LOC103033636


Basic Information

Item Value
gene id LOC103033636
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 8243882 ~ 8244724 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231609.2
CTAGCAGAAGTCTTCCTCTTCTTGCTATCTGCATCCTCACTCGTTACACGCCCTACTGCAACAAGTCACGGACGGTCATGTCTGAGgcagccccagctccagcagctcctgctAAATCGCCAAAGCGGAGGTCAACGAAGGCCAAGAAGACCGGCCCCACAGTCTCCGACCTGGTTCTGAAGGTGGTGTCTGCGAGCAAGGAACGCAAGGGCATCTCTCTGGCTACTCTGAAGAAAGGCCTGTCTTCTTCCGGCTATGATGTGATCAAGAACAGCTTCCGTGTTCGACTGGCCGTCAGACGCCTGCTCACCAGCGGTCGGCTAACTCAGACCAAAGGCACTGGAGCATCTGGATCCTTCAAAATCGGAGAAAAGGCAGCAAAGAAGAAAACCGTCAAGAAAGCCAAGAAGCCTCGGGCCAAGAAAGTCAAGGCCAAGAAGACAAGGGCGAAGAAACCAGCCGGGGCCAAGAAGTCTCCAAAGAAGTCTTCTccaaagaagaagagaaagaccAAGAGCCCCAAAAAGAGCCCCAAGAAGGCCAAAATACCTGCAGCCAAGAAGACCAAGAGTCCCCGAAAGACGACACGCAGATCCAGAGCCAAAGCTCCAGCCAAACAGCAGTGAGTTCAAGCAACTGGACAGTGACTATTCTGgtacctgctgctgctgttgggtGACCATGTTTAGGAACTCTTGATGTGCTTGATTTGTgctctgtgcatgttttaaacCATATGGTTAGATTAGATAGTCTGGATTTACCTGTCATCTTTGCTTTGTAAACTAATGGCATTCTGAATGTCCAAGCTTTAATAAAAACTATGAtgtataaagaataaaa

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04640 Hematopoietic cell lineage
ko05144 Malaria

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231609.2 True 843 mRNA 0.49 1 8243882 8244724

Neighbor

gene id symbol gene type direction distance location
slc20a2 slc20a2,LOC107594502,LOC107724891,LOC107669617,LOC107711867,LOC107602837 coding upstream 67099 8109822 ~ 8176783 (+)
ercc6l2 LOC107724913,LOC107689281 coding upstream 173076 8051690 ~ 8070806 (+)
dock8 dock8 coding upstream 524889 7618199 ~ 7718993 (+)
lrif1 NA coding upstream 627899 7608880 ~ 7615983 (+)
apex2 NA coding upstream 636010 7603019 ~ 7607872 (+)
LOC103034161 LOC108437597,LOC108437601,LOC108265423 coding downstream 9844 8254568 ~ 8257952 (+)
LOC103035131 LOC108437597,LOC108437601 coding downstream 14879 8259603 ~ 8262730 (+)
LOC103034488 LOC108437599 coding downstream 19440 8264164 ~ 8269334 (+)
hsd17b4 hsd17b4 coding downstream 731494 8976218 ~ 8995752 (+)
sema6a sema6a,LOC106585847,LOC106580184 coding downstream 840314 9085038 ~ 9203129 (+)
G50565 NA non-coding upstream 40463 8202437 ~ 8203419 (+)
G50550 NA non-coding upstream 141595 8102075 ~ 8102287 (+)
G50535 NA non-coding upstream 197829 8045701 ~ 8046053 (+)
G50439 NA non-coding upstream 301134 7939601 ~ 7942748 (+)
G50258 NA non-coding upstream 1163741 7077233 ~ 7080141 (+)
G50580 NA non-coding downstream 57792 8302516 ~ 8302910 (+)
G50656 NA non-coding downstream 510921 8755645 ~ 8756009 (+)
G50770 NA non-coding downstream 700549 8945273 ~ 8946372 (+)
LOC107197475 NA non-coding downstream 760268 9004992 ~ 9006646 (+)
G50818 NA non-coding downstream 959292 9204016 ~ 9204217 (+)
G50568 NA other upstream 22720 8207342 ~ 8221162 (+)
c6h9orf3 NA other upstream 359824 7730684 ~ 7884058 (+)
trnae-cuc NA other upstream 1259621 6984190 ~ 6984261 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other upstream 1301904 6863356 ~ 6941978 (+)
G50063 NA other upstream 1867177 6371520 ~ 6376705 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other downstream 25524 8270248 ~ 8278756 (+)
G50583 LOC108437602,LOC103398889 other downstream 98216 8342940 ~ 8344514 (+)
G50889 grid2,LOC107556295 other downstream 1398650 9643374 ~ 9782721 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other downstream 1878996 10123720 ~ 10130801 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other downstream 2443161 10687885 ~ 10757255 (+)

Expression


Co-expression Network