rflna (fam101a,LOC107687957,LOC107553832,LOC108412767)


Basic Information

Item Value
gene id rflna
gene name fam101a,LOC107687957,LOC107553832,LOC108412767
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 32417679 ~ 32440011 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229366.3
AGCTCTTGCTGCTCCCCGCGCTCATTTCAGCGCCgacagacgcacacacacacacacacacacacacacacacacacacagtcatacacacacatgctgggagttttccacagcagagcagaAGCAGAGCAGCTGAGTGGAGAAGCGCTGGAGCTTCAGGACTCTTCAGGATACTGAGAAACTTCAGCGACCTAAGTTCTCCTGTTTTCAGTGGATGTTACTGAGCTCCTGTGGATTTGTCCTGCTGTCTCTGGGCAGATGAACTGAAGACTGAGGAGATTCAGCTGTATTTACTCTCCTGCAGCCGGTCGGAGCTCCTGGTCTGAAGAGCACCGTGTGAAATGGGCTTTTCTGGCTGACTGTAACAGAAGATCACCTCCACCTCTACTGGATCCAGCTCTCCTGTAGCGAGACAGGACGGATTTTGttccttgttttttgtttccagCTCTTCCAGAAATGGTGGGGCATTTACACTTGCAAGCTATGGATGAGAGTTTGAAAGGAAAGAACCGTGAAGGGCTGCTAGACAGTCCGGATTCAGGGCTGCCTCCGAGCCCCAGCCCGCCCTTCTACTCCCTGTCCCCGGGGGTGGTGGAGCAACGGGCCAGCAGCTGCTCTACTCCAACAGAACCACATGTACACTACGGGAAGGACAGCAGAGAAGGAAAACTGCTTCCCTACCTGCTGCTGAACTCTCAGGGGGATGCTAAGGCCCGGATGTACCCTGTGGTTTATGGAGAAAGCATCAAGGTCAATCCTAAACCCAACAAGGAGTTAAAGTTCAGTTCAGCAGTGAAATACGCTTCAGACCGACACTACCGTGACCAGGTGTACTGCGCCCCGGTTCCTACAGTGACCTCCTACAGAGAGACGGTGGTGGCGGTGCACGACTGCACGTGGCGCAGCTTCAAGTCCGAAGTTCATTTAGAGCCCCGTCACCGACCGCTGCACTACCAGAGCACGGCCATCATCTTTCCCAAGCACGCCCGGAACACGTACCGCACCACGCTCAACTACAACGCCAACGGCAACGCCGGACAGCGCTGGTTCGTGTCCACAGTCAGGCTGGAGTCCAGCGAGGACACCAGTCCGTGCATCATCTACACAGAAAACCTCTGAGctccaacaacagcagcagcagcagcagcagtgctggaagACTCCTGTAGAGCGTGTCATTATTTCCTAACGCTAAAACTTCTTTTGGGTAGAGGCTTACGCAATAAAGACTTCCGCTGAAGAAAGGAAATGCAGGTGAAAGACCATTTAAAGGCCATTTCCATTTccctttccttttccttttggCTCTGTTGAAGAGTGAACTTTATTGAAGGTGTGACGGAACAGCAGTGTACAGCAGATCAGCTTTGGAACGTTTAAAGCCTTGTTTGCGTAGACGTCATTCAAGCTCCAACGAACGGAATGACCACAGACGTCCAGATTTGATTGCTTGGTGCTAGAGAGGTGAGAGGTGGCACTCTACAACAAGCGTTCCTCTTCTAATTGTCATGGCATTGTCATGGTTTTTGCCATGTTATAGCGCCACCTGCTGTATTggagtgtgaaaaaaaaaatcaaaaccacAGAGCTTGTAAACCACTTTTGCAAGCTTCTGCTTTTGCTGAGAGTATACAGAAGCCttgatttttatattcatacCCGTTGGGAGGTGGGTTgacatatttttgtgttttgtttttgttcttttgccTAGTTTGTTTACTCGTGATTCCTACCAGTTTTCAGAAGAACACTGCACCCCACTCTGGAGAAGAGCTTTAACTACATCCACTACCATCTTCTATTTACAATGCTGTAAAACAGTTCTGAAGCCTCAGAGCTCTATACTGTGTATTTCTGAGCTGAGAGATTGTAGAAAACTTTACCATGGTGGAACTTACAGACTTTTTTGTGAGGTGTATAAATGCTTGATTTGATTGCACTCATgctaagaaagaaagaaaaggtggtttgtttttcattcatattgtgtttttttcctccttaCTTTGGCTACAGTGGCTTTGGCTGAACTTAAGGTTGTTTAAGGCCTGCAGTTTAGGAACACTTGAACGATTGGACCAAAGATTTTATACGATTCAAAGAAAGCGATTGCATTGAAAGCATTGTAGCAGCTCAAAGCTGAGTAAGAACATCAGTGCTTGCACAC

