LOC103034488 (LOC108437599)


Basic Information

Item Value
gene id LOC103034488
gene name LOC108437599
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 8264164 ~ 8269334 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231611.3
agtagcagtatttCTTCCTGTTCATACATTATGTCTGAGTATGAGTACACGTCCCAGCACTGGAAGCAAAACAGCATCCTAAAGTCTCTCTGTCTGAGCTCAAATATTTCCTGTCTGTGGAAATAGCACATAAAAGATGTCACTATGTCAACATGACTCTTCGCTCCTGCATAATCCAGCGTCTGTCCATGCCCACTCTCTCTGGCTTTAGAAAGTCTCGTGAGCACCCTCCCCCACCCTGCAGCTGGGAGGCACTGGACATCAAAACAAAACCAGTCAGCGGATAAAATCTGTCTGCTGCTGGAAAAAGTGCACCAAAAGGAAGACACTCCTTGCTTCAGATGCTTCAAAGCTTCCACTCCAGAAGACTTTTCAGCAATAGCTTTCCTAGAACAAAAGCCAAAGCTAGCACAGCAACGGTAACAGCAACGAAGCAATAATGGACCATCGGAAATGCATCCGTCTCCATTCATTCCTCTGCATCCCCTTAATTCTGACGGTCATCCATGACACTTTAGCCTGCCGTACAGGAACACAGCCAGAATGCGAGAAAGCTTCCTTCGTCCCTGGCCATAACCTGGCAGGTGAAGGCTTTGACGTGGTCAAAATGCGCCGTAAAGGTGCTTATGTTATAAACGTCAAATCCCACATGGTGGACAACTCCACCTGCACTGTGTGCAAGAACCGGTTCCAGGAGGGGCAGGTGCAAAAACTGCCCTCGGCAGTGCTGGACTGGCGTCCCTTCAGTCGCTGCAGCAAACAGCTCTCAAGTGCTCTCCACCATTCCATCGACTCCCTTATCAAAAGCTCATCAGCCCTCATCAACAATAACTGGGGAATGGACCTTAGAATAGAAGATCTGGGCAAGGTGATTCTGGGTGGGAGCCATTCAGATATAGCCAAGTTTTCTCAGTCGCAGAACATGATGGACAAAGCGACCTTTGCTCTTCATGAGCTCAGCTGCACATATTACAGTTACAGGGTAAAGGATCACCCAGAGCTCAGCACTGAATTCTCTAAACATATACTTCGACTGCCTAGAAGCTACGACGAGAAAACCAAATGCCTCTACCGGAAGACTATCAACACTTACGGCACCCACTACATTAGTCACGTTCACCTAGGAGGCCGCGTGAGGCGAGTCACAGCCTTTCGAACCTGCCTTGCAACCTTAAAGGGCTTTTCTGAATCAGAGATAAAGAACTGTTTGAATATCGAGTTAAAAATGAGTCTAGGGTTTCTTCCTGCAAATGCTTCTCTTTCAAACAAATGCTCAGATATCCTGAAGGACAACATGAGCATGGGCTTCTACCAGGGTTTTATGACGCACAAGACTGAGGTTTTGGGTGGCGAAAAGTACTTTCCAGACCTTGGACTTCATGAAAGTCCATCTGAGGCCTACACCAGATGGATGAGCAGCTTACGCGACAACCCAGATGTTATTTCATATTCCATTCTCCCACTACATCATCTCATAACTGACCCAGAGCTGAGTGCCAGTCTGAGGGAAGCAGTGACCGAGTACATAGAAGAGAATGTGCTGCCTGTGGAGCAGAAGCCAAACCAAGATTGCACCCCAGCCCCAAACCTGGACCACAACTGCTGCCCTCTCCGAGCAGGTCGTGGCACCTTGCGAGTGGCAGTGCAACGAGCTAACGGTCTGAAGGCAGACCTCTTCACTCGGACAGACGGCTACGTAAAAGTATGGTACGCTAACATGTACGAAGAGACTGAAGTGGTGATGGATGACAACAATCCGGAATGGAACATCAGTTACAACTTCGGTTCCATAGACTTTGGTCACGAGTTAACATTCGAGGTGTGGGACAGCGACGTGATGTACAATGACATGGTGGGAAGGTGTGTGGTCTATCCTGAACGTGGGATTCACTCACACAGCTGTAAACTAAAGAAAGGAGTCTTCTACTTCACCTACATTGCCACATGTGATGCTCACCTGACTGGTCATAGGTGTGGTCGGTACTCCCCAAAAGCATGATTGTCCTTTATCAGGCACTTAAAGATAGAGATCCctttaaacaaagaaagaaTGGAAAAGTTATTAAATGGATTATTGTAAAACTGCAACTACACACTTCAGTTTAAAGCACAATTGAAGGGAAGATAACTGATTCTTTGCAGTTTtcaacaaatgtatttttttccaacaCTAACAATTACTTTCTTTTCTAAGTTTTAAGATTTGTTGTAAATCTTTGGTCAGTTTCACACTCAGGGATTATGCCTGGTTGTCTTCCTTTCAATAGAAAATCTCCCTTTAGATATATCTGAAGAACTGTCCATTAGTGATGGATCTTGTAGTATTGTTAAATTTATGCACCATCATCCACCCTGCAgtacagtcatgtaaaaaatgttttttttccaaagatgGACATTTGATCTTCATTTAAACAgtaagaaattaaagtaatacaaataaaacttaTACTAAAAGTTATAATCAGGTGCAGCACATCATGGTCAGAAAGTCTTTTGGAGAAGGATGTAGAGGTTAAgaatatgttaaaaatgattAGAAATCAGTAATTTCaataacaaattattttaaaaggggataatatttaaaaaacagaaccACAAGTTTCATTTAAACACTGGATGCCTGGTAATGCAACCAGTAACTTACATGGTTGTAGAGGTACTGGAGAAGACTTGCATCAGTCCTCACCTCATTACATGTTGCAAACGTTACATGTAGTAGGGGAAGGACTAGAGTACTAAAgattgggttgggtaatt

