LOC103034161 (LOC108437597,LOC108437601,LOC108265423)


Basic Information

Item Value
gene id LOC103034161
gene name LOC108437597,LOC108437601,LOC108265423
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 8254568 ~ 8257952 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231610.3
AGATTTATCATCCTAACCCACCACTGACTCACAGCAGTTCGACCTGACAGCCATGGGCTCAATAAGTATATCTCTGTTGGGTGTCTTTGCACTTCTCACATTCTCTGATCTTCATCCAATCAGTCGTCCTAACAATGGACTTCGCAAGTGCCGCCAAAACAGCAGTGGTCCAGCACTGGAGGTCCTCCCAGGTGGAGGCTGGGACAACCTGCGTAATCTGGACATGGGGAGAGTGATGAACATAAGTTATTCCCAGTGCCAGACCACTGAGGACGGGGTTTATCTTATTCCAGATGAGGTCTTTGTCATTCCACAGAAGGTGAGCAAGGTGGAGATGAATTCGGAGATCATCAGTTCATGGCTTGAACAGAAAAGCTCCACCTCAAGCTCCATTAATGCAGATGTGTCCTTCTTCTCCGTGGTCAATGCCAAGTTCTCCACTGAGAACCAACGCATGAAAACCCATCAAGTCAAAGGCAATTCTGTTACAGCACGGGTGCAGGTGCGTAACCATCTGTACACTGTGAAGGCTTATCCTGACTTCACTTTGGATTCACGCTTTGCCCGTCAGGCAGAGGAAATCGCAGACGCCATTGAGAACAACCAAACTCGCCATGCAGAATACCTGTCAGAGAAAATGGTGCTAGATTATGGCACGCACGTCATCACGAGTGTTGACACTGGTGCCACTTTGGTGGAAGAGGACTATTTGAAATCATCTTATGTTTCTGATGCACAGTCCTCTCAGTCCTCTGTCTCAGCCTCAGCTGGTGCCAACTTTTTTGACAAAGTTAAATTTGATATTGGCACTAAGGATTCACAAGGAACATCAGAAACACGTAACTACCAGGGTAACATTACTTACTCTATAACACTGAGTCATGGTGGGGCATTGTTTTATCCTGGCATTACTCTTCAGAAATGGCAGGAGAGTACTCTAAATAATCTGGTAGCTATTGACCGTAGTGGACTACCACTCCACTATTTCCTCAATCCATCAGTGTTTCCAGACCTCCCACTTCCAACAGTGAATAAACTAGCTGTCTCAGTGAGTCAGGCCATAGAACGCTACTATAAAGTTAATACTCACCCTGGATGTGTAAAACCAGATTCAAAAAATTTCAACTTTCAAGCCAATGTAGATGACGCTTCCTGTGAAGGCCCAAACACCAATCTTAGCTTTGGGGGTGTTTACCAGCAGTGCACTCCCTTGAATTCATATGGAGATGCAATCTGCCAGGAGCTTGCTTCAAAAAACCCAGCCACTGGCTCCTATTCCTGCCAGCAACCATACATCGCTACTCTATTGCGCTCTGAAACGCAGGAAAGACCATATGACCAGTATGTGTGCCATAGGCATTGTTATGGTTGTGGATTTCTTTGGCTTGACACCTGTTGTgaaaacatttgtggaaatgtGTACCATGTTCGGAGGGCACAGATTAAAACTTACTGGTGCGCCACTAATGGGGCAACTCCAGAATTCTCTGGATACCTCTTTGGGGGTCTATTTGGCCCCTCCTTACAAAACCCTTTAACCAAATCCAGATCTTGTCCTCCAAATTTCTTTACACAGACATTTTTGTCCAGTGGCTTTAAGATCTGTCTAAGCAATGACTACGAGGCAGCAACCAGATTCTCTGTACCTTTCGGGGGATTTTTTAGCTGCCAGTCGACCAACCAACTTGCAGGGAGTCAATCTCGCTGCCCACCGCAGTTCAGTCAACACCTTGTTGCCATAAGTGATGGGTGCCAAATACTTTTTTGTGTTCAGTCAGGCATTTTCACTGGAGGAGAGTTACTCCCTATCCGTCTGCCACCTTTCACAAGACCTCCAGTTATCAGTATGATAGCCACAAACACTGTGGCTGTGATGACCGAAGGCGATCAGGCCTGGGTGAGAGTCAAAGATACAAAATTGTGGAAGGTGGCAAAGCCTGAGGACATCACCAAAATGTCCCAAATATTTGACCACTCAACTCAGGCAGCAGGGAAAAAAGCTGGCATTGCCTTTGGTGTTCTTGCTCTGATTGCTCTCTTGGTGGCTGTTGCAGTGGTGGTGGTGAAAAAGAAGAGGCGAGTTTCTGGACTTGGAAAAGGCCAAAGCTATGAGGAAATTGAAAGTACAGAAGAAATTGAGAGTATTAGTGTGGCGAGTCCAGCACAACACGAGTCTGAGGTTGAGAGTGAGGGCCAAACTCAACCTCTCTTAGCATAATCACTTTTGctctaaaattgttttttaattttgaacATGTAAGCATTAAAATTTGTTTTAGCAACAATCAAGGTCTAATTTGTTACAATTTTCTAATACTTTTTTCTAATCTTTTTAATAAGAgaatttttgttacattttttgctTTACTCTATTTTTCTACAATAAAAATTATACAGAAAATA