Function

NR:

description
refilin-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229366.3 True 2173 mRNA 0.48 4 32417679 32440011

Neighbor

gene id symbol gene type direction distance location
LOC103025291 NA coding upstream 166670 32244560 ~ 32251009 (+)
LOC103022464 rassf2a,LOC108440819,LOC108265606,LOC106580442,LOC107687959 coding upstream 175120 32221177 ~ 32242559 (+)
nudt18 NA coding upstream 393061 32020346 ~ 32024618 (+)
LOC103029092 NA coding upstream 507868 31905217 ~ 31909811 (+)
LOC103046271 NA coding upstream 548435 31867154 ~ 31869244 (+)
LOC111192715 NA coding downstream 273538 32713549 ~ 32729908 (+)
LOC103026160 NA coding downstream 888775 33328786 ~ 33360143 (+)
LOC103024594 NA coding downstream 936008 33376019 ~ 33378613 (+)
gck gck,LOC107550933 coding downstream 1063604 33503615 ~ 33509374 (+)
LOC103039216 LOC108440668 coding downstream 1071500 33511511 ~ 33520503 (+)
G55955 NA non-coding upstream 112906 32304301 ~ 32304773 (+)
G55833 NA non-coding upstream 391774 32025596 ~ 32025905 (+)
G55846 adam9,LOC104959316 non-coding upstream 433389 31980914 ~ 31984290 (+)
G55821 ppiaa,LOC107756846,LOC108411171,LOC107691558,LOC108265559 non-coding upstream 449536 31911997 ~ 31968143 (+)
G55977 NA non-coding downstream 4722 32444733 ~ 32446803 (+)
G55978 NA non-coding downstream 7661 32447672 ~ 32448789 (+)
G55979 ncor2,LOC108412761 non-coding downstream 9487 32449498 ~ 32470210 (+)
G55988 ncor2 non-coding downstream 23577 32463588 ~ 32466440 (+)
G55995 NA non-coding downstream 49890 32489901 ~ 32493420 (+)
slc23a2 slc23a2,LOC108440813,LOC108265605,LOC107684505,LOC107753122,LOC100702287 other upstream 200268 32183077 ~ 32217411 (+)
LOC103024127 kcnip3a,LOC108440810,LOC107753121,LOC107687962,LOC107684506,LOC107566017,LOC108264878,LOC101482209,LOC107553838 other upstream 267109 32059409 ~ 32150570 (+)
G55844 adam9,LOC107591921,LOC107702867,LOC107722987 other upstream 440260 31974681 ~ 31977419 (+)
G55831 LOC107691557,LOC108411168 other upstream 493584 31920820 ~ 31924095 (+)
G55532 cgnl1 other upstream 1867618 30528862 ~ 30550061 (+)
G56160 NA other downstream 918203 33358214 ~ 33366012 (+)
G56193 aplnra,LOC108441910,LOC107753098,LOC107712463,LOC107550977,LOC107703172,LOC107554406,LOC107687998 other downstream 964563 33404574 ~ 33406650 (+)
izumo1 NA other downstream 1124817 33564828 ~ 33595818 (+)
LOC103037863 adra2b,LOC108440671,LOC108264887,LOC107554404,LOC107753091 other downstream 1195141 33635152 ~ 33640077 (+)
fgf17 fgf17,LOC103025711,LOC107698084,LOC107678395,LOC107721084 other downstream 2063103 34503114 ~ 34511684 (+)

Expression


Co-expression Network