LOC103022464 (rassf2a,LOC108440819,LOC108265606,LOC106580442,LOC107687959)


Basic Information

Item Value
gene id LOC103022464
gene name rassf2a,LOC108440819,LOC108265606,LOC106580442,LOC107687959
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 32221177 ~ 32242559 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229349.3
CGCGTGGACGGAGAGCGCGAGAACAGAGCGCGCGACAGCTTCTTATCAAAACGTTTTGTAACGTCAGCGTAACGTTAGTTAACGTTAACctaaaagaaaagaaggagtaggaggaggagaagaagggagggggcggggctttggAGGGAGAAGCAGCGGCTCGAGCCCGGGAGCGTCGTGACGACGGGACGCTCGCGCTTGACAACAACGGAATCCGCGCGTGGGTTCTCACCCATGCAGTTGTGTTGGAGATAAGATGGATGACAGGCGTGAAGGAGTGCAGGTTGGAGAGAATAAGTACATCAGCAAAAGCAGCATCCTGTCACACCTGAAGACCTATAACCTCTACTATGAAGGACAGAACCTGCAACTCAGGCACAGAGAGGAAGAAGATGAGTTGATTGTGGAGGGTCTTCTCAATATCTCCTGGGGTTTGCGCCGACCAATCAGATTGCAGATGCAGGATGACCACGAGCGTATCAGACCTCCTCCCTCCTCCACATCCTGGCACTCGGGCTGCAACCTCGACAACCAAAgCCCTGAGGGTCAGAAACAAGCTCCGCCCTCCATTGAGGTGACAGAACCAGAGAGCCAATCAGATAGGAGCATGACAGGAGAGGAGAATGATGAGGAAGaTGGTGTTGACACCTCTTCTCAGCTGCTCAGGACCAAAAGTGATGCTGGTGTGTTGAGGCGGGGTAACAGGCGGTCTCCTAGCGACCAGAGACGAATCAGAAGGCACAGATTCTCCATCAATGGCCATTTCTATAACCACAAGaCAGCTGTGTTTACCCCGGCGTACGGCTCCGTGACCAACGTGAGGATAAACAGCTGCATGACGACGCCGCAGGTGCTGCGTCTGTTACTCAACAAGTTTAAGATTGAAAACAGTCCAGATGACTTCGCTCTGTATCTCGTTCACACCAGCGGAGagCGGGTTCAGCTGAAGCGAACAGATCACCCGCTGGTGTTGAGGATCCTGCAGGGTCCGTGTGAACAGGTCTGCAGAATCTTCCTCATGGAACAGGACCTGGGAGAGGAAGTTACATATGATGTGGCGCAGTACATAAAGTTTGAAATGCCTGTGCTGCAGAGTTTTATCACCAaactgaaggaggaggaggacagaGAGGTGCAGAAGCTCAAACGAAGaTATAAGTATCTGCGGTACATCATCGAGAAGCAGTTGCAATGCGCCCCGGATGGTTCCACTTGTATGTGAAGAAGCTCCTACCCCACCAGCACCCGTTCCCCTTAGCACCGACCCGTGTGCTCTTTGTTCGACTGTGAAAGGGCTGCAGACCAGACTGTGTGCACACCATGCCTGGTTCATTTGATCTATAAAAAACAGCCCATAATACTCTAGACTGCCTTTTTCTGCAGCCATAATATGAAGTCCATAGAGCAGTGGTAGCTATTGCTGGGTGAAGTGTATTTGAGTTAGTCATGGTACTGGGGCACATGACATTTGGCAGTAGCTGATTTTGCTTGATGTGCTGGAGTTTACAGAGCCCACGCAACCTGTCTGAACCTTCAGTGAGCTGATAGAACAAAAATAGTACaataatttacagtaacagAAACTAAAATACAGTGAATTTGTTTGAAGAGGTAGTTAACTTCTGACACACTGACCGCTCTCAGTACTTCTGTCTAATAGTCATATTTATATTACTGACTGGTGGTTTGTGGCACACATGCTGGCGCCCCCTAATGGCACAAGACATAAATGCACATTTGACCAATAAATAAATTCCTGAGATGTGAGAAATTCCCTCATGATAAGCACAATATAATAGAGGGTTCCTGGTCTGATCCAGTTGGGTGAGATTATGAACATTCATAAACTGATGAAAAAAAGTAGTGAGttaagaggtgtgtgtgtgtaaatgtgtgtgtgtaaggaggcATAAAGTAGGAATAAGAGTGAGACACAGCAGCCacccttatttaaaaaaatgtttaaaatgtttggaTGAACTTTGGgtgtatcatttttttatgtgtgcgattgtatgtaagtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatagccTGTGTGCCTGTACTGGGAATTTGAATGTGCCGCATGCTCATCCATGTAAGAGAGACtgaatttttaatgtttttatctttttaaatcagttgcttgtttttgtttactgGTCTCGGGTTCTGGGAGAACAGCTGATCCATCATGCCTTTAGTTTTGGTTTATAATAAAGCTGACATGAGAATGAAGATTaaaaaggagtaaaaaaaaaagaaaaa