Function

NR:

description
PREDICTED: perforin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231611.3 True 2763 mRNA 0.44 3 8264164 8269334

Neighbor

gene id symbol gene type direction distance location
LOC103035131 LOC108437597,LOC108437601 coding upstream 1434 8259603 ~ 8262730 (+)
LOC103034161 LOC108437597,LOC108437601,LOC108265423 coding upstream 6212 8254568 ~ 8257952 (+)
LOC103033636 NA coding upstream 19440 8243882 ~ 8244724 (+)
slc20a2 slc20a2,LOC107594502,LOC107724891,LOC107669617,LOC107711867,LOC107602837 coding upstream 87381 8109822 ~ 8176783 (+)
ercc6l2 LOC107724913,LOC107689281 coding upstream 193358 8051690 ~ 8070806 (+)
hsd17b4 hsd17b4 coding downstream 706884 8976218 ~ 8995752 (+)
sema6a sema6a,LOC106585847,LOC106580184 coding downstream 815704 9085038 ~ 9203129 (+)
cdo1 cdo1,LOC102791980 coding downstream 1057366 9326700 ~ 9335342 (+)
tmed7 tmed7,LOC103042236,LOC102200599,LOC101168626,LOC100701005 coding downstream 1076304 9345638 ~ 9351678 (+)
catsper3 NA coding downstream 1083739 9353073 ~ 9354864 (+)
G50565 NA non-coding upstream 60745 8202437 ~ 8203419 (+)
G50550 NA non-coding upstream 161877 8102075 ~ 8102287 (+)
G50535 NA non-coding upstream 218111 8045701 ~ 8046053 (+)
G50439 NA non-coding upstream 321416 7939601 ~ 7942748 (+)
G50258 NA non-coding upstream 1184023 7077233 ~ 7080141 (+)
G50580 NA non-coding downstream 33182 8302516 ~ 8302910 (+)
G50656 NA non-coding downstream 486311 8755645 ~ 8756009 (+)
G50770 NA non-coding downstream 675939 8945273 ~ 8946372 (+)
LOC107197475 NA non-coding downstream 735658 9004992 ~ 9006646 (+)
G50818 NA non-coding downstream 934682 9204016 ~ 9204217 (+)
G50568 NA other upstream 43002 8207342 ~ 8221162 (+)
c6h9orf3 NA other upstream 380106 7730684 ~ 7884058 (+)
trnae-cuc NA other upstream 1279903 6984190 ~ 6984261 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other upstream 1322186 6863356 ~ 6941978 (+)
G50063 NA other upstream 1887459 6371520 ~ 6376705 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other downstream 914 8270248 ~ 8278756 (+)
G50583 LOC108437602,LOC103398889 other downstream 73606 8342940 ~ 8344514 (+)
G50889 grid2,LOC107556295 other downstream 1374040 9643374 ~ 9782721 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other downstream 1854386 10123720 ~ 10130801 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other downstream 2418551 10687885 ~ 10757255 (+)

Expression


Co-expression Network