LOC103025499


Basic Information

Item Value
gene id LOC103025499
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 2603333 ~ 2616672 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231672.3
gatggtttgtgatcatccatcttcctcttgattatattccagaggttttttaatttagtaaaatcaaaggcTGAAAAAAGCGGGAGAATTGAGACACTCAGTCCTGCACAgagctgtagttctgtagtcaGCAGATAGCTAGCCTAGCCATGTACAGCTATTCATCCAGaataaaattTAACAGCGTGTTCCGCTACATCAGCTCCAGGGCATCCAGAAAATACTTTCCTATAATAGATGGTACTTTGCAGCAAGAACACAGACGTGTGTTTGAAGTGAATCTACAAAACAGCCAGATATGCCACCAAAGGTACCAGGAACACTGGGATAAGGTTTTAAAGGGAGGTGGTCAAAATGCCGTAACCCGACATACGCAGGGAAACCAGAAGATTTTGGCTCGAGAAAGAATTCGCATGCTACTGGATGATGAAGATTATCTAGAGCTTTCTCCTTTTGCTGGGCTGGGTTTGCCCTATGGAGACATCCCGGGAGCTGCCTGTCTCACAGGTGTAGGTAAAATAAAGGGACTGTGGTGTTTGTTTGCCGCTAACGATGCCACAGTGAAAGGAGGCACATGTTTCCCTATTACAGCAAAGAAACAGATCCGGGCACAAGAAGTGGCCATGCAGAATCGGCTGCCCTGTGTGTACCTGGGGGATAGTGCTGGTGTATTTATACCTCTTCAGGCAGACATCTTCCCTGATAAGAACCAAGGTGGAAGCATGTTTTACAATGAAGCTATAATGGCAGCAATGAATATTCCACAGGTGTCACTGGTGTGTGGGTCATGCACAGCCGGTGGAGCTTATACACCAACCATGGCAGAGGAGACTGTTATAGTTGACAGGATAGGGGCCATCTTTTTAGGTGGTCCACCCTTGGTTAAAGCTGCTACAGGTGAAGAGGTATCTTCTGAAGTACTCGGAGGTGCCGCTCTGCACTCAGAGGTGAGTGGCGTTGTGGATCATTTCGTTTCTGTGGAGAGTGAGGGATTCGAGTGCGTCAGGAACATCATCTCCACTCTCAACTTCAGCCTTCCAGAGGAGAACCCCACTGAGGTGGAGGAGCCACTGTACAGTGCTGAAGACCTTTTAGGCCTTGCTCCGCTGGACTACAGTAACAGCCTGGATGTCAGACTGATTTTGAGCCGACTGATTGATGGGAGTCGTTTCCAGGAGTTTAAGGCACGCTATGGGACCACTCTCCTCACTGGTTTTGCCAGAATCGAAGGACATCAAGTCGGCATCGTAGCAAACAATGGGGAGCTCACATACGAAGCTTGTCTGAAAGGAAGTCATTTCATTCAGCTGTGTAACCAGAGAGACACTCCACTTATCTTCCTGCAGAACACAGCCCCAGAGCCTGCACCCACTCTCTCAAAAGCACAGGCAGAGTCAAACTCTAACAGACTCAAATCTCAGGGATCCATGATGTCTGCTGTGGCCTGTGCCTCAGTTCCTAAGATCACTGTGGTGATCGGGGGCTGCCATGGTGCAGACAGCTACGCCATGtgtggacgGGCTTTTGAGCCCAACTTTCTGTTTTTGTGGCCCAATGCCAGGGTCTCAATCTTGGCCCCAGGGCACGCTGGTGCTGTGCTGCATGATGAAGAAGAGGATGCCCAGGAGATAAATGAGATacttaAAGAAGAAAGCTCAGCTTTCTTTTCATCGGGAAGACTGTGGGATGATGGAGTGATTCCTCCCCAGGACACTAGAAAGATGCTGGGGAAATGCATCAGCATCATGAACCAGCAGAAGTATCGGCTGCAGCAGGAGAAACAACACATTCCACTTCGGTTTTAAATGTACAAGCCTTCATCCAgaaatgtgttattattttgaATCTAAAATGTAACCTCTTAAAATGAATGTGGATTACTGTTCTTGCTTAATTTCCTATACATTCACAAAGAACACATTCTGAagcatatgcaataataaaattacattttaattttgttgca

Function

GO: NA

KEGG:

id description
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231672.3 True 1966 mRNA 0.47 13 2603333 2616672

Neighbor

gene id symbol gene type direction distance location
LOC103037045 NA coding upstream 719 2599242 ~ 2602614 (+)
LOC103035089 NA coding upstream 5697 2584545 ~ 2597636 (+)
LOC103026437 LOC108425081 coding upstream 20014 2527469 ~ 2583319 (+)
LOC103031418 tuba8l,LOC106567204,LOC105022333,LOC106572477,LOC103031418,LOC108265838,LOC108425079,LOC107711852,LOC107679810,LOC107594520 coding upstream 81914 2510144 ~ 2521419 (+)
klhl12 klhl12 coding upstream 97137 2478591 ~ 2506196 (+)
LOC107196890 osbpl9 coding downstream 169 2616841 ~ 2661456 (+)
osbpl9 osbpl9,LOC107657891 coding downstream 57544 2674216 ~ 2692784 (+)
tor3a tor3a,LOC108266023,LOC107548256,LOC107699619,LOC107743897,LOC107657890 coding downstream 108813 2725485 ~ 2734540 (+)
LOC103024869 calr,LOC108265943,LOC102308154,LOC106512241,LOC105936842,LOC108425050,LOC103464072 coding downstream 119632 2736304 ~ 2744452 (+)
eps15 eps15 coding downstream 131172 2747844 ~ 2809424 (+)
G49116 NA non-coding upstream 123962 2432799 ~ 2479371 (+)
G49117 NA non-coding upstream 173690 2428120 ~ 2429643 (+)
G49122 NA non-coding upstream 175422 2425130 ~ 2427911 (+)
G49121 NA non-coding upstream 198605 2404515 ~ 2404728 (+)
G49120 NA non-coding upstream 200356 2402683 ~ 2402977 (+)
G49146 NA non-coding downstream 40524 2657196 ~ 3150588 (+)
G49150 NA non-coding downstream 54145 2670817 ~ 2672813 (+)
G49151 NA non-coding downstream 64526 2681198 ~ 2681503 (+)
G49154 NA non-coding downstream 90351 2707023 ~ 2709154 (+)
LOC103026017 NA non-coding downstream 92032 2708704 ~ 2724228 (+)
G48714 NA other upstream 1792068 808155 ~ 811265 (+)
faf1 faf1,LOC107743872 other downstream 366174 2982846 ~ 3152050 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 1583267 4199939 ~ 4239873 (+)
G49475 NA other downstream 1627856 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 3002487 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 3160380 5777052 ~ 5789265 (+)

Expression


Co-expression Network