Function

NR:

description
PREDICTED: macrophage-expressed gene 1 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231610.3 True 2403 mRNA 0.44 2 8254568 8257952

Neighbor

gene id symbol gene type direction distance location
LOC103033636 NA coding upstream 9844 8243882 ~ 8244724 (+)
slc20a2 slc20a2,LOC107594502,LOC107724891,LOC107669617,LOC107711867,LOC107602837 coding upstream 77785 8109822 ~ 8176783 (+)
ercc6l2 LOC107724913,LOC107689281 coding upstream 183762 8051690 ~ 8070806 (+)
dock8 dock8 coding upstream 535575 7618199 ~ 7718993 (+)
lrif1 NA coding upstream 638585 7608880 ~ 7615983 (+)
LOC103035131 LOC108437597,LOC108437601 coding downstream 1651 8259603 ~ 8262730 (+)
LOC103034488 LOC108437599 coding downstream 6212 8264164 ~ 8269334 (+)
hsd17b4 hsd17b4 coding downstream 718266 8976218 ~ 8995752 (+)
sema6a sema6a,LOC106585847,LOC106580184 coding downstream 827086 9085038 ~ 9203129 (+)
cdo1 cdo1,LOC102791980 coding downstream 1068748 9326700 ~ 9335342 (+)
G50565 NA non-coding upstream 51149 8202437 ~ 8203419 (+)
G50550 NA non-coding upstream 152281 8102075 ~ 8102287 (+)
G50535 NA non-coding upstream 208515 8045701 ~ 8046053 (+)
G50439 NA non-coding upstream 311820 7939601 ~ 7942748 (+)
G50258 NA non-coding upstream 1174427 7077233 ~ 7080141 (+)
G50580 NA non-coding downstream 44564 8302516 ~ 8302910 (+)
G50656 NA non-coding downstream 497693 8755645 ~ 8756009 (+)
G50770 NA non-coding downstream 687321 8945273 ~ 8946372 (+)
LOC107197475 NA non-coding downstream 747040 9004992 ~ 9006646 (+)
G50818 NA non-coding downstream 946064 9204016 ~ 9204217 (+)
G50568 NA other upstream 33406 8207342 ~ 8221162 (+)
c6h9orf3 NA other upstream 370510 7730684 ~ 7884058 (+)
trnae-cuc NA other upstream 1270307 6984190 ~ 6984261 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other upstream 1312590 6863356 ~ 6941978 (+)
G50063 NA other upstream 1877863 6371520 ~ 6376705 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other downstream 12296 8270248 ~ 8278756 (+)
G50583 LOC108437602,LOC103398889 other downstream 84988 8342940 ~ 8344514 (+)
G50889 grid2,LOC107556295 other downstream 1385422 9643374 ~ 9782721 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other downstream 1865768 10123720 ~ 10130801 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other downstream 2429933 10687885 ~ 10757255 (+)

Expression


Co-expression Network