ercc6l2 (LOC107724913,LOC107689281)


Basic Information

Item Value
gene id ercc6l2
gene name LOC107724913,LOC107689281
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 8051690 ~ 8070806 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231600.3
GATAGATAAACAGGAGCTGCTCCCTGCGCCCTGTGAAAGGAAGCCGGCTATGCTAGGCTAATCTAGGCTAAACCCTAAAAATAACCGgattattctgtgttttacgGACAAAAGCGAAATTTTCTTCTATTTAAACAGAAGCGGATTTATAATGAAGAATTGCTGCGTCCGCGGGTGAACTTTATTACTCATAAAAATACGACCGACCTGCGTTACTAGAATAAAGCGTAAGCTAGCTAAATAGCCATTTAGCCTTGTACCTGCCTTTAGCCTGATGAGTAACTGTTAGTTATCTAGTgaactagttagctaagctaaataactTGATAGGGGTGTCTAAATGAGCTAAAGGGTGGCTAGGTTTCAAAGCAAATACATCTATTTATCTACCTACTTAATTTTCTTAAACCTTAATTAGGATTATTAGCTAACTAGCCAACCTAAACAAGTGACTTTTGGTTTGTTTACTAGACAGATACTAGagttagctaacccagctaagtTATCCTATTTAGgttaactaacgttagctaatatTGCTGGGTTAAAAGTAAGGGTCTGtcaatatgaaaatattaaagtcgtcaatatacaatacaatatacactCCTGATCTTGTCTTAAatattatttgtgtttaaagAGCACTTGCCAGCTTCTGGTAGTTGTCTGCTTAATGTTGCCCGGAGGCAACACATCAAAAACATCAGttttaatagataaataaaaacaaaacagccgAAATAGGCTTTTAAATAGGCTTTCACAATATacatctttacattttaaaccagcTGGGGAACAGTGTAATAATCAAAAAAAGCCATTAAGGGTTAAGtggcattttctttaaaaaggcaTTTTGTCTGCTTGTCAAAATATCATGATTAATAATTTTTATCGTGAAAGtgtctttaaaataataaagataatatttttatatttatattttatcaccAGCCctaagaaaaacataatggGTGATATCAGGATCAGCAAACATTTCTGCAGACAAGTCTAtataatttacaatatgttGATAATGTAAATATCATGACATGCAGGCCTATaccttatataaataaaatcaaatagaataaaaatagtgttttcaATCTAAATTGACATACAGGCTCTTTAACATTAATGGACTCTTCTTGATAAGTAAAGGTTTTGTGGGTGTATTAATTGTAGAATTTATtctacaataaatcaataatgtaattatcgtgacaggcatACACACAGGCTATATCCCTGTTTTGGAAaccttttaaagtaatttttaagcAGTTAACCTAAGTATTTTAGTatctataatgtaaaataaaactgctagattttttttacagtattcagTCAAAATATATAGAGCCACAAAAATTTAGCTTGATTTGTTCTGATTATGCCATTATTGAGATGATTATGTTttgtagctaactaactaaactGTTATTGGTCTACCGTAGATTCAATTGTGAGATTCTTATCCACTTATTTTAGTAAAGCtaataattaagctaattaagtattaagtattgAACATTGGAAACTGAGGgcagaaatgtagttttttttgcattgtctttCTTTGGACAAGAAGCTACGTACTGTCTAAAAAGAAATGTCCCTCAGAACCCTATGGATCAAACTGGCTGTACCCACATTTGTACAATTCTGTAAAAATAGAGAAAGGTGATACTGGTTTCAATCCCACCTCTCAGAATAATGAATGCCCCATTTGAAGATGAGAAACCCCTCTTTCATACGAACCAGAAGCCTCCTGGTCCATCTGAACCATTTGTCCTGTCCAAAAATGGGCATCAAGTACCGTACACTATTAACAGGTACCTAAGAGATTACCAGCGGGATggagttaaattcatttatgACCGATACATGAAGTCCAGAGGCTGCATCCTGGGTGATGACATGGGCCTTGGAAAGACTGTCCAGGTCATCAGCTTCCTGGCTGCTGTTCTGCAGAAAACAGGGACCTGGGAGGATGTGGAGAATAACAGGCCAGATTTTTTGCAGTCACAGAGATCCTGCAAACAGTCCAAATTAAAGAAGgtgtttctgatTGTGGCTCCCCTGTCTGTGCTGTACAACTGGAAAGATGAGTTGGACACTTGGGGCCACTTCAAAACTGTTGTAGTACATGGTGTCAAGAAGGAAGAGGAACTGACCCGAGTAAACAGAGGAAAATGTGAGATTGCACTGACCACCTATGAGACCCTCAGACTCTGTCTAGACCAGTTTAACAGTATTGACTGGGCTGCTGTCATTGTGGATGAAGCTCATAAGTTAAAAAACTCCAAGTCCCAGATCACTCAGGCAATGAAGGAGATGAAATGTAAAGTGCGGGTGGGACTGACTGGTACAATCCTCCAGAACAACCTGGaggaactctggtgtgtcatgGACTGgGCCATCCCTGGGTGTCTCGGTTCCTTGGGTTGTTTTAAGAACAGGTTCTCTGACCCCATTGAACAGGGTCAGAAACACAGTGTGACGAAGAGGGCCTTAGCAGAGGGTCGCAAGGCTGTTCAGACTCTAGCTAAAAGACTGTCCCGCTGGTTCCTCAGGAGAACCAAGGCCCTCATCAGCGACCAGCTCCCCAGAAAAGATGACCGGGTTGTGTATTGCTCTCTGACAGACTTTCAACAGACAGTGTACCGTGCTGTGCTGGACACCAATGATGTGAAACTTCTGCTGCAGAGCTCGGCGAGATGTCACTGTGGCAGCGGACGCACCAGAAAAAAATGCTGCCACAAGTTCAATTCAGATGGGGTACCAGTCAGACACATGTATTTCAGCTATCTGGCTATACTAAGGAAGGTGGCCAATCATGTTGCTCTGTTGCAAACAAAAGAAGGAACAAGTAAAAAACAGGAGAAATACGTGGCTGATATCTGTGAACAAGTCTTTAAGAAGTTTCCAGAGTTTATGGAAAGATGCAAGCAGGCAGCCTTTGAGGCCATGTCCGACCCTATCTACAGTGGAAAGATGAAGGTTCTGCAAAGGTTAATGAATCACTTCAtcaaaagaaaagacaaaattCTCCTTTTTTCAATGTCAACTAAGCTCCTGGATGTTCTGGAGAGCTACTGCATGGCTGAGGGTCTTGAATACCGCAGGCTGGACGGAACCACGAAGGCTAAAGATCGTGTCCACATCGTCAAAGAATTCAACAGCTCAAGTGACATCAATCTGTGCCTGGTGTCTACCATGGCCGGTGGTCTTGGACTCAACTTTGTTGGCGCTAATGTTGTTGTCCTGTTTGATCCGACGTGGAATCCAGCAAATGACCTTCAGGCTATTGACAGGGCATATCGCATTGGACAGTGTAAGGATGTGACTGTCTTCAGGCTCATCTCTCTGGGCACGGTTGAGGAGATCATCTATTTGCGGCAGATTTACAAACAGCAACTGCAGTCATCAGTGATCGGGATGGAAAATGCTCGGAGGTACTTTGAGGCAGTGCAGGGTGCAGAGGGCCAAGCAGGAGAGCTCGGCATCCGGAACCTCTTTCGGTTACAAACTGATGGAACTTGCCTCACACACCGCATCCTGGAGAGGGAGGGCCGGATCGAGGTGGGGATCAAGACGGCCAGAACGCAGGCAACGGAGGAGAGGATGCGAGAGCCGGACCCAGTGCCTCTGTCTGGAGATGCAGAGCAGGCTGGCAGTTCAGCTGGGACACGCAGCACCAGTGCCAGGCACGCCGATGCTGGAGTCCTGGACTTCAGCAGTGCCAGTGAAGATGAGGATCCCTGTAGCTCCAGATCCAAAGCCACAGACGCGAACGCAGGAGATGAGCCTGGGGCGGGCACTGGCTGCGGAAACATGGGCCTTTCTGCACTGCTGCAGAAACACGCAGCTCACAGGGCACAAAGGGGCTCAGACAGCAGCGACGAGAGCGAGACTGAGGGAAACTGGGAGGGCTGGGACCCAGTGGAGCCCCAAGCAGCTGAAAAGAAGGGTGCTCAAGCACGCTGGGCTTTGTCTAGTGACTCTgaggaggagagaggaaaaGCTCCAGGCAAGAGAGTGCATTCGTCTTCAGCAAAGCCTGCTGACCACCATGCTGTGGACCACCATGTGGACATGGAGGACTCAGAGGATCTTAACATTCCTCAGAAAACTAACACTAAAGCACGGCAGAAGCAGAAGCATAGCAAATTCACAGTAAAAAGACATGAGGAGGAGATTGAGAGCTTTACCTCATCTGAGGATGAGGCTCCCGTGAGGAAGATGTCTAAGTCTAAGACAGGTGTCAGTCATGCCTCGTCTCCACACTACAAAAAAACAGTCCTCGGACCCCCTTTGAGTATGCAGAGTGCTGCCCGAAAATTAGTCAAGTTTACAGGCCTTAAAAGCCCAATCACTCAAACAAGACACTCAACAGCCAACAGCACTGGAACCATAGACACTTTATTAGGTGGGCTTCAGGAAGTCAGCTACTCCCACTCCAATCAGAAGGTCGTGGGCTCGAGCAGGACTGAAAACCGCCTCAGCCGCGCTGCCTTACGAGACGTGTTCGAACTCAAAAAGCACTCCCAGCTCCCAGCAAACCACCTGCTCGACATATCTCAGACCCAGTCTGGTAACACCCAATCATCTAATCATACACCCACGGATGGTGGAAGGAAAGACTCGAAACAGGCAAATCATGACCGGCCTCATCTGCAGCATCAGGTCTCTCACTTCATCAGAACTTCCCACCACACCCAGAATGCAACCATTAGTGTCGGCGAGACACCCGCTGCATTCTGCAAGCAGCAGATGGAAGAAATGGCACGGTTCTTTAGAGCTAAGTCGGTGCAAGAATTTGCGGAAGAACTTGTAAGCAGTACTTCAGCTGAGCGATTGGCCAAACTACGCGGGTTCTACAGCCACAGGAACCCTGAACTCAGTGACCTCATCAAACAAACTTTTCCTAAACCTGAAAATAAGCCTAAAGCACCCGTTACACCAGCTTCTTCTACATCCACTGCAACTAGGCATAGAACTACCTCAAAAAGAACCCTCTCAGACTCAGCGCTGAGACCGCTGCATGAGGAAGAGGAAGCAGAGGAAGACAGAAAAGGCAGAGAAACCATGAAAAAGAACAGAGCGTCTAATGCAGAGAGTGCATTAACCCCAAATTATCGCTCCAATGGTCAGACTCGACAAGGAAGAAAGAGCAGGATTTTATCTCCAGAGGCGAGCCGAAGCCCAACTGAACTACCTCATAGTCCTTCTGGTACAGACATTAAACctcaaaatgacattttaacCAGGACAGAACGTAACCCTGGTCTAGCCCAAGTCACAAGACCTTCTAAAGATAAACCTTCAACCTCTTCAGAATTACCCTCTTCCTCCAGAGCTGCAGAACCAGGCGGTTCCCAACCAACCAAAAATCTCATCACTGATCTCATAGGTGACACTTCCATTCTTGACGACCTCTTCAAACCAAAGAGAAGTGCAGACCGCCCAAAACCAGCTCCAGCACCCATACCCTCGCCCACAGAGAGGACCAAGAACAGAGGAAAGGACTTCTGGGACATTCTGAACGAGGGGAACGAGGAGAGCATTAATAAGCTAACGGACCTGACTCAGGTGGAGAAGTTCTGTAGGAGTGTGAGCGTTTCTGGAAGGTCCAAAAGTGAGAGTAGTCTTGAAAGCTCCCAGCTTTGGAAAAAGAATGAGAAATTTATTTGGAAAAGATAAGGAAAGATGTCTCTGTACAGAGAAGCAAAGCTGTCTGTCTATTggttataatattgttttttttgttattattgtatttattttatttgagggTATAAAATTACAAATGTGAATTTTATAGGGATTCCTTTAGTTTTAAATATTCTGTTATTGTTGAATGTATTTTACTTTCTTATTTGATAATATATAGTTCCTTACTGTAGacttttacattattataattttttttttttctaatttacttgagttgttattttattaattaaaccttttaaatgacccagatttgttttattattatttctccaGTATGTATAACCTATATCCTGTATTATAACCGAGATATTAATATTTtgcaataaaacatgttttttagtaGCATGAA