>XM_007229350.3
AGGACGGCACTTCCCCAATCCTGCCTTCTACTGCCTCACTCCTCACACCACcaacacagattcacacacagCGGagattcacactcacacacacctcagagaAGTTCTCACCCATGCAGTTGTGTTGGAGATAAGATGGATGACAGGCGTGAAGGAGTGCAGGTTGGAGAGAATAAGTACATCAGCAAAAGCAGCATCCTGTCACACCTGAAGACCTATAACCTCTACTATGAAGGACAGAACCTGCAACTCAGGCACAGAGAGGAAGAAGATGAGTTGATTGTGGAGGGTCTTCTCAATATCTCCTGGGGTTTGCGCCGACCAATCAGATTGCAGATGCAGGATGACCACGAGCGTATCAGACCTCCTCCCTCCTCCACATCCTGGCACTCGGGCTGCAACCTCGACAACCAAAgCCCTGAGGGTCAGAAACAAGCTCCGCCCTCCATTGAGGTGACAGAACCAGAGAGCCAATCAGATAGGAGCATGACAGGAGAGGAGAATGATGAGGAAGaTGGTGTTGACACCTCTTCTCAGCTGCTCAGGACCAAAAGTGATGCTGGTGTGTTGAGGCGGGGTAACAGGCGGTCTCCTAGCGACCAGAGACGAATCAGAAGGCACAGATTCTCCATCAATGGCCATTTCTATAACCACAAGaCAGCTGTGTTTACCCCGGCGTACGGCTCCGTGACCAACGTGAGGATAAACAGCTGCATGACGACGCCGCAGGTGCTGCGTCTGTTACTCAACAAGTTTAAGATTGAAAACAGTCCAGATGACTTCGCTCTGTATCTCGTTCACACCAGCGGAGagCGGGTTCAGCTGAAGCGAACAGATCACCCGCTGGTGTTGAGGATCCTGCAGGGTCCGTGTGAACAGGTCTGCAGAATCTTCCTCATGGAACAGGACCTGGGAGAGGAAGTTACATATGATGTGGCGCAGTACATAAAGTTTGAAATGCCTGTGCTGCAGAGTTTTATCACCAaactgaaggaggaggaggacagaGAGGTGCAGAAGCTCAAACGAAGaTATAAGTATCTGCGGTACATCATCGAGAAGCAGTTGCAATGCGCCCCGGATGGTTCCACTTGTATGTGAAGAAGCTCCTACCCCACCAGCACCCGTTCCCCTTAGCACCGACCCGTGTGCTCTTTGTTCGACTGTGAAAGGGCTGCAGACCAGACTGTGTGCACACCATGCCTGGTTCATTTGATCTATAAAAAACAGCCCATAATACTCTAGACTGCCTTTTTCTGCAGCCATAATATGAAGTCCATAGAGCAGTGGTAGCTATTGCTGGGTGAAGTGTATTTGAGTTAGTCATGGTACTGGGGCACATGACATTTGGCAGTAGCTGATTTTGCTTGATGTGCTGGAGTTTACAGAGCCCACGCAACCTGTCTGAACCTTCAGTGAGCTGATAGAACAAAAATAGTACaataatttacagtaacagAAACTAAAATACAGTGAATTTGTTTGAAGAGGTAGTTAACTTCTGACACACTGACCGCTCTCAGTACTTCTGTCTAATAGTCATATTTATATTACTGACTGGTGGTTTGTGGCACACATGCTGGCGCCCCCTAATGGCACAAGACATAAATGCACATTTGACCAATAAATAAATTCCTGAGATGTGAGAAATTCCCTCATGATAAGCACAATATAATAGAGGGTTCCTGGTCTGATCCAGTTGGGTGAGATTATGAACATTCATAAACTGATGAAAAAAAGTAGTGAGttaagaggtgtgtgtgtgtaaatgtgtgtgtgtaaggaggcATAAAGTAGGAATAAGAGTGAGACACAGCAGCCacccttatttaaaaaaatgtttaaaatgtttggaTGAACTTTGGgtgtatcatttttttatgtgtgcgattgtatgtaagtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatagccTGTGTGCCTGTACTGGGAATTTGAATGTGCCGCATGCTCATCCATGTAAGAGAGACtgaatttttaatgtttttatctttttaaatcagttgcttgtttttgtttactgGTCTCGGGTTCTGGGAGAACAGCTGATCCATCATGCCTTTAGTTTTGGTTTATAATAAAGCTGACATGAGAATGAAGATTaaaaaggagtaaaaaaaaaagaaaaa
