LOC103035131 (LOC108437597,LOC108437601)


Basic Information

Item Value
gene id LOC103035131
gene name LOC108437597,LOC108437601
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 8259603 ~ 8262730 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231613.2
CACACCTCTTACAGCACTTCTTCCTGACAGCCATGGGCTCAACAGGTCTCTCTCTGTTGGGTCTCTTTGCACTCATCAGTATCTCTGATCTTCATCCAGTCAGTCGTCCTCACAATGGACTTTGCGAGTGCCGCCAAAACAGCAGTACACCAGCACTGGAGGTCCTCCCAGGTGGAGGGTGGGACAACCTGCGTAATTTGGACATGGGGAGAGTGATGAACATGAGCTATTCCCAGTGCCAGACCACTGAGGACGGGGTCTATCTTATTCCAGATGAGGTCTTTGTCATTCCGCAGAAGGTGAGCAAGGTGGAGATGAACTCTGAGATCATCAGTTCATGGCTTGAACAGAGAAGCTCCACGTCAGGCTCCATTAATGCAGATGGATCGTTCTTCTCAGTCCTTAACTGCAAGTTCTCTGCTGAGAACCAACGCATGAAAACCCATCAAGTCAATTACAATTCTGTCACAGCACGGGTGCAGGTGCGTAACCATCTGTACACTGTGAAGGCTTATCCTGACTTCTCTTTGGATTCACGCTTTGCCCAGCAGGTAGAGGAAATTGCAGACGCTATTGAGAACAACCAAACTCGCCATGCAGAATACCTATCAGAGAAGCTGGTGCTAGATTATGGCACACATGTCATCACAAGTGTTGATGCTGGTGCCACTTTGGAAGAAGAGGACTATTTGAAATCATCTTATGTTTCTGATACACAGTCCTCTCAATCATCAGTCTCAGCCTCAGCTGGTGCCAACTTTTTCAACAAAGTTCAGTTTGATATTGGTAGTAAAGAATCACAAACTACATCTGAAACACGTAACTACCTGGGTAACGTTACTTACTCTATAACACTGAGTCATGGTGGAGCATTGTTTTATCCTGGCATTACTCTTCAGAAATGGCAGGAGAGTACTCTAAATAATCTGGTAGCTATTGACCGTAGTGGACTACCACTACACTATTTCCTCAATCCATCAGTGTTTTCAGACCTCCCACTTCCAACAGTGAATAAACTAGCTCTGTTAGTAAGTCAGGCCATAGAACGCTACTACAAGGTTAACACTCGTCCTGGATGTGTAAAACCAGATTCCAGAAATTTTGACTTCCAGGCCAATGTTGATGACGCTTCCTGTGAAGGCCCAAGCACCAATCTTAGCTTTGGGGGTGTTTACCAGCAGTGCACTCCCCTGACTCCAGACGGAGATGTAATCTGTCAGGAGCTTGCTTCAACAAACCCAGCCACTGGCTCCTATTCCTGCAAGCAACCATACATCGCTACTCTATTGCGCTCTGAAACACAGGAAAGACCATATGACCAGTATGTGTGCAATACGCATTGTCACGATTGTGGTTTTTTGGGACTATTCACCTGTTGTGATCAAGTCTGTGGAAATGTGTACCATGTTCGGCGTGCACAGATTAACACTTACTGGTGCGCTACTAATGGGGCAACTCCAGAATTCTCTGGATACCTCTTTGGGGGGATATTTGGCCCCTCCTTTCAAAACCCTTTAACCAAATCCAGATCTTGTCCTTCAAATTTCTTTGCTCAGACATTTTTGTCTAACGGCTTTAAAATATGTCTAAGCAGCGACTACGAGACAGCAACCAAATTTTCTGTACCTTTTGGAGGATTTTTTAGCTGCCAGTCAACCAATCTACTTGCAGGAGGTCAATCTCACTGCCCACCGCAGTTCAGTCAACACCTTGCTACCATAACTGATGGGTGCCAAATATTGTTCTGTGTTCAGTCAGGTATTTTTACGGGCGGAGAGTTAAAACCCATCCACCTGCCACCTTTCACAAGACCTCCAGTGATCAGTATATTAGCCACAAACACTGTGGCTGTGATGACCGAAGGCGATCAGGCCTGGGTGAGAGTCAAAGATACTAAAATGTGGAAGGTAGCAAAAACCGCAGACATCGCCAAAATGTCCCAAATTTTTGACAACTCCCCTCAGGCAGCAGGGAAAAAAGCTGGCATTGCCTTTGGTGTTCTTGCTCTGATTGCTCTTGTGGTGACAGTAGCAGTGGTAGTGGTGAAAAAGAAGAGGTGGGTTTCTGGGCTCAGAAGAGGCCGGGGCTATGAGGAGTTTCAAAGTAGAGCACAAATGGAGAGCAGTTTTGATGGCCCAGCAGAACAAGAGTCTCAAAGTCTGTCTCAAAGCCCAAGTCAACCTCTCTTAGCATAATGTCCCTGTCCTGGGAGAAAAGACGTTTTTTACTATCCTCTACTATCAAAAATCATctcattattgtttattttaaaatagcttACCGGCAAAGGACAATCACTATTGCCCACTACTGTTTTTCAATGATCCGAACTATATTCAAATTAATTGAGTGGTGGTTATCTCTTGGATATATTGGGTCTTTATGTTCTTTAGATATTAAGGTGAAatcatttgttttaatattgtaaagGCAATGGCAGTAATACATTAGCATAATTCACATTGTTCTCTCAGTTTCAGTCTAAAACTTTGTACAtaccttttttgtttgtttgattttaattataaagCAGTATTCTTTAAAATTGTAGCTGTCAACCATTCAAgtgtaattaaaatgaaatcaaataaaaatgttctaccATAAA