Function

NR:

description
DNA excision repair protein ERCC-6-like 2

GO: NA

KEGG:

id description
K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231600.3 True 6103 mRNA 0.43 18 8051690 8070806

Neighbor

gene id symbol gene type direction distance location
dock8 dock8 coding upstream 332697 7618199 ~ 7718993 (+)
lrif1 NA coding upstream 435707 7608880 ~ 7615983 (+)
apex2 NA coding upstream 443818 7603019 ~ 7607872 (+)
csde1 csde1 coding upstream 455113 7573582 ~ 7596577 (+)
porcn porcnl,LOC108437582,LOC108265978,LOC107549961 coding upstream 480132 7556357 ~ 7571558 (+)
slc20a2 slc20a2,LOC107594502,LOC107724891,LOC107669617,LOC107711867,LOC107602837 coding downstream 39016 8109822 ~ 8176783 (+)
LOC103033636 NA coding downstream 173076 8243882 ~ 8244724 (+)
LOC103034161 LOC108437597,LOC108437601,LOC108265423 coding downstream 183762 8254568 ~ 8257952 (+)
LOC103035131 LOC108437597,LOC108437601 coding downstream 188797 8259603 ~ 8262730 (+)
LOC103034488 LOC108437599 coding downstream 193358 8264164 ~ 8269334 (+)
G50535 NA non-coding upstream 5637 8045701 ~ 8046053 (+)
G50439 NA non-coding upstream 108942 7939601 ~ 7942748 (+)
G50227 NA non-coding upstream 969344 7003089 ~ 7082346 (+)
G50258 NA non-coding upstream 971549 7077233 ~ 7080141 (+)
G50253 NA non-coding upstream 979204 7066875 ~ 7072486 (+)
G50550 NA non-coding downstream 31269 8102075 ~ 8102287 (+)
G50565 NA non-coding downstream 131631 8202437 ~ 8203419 (+)
G50580 NA non-coding downstream 231710 8302516 ~ 8302910 (+)
G50656 NA non-coding downstream 684839 8755645 ~ 8756009 (+)
G50770 NA non-coding downstream 874467 8945273 ~ 8946372 (+)
c6h9orf3 NA other upstream 167632 7730684 ~ 7884058 (+)
trnae-cuc NA other upstream 1067429 6984190 ~ 6984261 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other upstream 1109712 6863356 ~ 6941978 (+)
G50063 NA other upstream 1674985 6371520 ~ 6376705 (+)
LOC103023397 NA other upstream 2262425 5777052 ~ 5789265 (+)
G50568 NA other downstream 136536 8207342 ~ 8221162 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other downstream 199442 8270248 ~ 8278756 (+)
G50583 LOC108437602,LOC103398889 other downstream 272134 8342940 ~ 8344514 (+)
G50889 grid2,LOC107556295 other downstream 1572568 9643374 ~ 9782721 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other downstream 2052914 10123720 ~ 10130801 (+)

Expression


Co-expression Network