>XM_007229351.3
GCGCGTGGACGGAGAGCGCGAGAACAGAGCGCGCGACAGCTTCTTATCAAAACGTTTTGTAACGTCAGCGTAACGTTAGTTAACGTTAACctaaaagaaaagaaggagtaggaggaggagaagaagggagggggcggggctttggAGGGAGAAGCAGCGGCTCGAGCCCGGGAGCGTCGTGACGACGGGACGCTCGCGCTTGACAACAACGGAATCCGCGCGTGGGGTGAGTGGAGCTGCGTGGAGCTGCGTTAGCCGAATGTGCTAACATCTGACTCCAGTTCTCACCCATGCAGTTGTGTTGGAGATAAGATGGATGACAGGCGTGAAGGAGTGCAGGTTGGAGAGAATAAGTACATCAGCAAAAGCAGCATCCTGTCACACCTGAAGACCTATAACCTCTACTATGAAGGACAGAACCTGCAACTCAGGCACAGAGAGGAAGAAGATGAGTTGATTGTGGAGGGTCTTCTCAATATCTCCTGGGGTTTGCGCCGACCAATCAGATTGCAGATGCAGGATGACCACGAGCGTATCAGACCTCCTCCCTCCTCCACATCCTGGCACTCGGGCTGCAACCTCGACAACCAAAgCCCTGAGGGTCAGAAACAAGCTCCGCCCTCCATTGAGGTGACAGAACCAGAGAGCCAATCAGATAGGAGCATGACAGGAGAGGAGAATGATGAGGAAGaTGGTGTTGACACCTCTTCTCAGCTGCTCAGGACCAAAAGTGATGCTGGTGTGTTGAGGCGGGGTAACAGGCGGTCTCCTAGCGACCAGAGACGAATCAGAAGGCACAGATTCTCCATCAATGGCCATTTCTATAACCACAAGaCAGCTGTGTTTACCCCGGCGTACGGCTCCGTGACCAACGTGAGGATAAACAGCTGCATGACGACGCCGCAGGTGCTGCGTCTGTTACTCAACAAGTTTAAGATTGAAAACAGTCCAGATGACTTCGCTCTGTATCTCGTTCACACCAGCGGAGagCGGGTTCAGCTGAAGCGAACAGATCACCCGCTGGTGTTGAGGATCCTGCAGGGTCCGTGTGAACAGGTCTGCAGAATCTTCCTCATGGAACAGGACCTGGGAGAGGAAGTTACATATGATGTGGCGCAGTACATAAAGTTTGAAATGCCTGTGCTGCAGAGTTTTATCACCAaactgaaggaggaggaggacagaGAGGTGCAGAAGCTCAAACGAAGaTATAAGTATCTGCGGTACATCATCGAGAAGCAGTTGCAATGCGCCCCGGATGGTTCCACTTGTATGTGAAGAAGCTCCTACCCCACCAGCACCCGTTCCCCTTAGCACCGACCCGTGTGCTCTTTGTTCGACTGTGAAAGGGCTGCAGACCAGACTGTGTGCACACCATGCCTGGTTCATTTGATCTATAAAAAACAGCCCATAATACTCTAGACTGCCTTTTTCTGCAGCCATAATATGAAGTCCATAGAGCAGTGGTAGCTATTGCTGGGTGAAGTGTATTTGAGTTAGTCATGGTACTGGGGCACATGACATTTGGCAGTAGCTGATTTTGCTTGATGTGCTGGAGTTTACAGAGCCCACGCAACCTGTCTGAACCTTCAGTGAGCTGATAGAACAAAAATAGTACaataatttacagtaacagAAACTAAAATACAGTGAATTTGTTTGAAGAGGTAGTTAACTTCTGACACACTGACCGCTCTCAGTACTTCTGTCTAATAGTCATATTTATATTACTGACTGGTGGTTTGTGGCACACATGCTGGCGCCCCCTAATGGCACAAGACATAAATGCACATTTGACCAATAAATAAATTCCTGAGATGTGAGAAATTCCCTCATGATAAGCACAATATAATAGAGGGTTCCTGGTCTGATCCAGTTGGGTGAGATTATGAACATTCATAAACTGATGAAAAAAAGTAGTGAGttaagaggtgtgtgtgtgtaaatgtgtgtgtgtaaggaggcATAAAGTAGGAATAAGAGTGAGACACAGCAGCCacccttatttaaaaaaatgtttaaaatgtttggaTGAACTTTGGgtgtatcatttttttatgtgtgcgattgtatgtaagtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatagccTGTGTGCCTGTACTGGGAATTTGAATGTGCCGCATGCTCATCCATGTAAGAGAGACtgaatttttaatgtttttatctttttaaatcagttgcttgtttttgtttactgGTCTCGGGTTCTGGGAGAACAGCTGATCCATCATGCCTTTAGTTTTGGTTTATAATAAAGCTGACATGAGAATGAAGATTaaaaaggagtaaaaaaaaaagaaaaa

