dmrta2 (dmrta2,LOC107578325)


Basic Information

Item Value
gene id dmrta2
gene name dmrta2,LOC107578325
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 3172009 ~ 3175759 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231666.3
TGGAGAAAAGCGCGCAGGTGGACACAGTTGAAAAAACGCGACAGCCAATCAGATCGCCTCCTCGCGCTTTGGCCAATGACGGGCGCCACATTGTTGTCAAATTAGTGTAATGAAAGCGCAGGAGcaacaatagagagagagagagtgagggagggagtgtGTATCCACTGCAATCTCTCCTTGAGTTAGTTATAGTGTCTCACACTGAGGCCAAAGCTACACCTCTCTTACCTGCAGCTCGAGACTCGTcccaacttttttattttttattctctgtttttttctcgtCTGCAGTCGCGTTTTGATCCGTCTTCTTCTTTCAGCTCCAGGCGTCGATTAGGTAAGCGATGGACTGAAGCGCATGCAACAAGTTGAAGATTGATTACAGAGAAGGACTTTTAACGCGAATCTGATTGGATGCCCATGTAGTATTGTGTATTTACATCACTTCTCCGAACTTTATCCTACAGTCTAAGTCCATTTAGCTTCTTTAGTCAGCGCTCTTTTTAAAACCTCGCACAAGTGACCGCTCTATAAGGCCAGGTAGTCCTCATCATGGATCTTCGCCCGGAGATCCCTTCAGGCCAGGCTGGCTCGCAGGTCCACCCTTCAGCCGCCGCCGCTGCCGCAGCAGCAGCCGCCGCGGCCGCCTCCTCCATCCCCGTGTCAATGGCCAGTGGGCTACTTCGCGGGCCACCGCTGCTCCTACGCGCCGCTGAGAAGTACCCACGCACGCCCAAGTGCGCGCGCTGCCGCAACCATGGCGTCGTGTCGGCGCTCAAGGGCCACAAGCGCTACTGCCGCTGGAAAGACTGCATGTGCGCCAAGTGCACGCTCATCGCCGAGCGCCAGCGTGTCATGGCCGCACAGGTGGCACTGCGAAGACAGCAGGCCCAGGAGGAGAACGAAGCGCGtgagctgcagctgctgtaCGGCACTGCGGAGGGGCTCGCGCTCGCCGCCGCCAACGGCATCATTCCTCCGCGCCAAAGCTACGAGGTGCTCGGACCGGTGAGCAACGACAGCAGCACAGACAACATGCAGAAATTCGAGCTCTTTCCGAAGACTTCTCAACCGCCCTCTACAAAGCCCGCGCCCGGCTCCGCTGATTCCGACCCCCTGCCTGGCATGTCCTCCCCGGACGCGCGCCACGGCTCCGGTTCAGAGAACGGTGACGGTGAGTCCTTCATAAGCTCCCCAGCCGCCAAGGCCGCGAAGGACGGCGAGGACACGCCCCCCTCGGTCAGCCCGCTGGGCTCTGCCTCGGATTCGGGCGCATCCGACACGGACAAGGACGAGCCCTCCCCGGAGCCCTCGGCCGCCTCCGCGCGCCACATGAACGCCATCGACATCCTGACGCGCGTCTTCCCCACGCACAAGCGCAGCGTGCTCGAGCTCGTGCTGCAAGGCTGCGGGAAAGACGTGGTGCAGGCCATCGAGCAGATCCTCAACAACGGCGGCCACCACGCCAGAGCCTCCGAGGAGCCGTGGGTGCAGGAAAGAGCTCTGAGCGGCGCGCAGGCGAACCTGCTCTCCGcctcaaccaccaccaccacctcctccgCCGCCGGGGGTCCCAGGCCGCTGCTGGCCGGAGCCATGCAGCTCAGCAACCGCTCCGCCTTCTCTCCGCTGCAGCCCAACGGCGCCACGCACTTCGGCCCCGACGGGAGCGCTTACCCTCTCGGGGCACCGCTGGGCCTCAGCCCGCTGCGCCTCGCCTACTCAGCCCACAGCAGAGGCCTGGCCTTCATGAGCCCTTACTCCAGCACAGGCCTCATGCCCACACTGGGCTTCAGGCCGCCCATGGACTACGCCTTCACTGACTTAATCCGAGACAGGACTCTCTTACACAAGGAGCAGAGCTTCACGAATGGACTGTATGGGCCTCTGGTCAACAACACCCCAGAGAAACAGTGagggggtgtgggggggggtgctgCTCCAGGCTACAGAAATGATCTGTGGGGATAGGCCTGATCTGTAGACCATAAGATGGGGTTTATAGGCTGTAGACCTTATGGATAGTCTATGGAACAAGCATATTATGGGCAATAGAGCTGATCTGTAGACTGTAGTGTAAGGAACAGTTGATCTGTAGGCTATGGAACAGGCCTGTGGTCTATAAATCACATCTGTAGGCATGtactacaaaaaaagtaaaatgcatTGGCTTTTTACTTGATTATTttgtatagaaaaaaacaaataaaatctaattgaaCACAAGTAAGACGGTTTCAGATACTGTATTAATACAGCCTTATTTATCTGTGCGGACAGATTCACACATCATCAAGTAAATCCAATGCATTTTACAGTATAAGACATTACAACCAACAGAATGAATAACCTATCACATCTGTAGGCATGTACCAcaaaaaagcaaattaaaagGTTAAATGCATTGACTTTTACTTGATTAAAATGTagagaaataaacaaatcaaatatgattaaatacttgAATGAGAATTAGACAGTTTTGTTGCCTAgccttttctatttaatatGTGCGGACAGATTCACACATCAAGTAAATTCAATGCATTCACAGTATAAGACAAATCATCCAACAAAACGGATTTATAGGTTACAGATACAGAATAAGCCATCTACAAATCATGCCTACAGTCTAACGTGTCTGTAGATCTGTACCCCACAGATCAGGTCTGTAAACCAGTAAAGTTCCTGTAAAGTGTTCTCCCACGTGAAGTTTCCTGTACATAAATAAATTCTGCTTTAATCTCGCCGGAGAATAAAACACCAACACCGACAGACAGAGACTGACTCTACTCTTAAACATGGTTACCAGTTAAAGTTGTGATTTGCGCAAAGCTCCGCGCGCTGAGGAGACGAAGCTGTGTTTGCAGAGTAACCAGTATTTTCATGTAAATTGTGTATTTGAAATTCTTCACATGTTGGTCACAATCCTGTTAGAACATTTACAGAGCGGATTAAAGTCTCCGTGTTATAAGGGTGCAATTGATAGAACCATGTTCTCCatcgtttaaaaaaagaaacaagagactatactaacattattattattattattattattattatattattattattattattattattattattatattattattattataattattcgATCTTGATCACGTTGTCCTTTTAGCAGAGACTCTGTAAAAACGTGCCATGTTAAAGAACAAAGGccgagctgagctgagctgatgGTGAGGAAGATCTGGACTTCTGGACTTTGGGATTCTCTTTGTGCTGATGATGTTCcgatcaaatcaaatcaatttgTTACAAACCTACTCCATCTCACATGGGTCACACACTGGTGTAACACACATCTCTGTTCGTGGTGAATGACATCTCGCTTCACTGTTACTAGCTGTACATTTCTCTATGTGAATTTTGAtagaaataaatgttattttatactgaa

