stambp (stambp,LOC108426652)


Basic Information

Item Value
gene id stambp
gene name stambp,LOC108426652
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 34666351 ~ 34675480 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231490.3
CCTCAGAGTGACCCACAGCAGGAAAGGGAAGTGAGGAGTGAGGAGCTCCACTGAAGGAGATGAATGTGAGCAAGCTGTTTGGGACTGATATTGTCGCTGAAATGAATCGTTTCGCAATGGAGGAATTTATCGACCTGTGCTGATATATCCACCCCATCTAGCGACCTCCAGAACCCAGCgggacacagacacacaccggGCTGCAGTCAGGTTGCGTGTAGAGTGTGGCTGCCGCTGTTCATCATGTTGGACCACGCAGATGTGAGTTTAACGCCGGAGGAGAGAGTCCGTGCTCTGACCAAGAAGGGCAGCTCAGTGGACGTCAATGAGGCCGTTCCTGCCCGCCGCTACTTCCGTTCAGGCATGGAGATGATCCGCATGGCACACGTCTATGCTGAGGAGGGCAACCTGGAGCACGCTTTTGTCctctacaataaatacatcacGCTTTTTATCGAGAAACTTCCCAAACATCCAGAGTACAAATTGTCCAACATTCCTGAGAAGAAGGACACTCTTAAAaagctgaaagagaTAGCCTTccctcaggctgaggagctgaaGAAATGCCTGCTCAGGAGATACGAGAAAGAGTATGCTGAGTATCTGGCCAAAAAAcgggAGGAGACTGCTGCTCTGGAGCGAGAAATGTGTCGGCAGAAGGAGCTGGACGCTGAGCGGAGGCGTGTGGCGGACCTGCAGAGGAGGCAGCTGGAGCAGGAGcagttcagtgtgtttgagGAGATGATCCGGCGGAAGGACCACGAGCGCGAGCGTCAGCGCGTCGTCCGTGACTTCAGCACTCCCACTTCACCTCCCGACGACGCCCCGCTTATTCCTGGCATCCAGGGCCCGCCAATGCCTTACCCAGCATCCCCCACACCACCTCAGAGCCCTCAGTACCCCTCCCTCAATAACAGCACACCATCAGCGCCAGCCTCGACCAATCCGGCTCCTCCTCCCACCTTTGACCGCTCGCTCAAACCAAGCGCTGGCGACAGGACAGCCAACAGTACACTGGTGGATGGTTTGAGGCAGGTATCCGTCCCCTCAGAACTGTGCACTAATTTCCTGCGCTTGGCCAACAACAACACAATCCAAGACAAGGAGACGTGTGGAATACTCTGTGGTCAATTGACGAGGAATGCGTTCACAGTGACGCATGTGATAGTGCCTAAGCAGTGTGGTGGCCCAGATTTCTGCGACACAGAGAACGAGGAGGAGCTGTTTCTGGTGCAGGATCAGCACAACCTCATCACACTGGGCTGGATACATACTCACCCGACTCAGACAGCCTTTCTCTCCAGTGTTGATCTTCACACTCACTGCTCCTACCAGCTGATGCTACCAGAAGCCATCGCCATCGTCTGCTCTCCTAAATTCAACCAGACAGGCTACTTCAGACTGACTGATTATGGGATGGAGGAGATTTCCACCTGCACACAGAAAGGCTTTCACCCACATTCCAAAGAGCCTCCCCTGTTTACAGGTGGCAGCCACATTGTGATCACAGAAAGCACCGTCACGATGTTAGACCTGCGCTGATCGACTCCAGCCCCATAACAGCGGTACAATGAAGCATTTTAAACTTGGATAGCAGCTATATACCATTATTCTTCTTCTTAACACGCTATGTGGACCGACACTTGCTAAACGTGGGATGGTTTTATTTTGACCAATCAGCATTTACAGGTGGTGGGATTTCTTAAAGAGACAGACATCACTGTCTGCGATAAGCACTTTGGAAGAGAAACCTCTCTTGGACTGAGGGAAGTCTGTACAGACATCTGCTGGGAGCTCAGGGACGTATGCTCATCTACAGAACTGTAACATTACCACCTTTCACACTCATGACTGACTTGATCGTCTACTTTGTTTGGTATTAATTTTCAAATCATGTCTGTTATTTTGTTCTAGTCTGTGTTTTATGATGGCGATGGTGGTTCACACTAACATAGCTCATCTGTGTAAATAAAACTAAGGAAACctgg

