LOC103022374 (tcf7l1,LOC108265410,LOC107556226,LOC106580381)


Basic Information

Item Value
gene id LOC103022374
gene name tcf7l1,LOC108265410,LOC107556226,LOC106580381
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 34707458 ~ 34751853 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231484.3
TCCTGTGGTGGAGTGAGGGAGGTCTCTGGCCCTTTAAGCCGCGCGCTCTCTCAGCTCCGTGTCCGCGCGCTCCGAGCCGCTGAGCTAGTGTCGTCTTTCAGCGCGTGAGCTCGAGCTCCTCCTCTCCGTGCGCCGCGTTCTAAACGAAGCCCGCTGGCCGCGCGAGCCCGAGCTCCCGCCACTCCGGCAGCGTGAGCAGCGTCCAGCCTCGGttctgcactctctctcttttcctccctccctctttctctctctctctctctctccccctctccctctctctccaagactctctctctcacactctctcactcactcactcacccctCTGTCTcccccttctcctcctcctcagcccAACGGCCGTTCGGGAGAGGCGACTGAAGTAGTCGGTCATTTTTGACGGTTTTCGCGACTTTCCAAGACATGTTTTGCTCCCGGTTTGGACAGAAGGGAAGATTTTTCTGTCAGAAAAGACTTTTACGTGCGTTTTGAACGTTTCCGCCTCGGTTTGTTCCACTTTTGAGAGTGTTTCGGGAGAGTAAGCGAGTGAAGGAAGAAGGGACGACGTGACCGTTGCAACTTTGGCTGCTCTGGAAGCCTCAgaaggaaggaggaggagaagtgcTCGAAGTGTAAACTCACTTTTTCCTGCCTCTTTCGACGCGAAATCGCCCCGAAGTGCGAGTGTGGATTACAGAAAGTGGATTGAAAAAGGAAACTTTTTGGGGTtggacttttatttttcttttgttgcttttttttcgTCTGTTTTTCCTCCTCGCCGCTTTTGTTCTCCTCAGATTTACAAGTACGGTTAGCCAGCTAGCGGCCGATTTGCTAACTAAGTAACTTACGtgagacattttttttgtcctctCGAGACATTTAAAGTAGTTCGGGAACCGTTTAAAAGTCACTTATGCCCGTTTTGAAGTAGTCATGGACATTGTGGATTTGTCTTCCTTTGCCGAGGATTATTTCTGAACCCGTGGGAAGTGCCTCTTGTTTTCCTCTTCTTCTGGTTGTTGTTGTGCTTTCTTTCGTAGTTAACGTCGTGTTTTCCTGCTCCTCGAGAACTGAGACTACGTTacggattgagagagagaaaagtgatCCGCTAGTTGTCTTCACagtaataaccctgtttttcgGAAACGGGGAAACAATATACCCGGTTTAATAGTgggaaagtaaaagtacaagctAAACATGCCCCAGCTAAACGGAGGCGGTGGGGATGATCTGGGGGCGAACGATGAGATGATCTCCTTCAAAGACGAAGGAGAACAAGAAGAGAAGATCTCCGAAAATGTGTCAGCCGAAAGAGACCTGGACGATGTAAAATCCTCTCTGGTAAACGAATCTGAAAACAACAGTAGCTCCTCTGATTCTGAGCAAACAGAAAGACGCCCTCAGCCCAGACCTGACACTGAAAGTTATGAAAAAGCCAGAGAGTACTTTAGTGAAGCTTTGAGAAGACAGCAAGATGGAGGCTTTTTTAAGAGCCCACACTATCCAGGCTACCCATTTCTAATGATCCCGGATCTCGCCAGCCCTTATTTATCCAACGGCGCCTTGTCTCCCAGCGCTAGGACGTATCTGCAAATGAAATGGCCTCTGCTGGATGTGCCCAGCTCTGCAGCCCTGAAGGACTCCAGATCGCCCACACCAGGACACTTGTCTAATAAGGTGCCAGTGGTGCAGCATGCTCACATGCACCCTCTGACCCCCCTCATCACCTACAGTAATGATCACTTCTCCCCGACTACACCGCCTGCACACCTCTCCCCAGAGATTCTGGACCCAAAGACAGGAATTCCACGGACCCCCCACCCTTCTGAGCTCTCCCCATATTACCCACTGTCTCCGGGGGCAGTTGGACAGATCCCTCATCCTTTGGGATGGCTTGTCCCACAGCAAGGACAGCCCATGTATTCAATCCCCCCTGGAGGTTTCCGACACCCTTACCCAGCGCTTGCTATGAATGCATCCATGTCcagTCTGGTGTCCAGTCGCTTTTCTCCTCACATGGTGCCTCATCATCCTCACAGTCTCCATCAGACAGGAATTCCTCATCCTGCCATCGTCTCACCTGCCATTAAACAGGAGCCCAACGGAGACCTGAGCCCCACTTCACACACgaAGTCTCCTGGGCCTCCTAAGAAAGAGGAGGACAAGAAGCCTCACATTAAGAAGCCCCTGAACGCCTTCATGCTCTACATGAAGGAGATGAGAGCTAAAGTGGTGGCTGAATGCACGCTTAAAGAGAGCGCTGCCATCAACCAGATCCTGGGCCGAAGGtggCACTCTCTGTCTCGAGAGGAGCAGGCCAAATACTACGAGCTGGCCAGGAAAGAGCGGCAGCTGCACTCACAGCTCTACCCCGGCTGGTCCGCACGAGATAACTATggCAAgcggaagaagaggaagagagataaTAAGCCAGACTCAACAGTAGAAGATTTCTCAGCGCGGAACAAGAAGCCTTGTGTGCAGTACCTCCCTCAGGAGAAAATGATCGACAGCCCGGCCTCATCTCACGGCAGCATGCTGGACTCCCCGGCCACGCCCTCCGCCGCGCTGGCCTCCCCCGCCGCCCCAGCGCCCACACACTCCGAGCAGGCCCAGCCGCTGTCCCTCACCACCAAACCCGATCGCCATCACCCTCACTTCTCTCTGATCTCCAAACCTtcatcctcctcatcttcctccatctcctcctcttcctcctcttcgtCTTCTTCAgcatcctcttcctcctctcaccccgccatctctctctccactggCTCCCCGGCCAGCCAGTCCACTCCTCCCCTCCTCTCTCGGCCAATCCCCTTCACCTCCCTGCACCACTCCCTCCTGTCCCCGCCCTCCCCGTTCCACCAGGCTGCCCTGCACTCCCATCATGCCCTGTTCCAGTCGCAGCCTCTCTCCTTGGTAACCAAATCGGCCGACTGAACCAGCAGGAAGCGGAAATCCTCCCTCGTTTTCTCGCTGCCCTTTTAAACGTGCTGTACATTGCTTTTTACCTTTTTCAAATAGATGTCAGGTTAACTTTTTTGATAAGTGAAAAGGAAATGAATATTATTGGTCAATATTTGATCACCCGctttttctgtgtctctctatgaaacagtgtattttttgtaaAGTCTACTTTGGAACTGGTTTCTTATTTGATACAGTTATCCTGCAAACTACTTGTATAAAGTAAACATGTATTGAAAACTTCTTTAATAAGATAagaaggaacaaaaaaaaattcttaaagCTTACGTGTAATTAATGGTAGTTTTTGAATTTTAATTCATAGTACAAGCAATTTATTAGAATCCTTTGCAACTACCCCTCCAGTTTTGAAGTGTGTGAACTTGATAAATAAAACTTGTAAATTGTTTCTAGAATA

