATTTATCTTTAAGCTATCAACTTTCATGTGTGGTAATTTATGTATGAATAATTATCAATTTCATCTTAATTTTACATTGTATAGCTGAACCAACAGATAAGGGGTGTGCAATTATTCTtactgtttgtttaaatgttggaCTATGTGGTATGTATGGTCAATTTGACTGTACTCTTTTTCCACTCTTTACCACTTTTCTCAATGAAGATGACTTTGTATGGAGAAGAGATAACA

Function

symbol description
fam160b2 Orthologous to human FHIP2B (FHF complex subunit HOOK interacting protein 2B).

NR:

description
protein FAM160B2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229347.3 True 3868 mRNA 0.43 17 32025660 32039348

Neighbor

gene id symbol gene type direction distance location
adam9 adam9,LOC107591921,LOC107722987,LOC107702867,LOC107691559,LOC107566966 coding downstream 7241 31968525 ~ 32018419 (-)
LOC103029395 ogdha,LOC108411168,LOC107756845,LOC107691557,LOC108265558,LOC107566960 coding downstream 61790 31920821 ~ 31963870 (-)
LOC103047383 ppiaa,LOC108411171,LOC107691558,LOC107756846,LOC108265559 coding downstream 109229 31912039 ~ 31916431 (-)
slc18a1 slc18a1,LOC107702874,LOC107722997,LOC107591929,LOC106587027 coding downstream 126838 31884350 ~ 31898822 (-)
tti2 NA coding downstream 146400 31873616 ~ 31879260 (-)
ccdc92 ccdc92,LOC107742742,LOC107687960 coding upstream 218427 32257775 ~ 32280329 (-)
ncor2 LOC108412761,LOC107742750 coding upstream 410805 32450153 ~ 32632080 (-)
ep400 ep400 coding upstream 696065 32735413 ~ 32770670 (-)
LOC111192669 NA coding upstream 777769 32817117 ~ 32820294 (-)
adgrd1 NA coding upstream 788820 32828168 ~ 32915531 (-)
G55884 LOC108411167 non-coding downstream 115328 31909016 ~ 31910332 (-)
G55874 NA non-coding downstream 156463 31867399 ~ 31869197 (-)
G55858 NA non-coding downstream 161982 31819932 ~ 31863678 (-)
G55788 NA non-coding downstream 295416 31728783 ~ 31730244 (-)
G55779 golga1,LOC107703180 non-coding downstream 312724 31710305 ~ 31712936 (-)
LOC111192671 NA non-coding upstream 80257 32119605 ~ 32122006 (-)
G55939 LOC108440819,LOC108265606 non-coding upstream 181796 32221144 ~ 32239724 (-)
G55938 NA non-coding upstream 202073 32241421 ~ 32242539 (-)
G55952 NA non-coding upstream 213595 32252943 ~ 32253161 (-)
G56089 LOC108412767 non-coding upstream 398195 32437543 ~ 32442453 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other downstream 285439 31731464 ~ 31740221 (-)
LOC103027498 LOC108411246,LOC106585447 other downstream 334852 31635481 ~ 31690808 (-)
LOC103046862 LOC108410878 other downstream 2091230 29896515 ~ 29934430 (-)
kiaa1671 NA other downstream 2184907 29744028 ~ 29840753 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other downstream 3425150 28554727 ~ 28600510 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other upstream 732679 32772027 ~ 32802160 (-)
LOC103023237 NA other upstream 1109726 33149074 ~ 33177650 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other upstream 3051382 35090730 ~ 35108420 (-)
acaa2 acaa2,LOC107671002 other upstream 3246074 35285422 ~ 35293421 (-)
c6h22orf39 NA other upstream 3256993 35296341 ~ 35299750 (-)

Expression


Co-expression Network