Function

symbol description
stambp Enables protein domain specific binding activity and thiol-dependent deubiquitinase. Involved in negative regulation of Ras protein signal transduction and negative regulation of phosphatidylinositol 3-kinase signaling. Acts upstream of or within mitotic cytokinesis and protein deubiquitination. Located in cleavage furrow; cytosol; and nucleoplasm.

NR:

description
PREDICTED: STAM-binding protein-like A

GO: NA

KEGG:

id description
K11866 STAMBP, AMSH; STAM-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231490.3 True 1991 mRNA 0.51 10 34666351 34675480

Neighbor

gene id symbol gene type direction distance location
LOC103022681 NA coding downstream 26548 34631304 ~ 34639803 (-)
LOC103024249 LOC108426649 coding downstream 49230 34601412 ~ 34617121 (-)
LOC103024553 si:dkey-90l8.3,LOC103024553,LOC108426648,LOC107698086,LOC107714563,LOC107556214,LOC107563853,LOC108264996,LOC105889949 coding downstream 79489 34578817 ~ 34586862 (-)
LOC103025191 LOC103025191,LOC108426622,LOC108265895 coding downstream 127295 34535296 ~ 34539056 (-)
adgrd2 LOC108414364 coding downstream 198196 34440070 ~ 34468155 (-)
tgoln2 LOC108426653 coding upstream 1976 34677456 ~ 34686116 (-)
LOC103022374 tcf7l1,LOC108265410,LOC107556226,LOC106580381 coding upstream 31978 34707458 ~ 34751853 (-)
LOC103027077 NA coding upstream 257206 34932686 ~ 34939352 (-)
LOC103046374 cox5b,LOC103046374,LOC107602047,LOC108426657,LOC106567989,LOC106563057,LOC107558099 coding upstream 310593 34986073 ~ 34989263 (-)
serpind1 serpind1,LOC107738496,LOC107698014,LOC107560052,LOC107671000,LOC107722856,LOC107559590 coding upstream 380121 35055601 ~ 35060999 (-)
G56349 NA non-coding downstream 245150 34408840 ~ 34421201 (-)
G56336 NA non-coding downstream 262833 34397594 ~ 34403518 (-)
G56332 NA non-coding downstream 286540 34346112 ~ 34379811 (-)
G56333 nr6a1,nr6a1a,LOC107721088,LOC107698081,LOC107753334,LOC107678448 non-coding downstream 301000 34346316 ~ 34365351 (-)
G56326 NA non-coding downstream 336822 34328735 ~ 34329529 (-)
G56507 NA non-coding upstream 33766 34709246 ~ 34710923 (-)
G56512 NA non-coding upstream 199084 34874564 ~ 34876645 (-)
G56519 NA non-coding upstream 237766 34913246 ~ 34913968 (-)
G56532 NA non-coding upstream 295769 34971249 ~ 34991135 (-)
G56548 NA non-coding upstream 360455 35035935 ~ 35036274 (-)
LOC103023237 NA other downstream 1488701 33149074 ~ 33177650 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other downstream 1864191 32772027 ~ 32802160 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other downstream 2926130 31731464 ~ 31740221 (-)
LOC103027498 LOC108411246,LOC106585447 other downstream 2975543 31635481 ~ 31690808 (-)
LOC103046862 LOC108410878 other downstream 4731921 29896515 ~ 29934430 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other upstream 415250 35090730 ~ 35108420 (-)
acaa2 acaa2,LOC107671002 other upstream 609942 35285422 ~ 35293421 (-)
c6h22orf39 NA other upstream 620861 35296341 ~ 35299750 (-)
LOC103038782 slc25a25a,LOC108430373,LOC107754405,LOC107671014,LOC107699669,LOC107560063,LOC107559565,LOC107752985 other upstream 646505 35321985 ~ 35332434 (-)
G56638 NA other upstream 745350 35420830 ~ 35458874 (-)

Expression


Co-expression Network