polr2m (LOC108435653)


Basic Information

Item Value
gene id polr2m
gene name LOC108435653
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 30423138 ~ 30436533 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230460.2
caggagagagagtgtAGTTTGGtttgggacttttattttgaattagcAGTGGCACGCTTCACTGTCAGGTAGTGGCGGTGGTGCTGTGAGCGGGTTAGCTGTGAGGCTCTGAGCTGATTCACTGTAGAGTTTAATATTAGAGTTTATTATAgagtttttctgtatttattagaTTAATTCGGGTGATTTCAGCGCTCTGCAATGATTCTTACCGCCGCTGGAGGTTTCAGGCTGAGTCCGCCGCAGTGAGGCGAGGTGAGGTGGAGATGTCCGGCCTGGCGGGAGAGCTGAGCGGCCGCAGCagagaggagctgcaggagaTCCTCAGCAGACAGGAGAAGATCCTCCTCAACAAGAGGTTCGTTCAGACCCTTCCGGATAAGGGGAAGAAGATTACAGACTTTGTGGAGAAGGTGCGGCAGGCGCTGAAAGCTctggaagaggaggaggagaagcagGCCAGTCTATCCGCTATTGGAACAGAATTTCAGGTCCGGTATCTGCAGGCTTTAGCTCAGCGCAGGAATGCTGAGCAAGAAACTGTTAAAGAGGAGGAAAACTTGCTGGAAACCAGCAGAACGAATCAGCCAAACACAGAGGGCGTCATGGAGGCGTCCACACCTGCTGGCGGTGCAGAAGATCTGGTGGAGGCGCTTGGACGGGTCAATCTGTCTGAGGAAAAGAATCGTCCTCTGAGAGACACTGTTATTAACTCTCCACCTAGAAACGTCTTCAGTGCCACACAGTCTCAGAAGAAACCACATTATATAGAAGTGTTGGACAGAGCGGATGCAATAAGcgaaaaacacagatttaaacCTAATCAACAAAGACATAAAGGGTCAGGCTCCTCCTCTCCCGGTCACTCCTCTGGCAGTGCCACGCCCCTCTCTGCTGAGGCTCGGAGACAGAGGGACAGAAAGCACCTGGATGACATCACTGCTGCTAAACTCCCCCCACTGCACCACAGCCCCGCCCAGCTGCTCACCCTGGAGGAGTCGGCCGCCCTCCTGAGGGAGCAAACCAGAAAACAGCAGGAGGTGCAGGCCAGACTGGCTGCCCAGAAGTTGGCTGAGGGTCTGACTGTGACTATGAGCGGCTATAATCCTGAAGGTGTCGCTCTGGGCACCTACAGAGAAGTGCATGATGATGGAGCTGTCTCAGATGAAGACTGATGAAGAGTCTGGACTGTTTTCAGCTTTCTGAAATGAACACTGTTGGGCACAGACTGGAGTTCGAagctggctctggctctgggtTCTACCTCAGCCTTTACACACAGAGAGGCTTTTAACTCAGAGACCGGAGAGAGTACACTTATTTAATACCGTCTTCTACTCAGGTGTCTTCATGATTTGTTCTGTCCATTTCAGAAACGAATAATCTGCCTGTTCTGATGgtgataaaacatatatatacttAACCGTATCTGCGTATCTGGAACACCTTGCCTGCTGCTGGGGGTCTGAAGAAGATACTGTGGAACCCAGTATAGGTGTAATGTGGAGTGCTCTTACTGGAATAGTCCAGCATTTTTAACCTGAATTTCCTGTTGCTTTATTAAAACACGCCATTTGTTTCTCTGTCTCAGTACAGGTAACATTTAAGGGGCCTTATGTGACACCCTACTGGTGGACCCCCATCCAATTTGGTCATatcaattataaaa

Function

NR:

description
early endosome antigen 1-like

GO: NA

KEGG:

id description
K21987 POLR2M, GRINL1A; DNA-directed RNA polymerase II subunit GRINL1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230460.2 True 1669 mRNA 0.50 5 30423138 30436533

Neighbor

gene id symbol gene type direction distance location
LOC103027196 slc7a4 coding downstream 191464 30218671 ~ 30231674 (-)
sf3a1 sf3a1,LOC107550953 coding downstream 284364 30130388 ~ 30138774 (-)
pold2 pold2,LOC107747204 coding downstream 295210 30120936 ~ 30127928 (-)
bag4 bag4,LOC102796320 coding downstream 459816 29955687 ~ 29963322 (-)
LOC103021710 LOC103021710,LOC108414840,LOC108265329 coding downstream 472765 29946689 ~ 29950373 (-)
LOC103045861 LOC108435653 coding upstream 904 30437437 ~ 30497312 (-)
LOC103041976 cgnl1 coding upstream 92222 30528755 ~ 30549929 (-)
glt1d1 NA coding upstream 325970 30762503 ~ 30843300 (-)
tmem132c si:dkeyp-14d3.1,LOC107676622,LOC107728438,LOC107659267,LOC107550917,LOC108442515 coding upstream 531079 30967612 ~ 31432651 (-)
LOC111192668 NA coding upstream 1140820 31577353 ~ 31579788 (-)
G55560 NA non-coding downstream 73517 30346432 ~ 30349621 (-)
G55550 LOC107747660 non-coding downstream 132191 30289934 ~ 30290947 (-)
G55491 NA non-coding downstream 207548 30150151 ~ 30215590 (-)
G55479 NA non-coding downstream 319032 30100778 ~ 30104106 (-)
G55466 NA non-coding downstream 333883 30044452 ~ 30089255 (-)
G55584 NA non-coding upstream 162458 30598991 ~ 30603604 (-)
G55589 NA non-coding upstream 182624 30619157 ~ 30621874 (-)
G55558 NA non-coding upstream 185392 30621925 ~ 30623963 (-)
G55592 NA non-coding upstream 199084 30635617 ~ 30636229 (-)
G55615 NA non-coding upstream 390519 30827052 ~ 30827583 (-)
LOC103046862 LOC108410878 other downstream 488708 29896515 ~ 29934430 (-)
kiaa1671 NA other downstream 582385 29744028 ~ 29840753 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other downstream 1822628 28554727 ~ 28600510 (-)
LOC111192657 NA other downstream 1999183 28417733 ~ 28423955 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other downstream 2265689 28153421 ~ 28157449 (-)
LOC103027498 LOC108411246,LOC106585447 other upstream 1198948 31635481 ~ 31690808 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other upstream 1294931 31731464 ~ 31740221 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other upstream 2335494 32772027 ~ 32802160 (-)
LOC103023237 NA other upstream 2712541 33149074 ~ 33177650 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other upstream 4654197 35090730 ~ 35108420 (-)

Expression


Co-expression Network