Function

symbol description
tcf7l1 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in canonical Wnt signaling pathway and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including axial mesoderm morphogenesis; regulation of transcription, DNA-templated; and somatic stem cell population maintenance. Located in cytosol and nucleoplasm.

NR:

description
transcription factor 7-like 1-B

GO: NA

KEGG:

id description
K04490 TCF7L1; transcription factor 7-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231484.3 True 3412 mRNA 0.51 12 34707458 34751853

Neighbor

gene id symbol gene type direction distance location
tgoln2 LOC108426653 coding downstream 21342 34677456 ~ 34686116 (-)
stambp stambp,LOC108426652 coding downstream 31978 34666351 ~ 34675480 (-)
LOC103022681 NA coding downstream 67655 34631304 ~ 34639803 (-)
LOC103024249 LOC108426649 coding downstream 90337 34601412 ~ 34617121 (-)
LOC103024553 si:dkey-90l8.3,LOC103024553,LOC108426648,LOC107698086,LOC107714563,LOC107556214,LOC107563853,LOC108264996,LOC105889949 coding downstream 120596 34578817 ~ 34586862 (-)
LOC103027077 NA coding upstream 180833 34932686 ~ 34939352 (-)
LOC103046374 cox5b,LOC103046374,LOC107602047,LOC108426657,LOC106567989,LOC106563057,LOC107558099 coding upstream 234220 34986073 ~ 34989263 (-)
serpind1 serpind1,LOC107738496,LOC107698014,LOC107560052,LOC107671000,LOC107722856,LOC107559590 coding upstream 303748 35055601 ~ 35060999 (-)
LOC103038635 slc25a1b,slc25a1,LOC108412497,LOC107754397,LOC107657208,LOC107722854,LOC107670994,LOC105898475 coding upstream 363657 35115510 ~ 35130946 (-)
LOC103043388 LOC108412499,LOC107559593,LOC107754396 coding upstream 383898 35135751 ~ 35175961 (-)
G56349 NA non-coding downstream 286257 34408840 ~ 34421201 (-)
G56336 NA non-coding downstream 303940 34397594 ~ 34403518 (-)
G56332 NA non-coding downstream 327647 34346112 ~ 34379811 (-)
G56333 nr6a1,nr6a1a,LOC107721088,LOC107698081,LOC107753334,LOC107678448 non-coding downstream 342107 34346316 ~ 34365351 (-)
G56326 NA non-coding downstream 377929 34328735 ~ 34329529 (-)
G56512 NA non-coding upstream 122711 34874564 ~ 34876645 (-)
G56519 NA non-coding upstream 161393 34913246 ~ 34913968 (-)
G56532 NA non-coding upstream 219396 34971249 ~ 34991135 (-)
G56548 NA non-coding upstream 284082 35035935 ~ 35036274 (-)
G56562 NA non-coding upstream 319463 35071316 ~ 35071759 (-)
LOC103023237 NA other downstream 1529808 33149074 ~ 33177650 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other downstream 1905298 32772027 ~ 32802160 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other downstream 2967237 31731464 ~ 31740221 (-)
LOC103027498 LOC108411246,LOC106585447 other downstream 3016650 31635481 ~ 31690808 (-)
LOC103046862 LOC108410878 other downstream 4773028 29896515 ~ 29934430 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other upstream 338877 35090730 ~ 35108420 (-)
acaa2 acaa2,LOC107671002 other upstream 533569 35285422 ~ 35293421 (-)
c6h22orf39 NA other upstream 544488 35296341 ~ 35299750 (-)
LOC103038782 slc25a25a,LOC108430373,LOC107754405,LOC107671014,LOC107699669,LOC107560063,LOC107559565,LOC107752985 other upstream 570132 35321985 ~ 35332434 (-)
G56638 NA other upstream 668977 35420830 ~ 35458874 (-)

Expression


Co-expression Network