Function

NR:

description
PREDICTED: macrophage-expressed gene 1 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231613.2 True 2608 mRNA 0.44 2 8259603 8262730

Neighbor

gene id symbol gene type direction distance location
LOC103034161 LOC108437597,LOC108437601,LOC108265423 coding upstream 1651 8254568 ~ 8257952 (+)
LOC103033636 NA coding upstream 14879 8243882 ~ 8244724 (+)
slc20a2 slc20a2,LOC107594502,LOC107724891,LOC107669617,LOC107711867,LOC107602837 coding upstream 82820 8109822 ~ 8176783 (+)
ercc6l2 LOC107724913,LOC107689281 coding upstream 188797 8051690 ~ 8070806 (+)
dock8 dock8 coding upstream 540610 7618199 ~ 7718993 (+)
LOC103034488 LOC108437599 coding downstream 1434 8264164 ~ 8269334 (+)
hsd17b4 hsd17b4 coding downstream 713488 8976218 ~ 8995752 (+)
sema6a sema6a,LOC106585847,LOC106580184 coding downstream 822308 9085038 ~ 9203129 (+)
cdo1 cdo1,LOC102791980 coding downstream 1063970 9326700 ~ 9335342 (+)
tmed7 tmed7,LOC103042236,LOC102200599,LOC101168626,LOC100701005 coding downstream 1082908 9345638 ~ 9351678 (+)
G50565 NA non-coding upstream 56184 8202437 ~ 8203419 (+)
G50550 NA non-coding upstream 157316 8102075 ~ 8102287 (+)
G50535 NA non-coding upstream 213550 8045701 ~ 8046053 (+)
G50439 NA non-coding upstream 316855 7939601 ~ 7942748 (+)
G50258 NA non-coding upstream 1179462 7077233 ~ 7080141 (+)
G50580 NA non-coding downstream 39786 8302516 ~ 8302910 (+)
G50656 NA non-coding downstream 492915 8755645 ~ 8756009 (+)
G50770 NA non-coding downstream 682543 8945273 ~ 8946372 (+)
LOC107197475 NA non-coding downstream 742262 9004992 ~ 9006646 (+)
G50818 NA non-coding downstream 941286 9204016 ~ 9204217 (+)
G50568 NA other upstream 38441 8207342 ~ 8221162 (+)
c6h9orf3 NA other upstream 375545 7730684 ~ 7884058 (+)
trnae-cuc NA other upstream 1275342 6984190 ~ 6984261 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other upstream 1317625 6863356 ~ 6941978 (+)
G50063 NA other upstream 1882898 6371520 ~ 6376705 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other downstream 7518 8270248 ~ 8278756 (+)
G50583 LOC108437602,LOC103398889 other downstream 80210 8342940 ~ 8344514 (+)
G50889 grid2,LOC107556295 other downstream 1380644 9643374 ~ 9782721 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other downstream 1860990 10123720 ~ 10130801 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other downstream 2425155 10687885 ~ 10757255 (+)

Expression


Co-expression Network