Function

symbol description
dmrta2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within corticotropin hormone secreting cell differentiation and telencephalon development. Predicted to be active in nucleus. Is expressed in central nervous system; ectoderm; endocrine system; and neural keel. Orthologous to human DMRTA2 (DMRT like family A2).

NR:

description
PREDICTED: doublesex- and mab-3-related transcription factor A2 isoform X2

GO:

id name namespace
GO:0021537 telencephalon development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19491 DMRT4_5, DMRTA; doublesex- and mab-3-related transcription factor 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231666.3 True 3430 mRNA 0.50 2 3172009 3175759

Neighbor

gene id symbol gene type direction distance location
rnf11 rnf11,rnf11b coding upstream 254578 2881685 ~ 2917431 (+)
ttc39a ttc39a,LOC107743871,LOC107599797,LOC107657886,LOC107752432 coding upstream 295581 2828935 ~ 2876428 (+)
eps15 eps15 coding upstream 362585 2747844 ~ 2809424 (+)
LOC103024869 calr,LOC108265943,LOC102308154,LOC106512241,LOC105936842,LOC108425050,LOC103464072 coding upstream 427557 2736304 ~ 2744452 (+)
tor3a tor3a,LOC108266023,LOC107548256,LOC107699619,LOC107743897,LOC107657890 coding upstream 437469 2725485 ~ 2734540 (+)
agbl4 agbl4,LOC107603279 coding downstream 343849 3519608 ~ 4194714 (+)
bend5 bend5,LOC106584333,LOC107707580 coding downstream 844694 4020453 ~ 4041702 (+)
bcar3 bcar3 coding downstream 1217942 4393701 ~ 4519665 (+)
pdpn NA coding downstream 1713949 4889708 ~ 4909202 (+)
LOC103034196 NA coding downstream 1754785 4930544 ~ 4943083 (+)
G49146 NA non-coding upstream 21421 2657196 ~ 3150588 (+)
G49185 NA non-coding upstream 71922 3096363 ~ 3100087 (+)
G49162 cdkn2c non-coding upstream 195980 2955254 ~ 2976029 (+)
G49164 NA non-coding upstream 302488 2867462 ~ 2869521 (+)
G49163 NA non-coding upstream 331226 2840312 ~ 2840783 (+)
G49351 NA non-coding downstream 57915 3233674 ~ 3234451 (+)
G49354 NA non-coding downstream 59312 3235071 ~ 3235275 (+)
G49355 NA non-coding downstream 60273 3236032 ~ 3236433 (+)
G49365 NA non-coding downstream 75623 3251382 ~ 3254354 (+)
G49366 NA non-coding downstream 87386 3263145 ~ 3263661 (+)
faf1 faf1,LOC107743872 other upstream 19959 2982846 ~ 3152050 (+)
G48714 NA other upstream 2360744 808155 ~ 811265 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 1024180 4199939 ~ 4239873 (+)
G49475 NA other downstream 1068769 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 2443400 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 2601293 5777052 ~ 5789265 (+)
G50063 NA other downstream 3195761 6371520 ~ 6376705 (+)

Expression


Co-expression Network