Function

symbol description
rassf2a Predicted to be involved in positive regulation of protein kinase activity; regulation of intracellular signal transduction; and signal transduction. Predicted to act upstream of or within regulation of apoptotic process. Predicted to be active in cytoplasm and nucleus. Is expressed in nervous system. Orthologous to human RASSF2 (Ras association domain family member 2).

NR:

description
PREDICTED: ras association domain-containing protein 2-like

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG:

id description
K09851 RASSF2_4; Ras association domain-containing protein 2/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229349.3 False 2300 mRNA 0.47 10 32221178 32242559
XM_007229350.3 False 2179 mRNA 0.46 10 32229760 32242559
XM_007229351.3 True 2356 mRNA 0.47 10 32221177 32242559

Neighbor

gene id symbol gene type direction distance location
nudt18 NA coding upstream 196559 32020346 ~ 32024618 (+)
LOC103029092 NA coding upstream 311366 31905217 ~ 31909811 (+)
LOC103046271 NA coding upstream 351933 31867154 ~ 31869244 (+)
mak16 mak16 coding upstream 357468 31857426 ~ 31863709 (+)
rnf10 rnf10 coding upstream 378073 31831354 ~ 31843104 (+)
LOC103025291 NA coding downstream 2001 32244560 ~ 32251009 (+)
rflna fam101a,LOC107687957,LOC107553832,LOC108412767 coding downstream 175120 32417679 ~ 32440011 (+)
LOC111192715 NA coding downstream 470990 32713549 ~ 32729908 (+)
LOC103026160 NA coding downstream 1086227 33328786 ~ 33360143 (+)
LOC103024594 NA coding downstream 1133460 33376019 ~ 33378613 (+)
G55833 NA non-coding upstream 195272 32025596 ~ 32025905 (+)
G55846 adam9,LOC104959316 non-coding upstream 236887 31980914 ~ 31984290 (+)
G55821 ppiaa,LOC107756846,LOC108411171,LOC107691558,LOC108265559 non-coding upstream 253034 31911997 ~ 31968143 (+)
G55837 NA non-coding upstream 276788 31939377 ~ 31944389 (+)
G55836 NA non-coding upstream 286480 31933383 ~ 31934697 (+)
G55955 NA non-coding downstream 61742 32304301 ~ 32304773 (+)
G55977 NA non-coding downstream 202174 32444733 ~ 32446803 (+)
G55978 NA non-coding downstream 205113 32447672 ~ 32448789 (+)
G55979 ncor2,LOC108412761 non-coding downstream 206939 32449498 ~ 32470210 (+)
G55988 ncor2 non-coding downstream 221029 32463588 ~ 32466440 (+)
slc23a2 slc23a2,LOC108440813,LOC108265605,LOC107684505,LOC107753122,LOC100702287 other upstream 3766 32183077 ~ 32217411 (+)
LOC103024127 kcnip3a,LOC108440810,LOC107753121,LOC107687962,LOC107684506,LOC107566017,LOC108264878,LOC101482209,LOC107553838 other upstream 70607 32059409 ~ 32150570 (+)
G55844 adam9,LOC107591921,LOC107702867,LOC107722987 other upstream 243758 31974681 ~ 31977419 (+)
G55831 LOC107691557,LOC108411168 other upstream 297082 31920820 ~ 31924095 (+)
G55502 NA other upstream 1596131 30347016 ~ 30625046 (+)
G56160 NA other downstream 1115655 33358214 ~ 33366012 (+)
G56193 aplnra,LOC108441910,LOC107753098,LOC107712463,LOC107550977,LOC107703172,LOC107554406,LOC107687998 other downstream 1162015 33404574 ~ 33406650 (+)
izumo1 NA other downstream 1322269 33564828 ~ 33595818 (+)
LOC103037863 adra2b,LOC108440671,LOC108264887,LOC107554404,LOC107753091 other downstream 1392593 33635152 ~ 33640077 (+)
fgf17 fgf17,LOC103025711,LOC107698084,LOC107678395,LOC107721084 other downstream 2260555 34503114 ~ 34511684 (+)

Expression


Co-expression Network