LOC103028158 (cebpb,LOC103028158,LOC107556312,LOC107669676,LOC107751442,LOC108265421)


Basic Information

Item Value
gene id LOC103028158
gene name cebpb,LOC103028158,LOC107556312,LOC107669676,LOC107751442,LOC108265421
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 2359922 ~ 2362224 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231679.3
CGAGAAGTTAGAAACATGGGAACTGACAGCAGCGCATTCCTTcgctcatacacactcactcaaacacactcaaacacacccacccaccGCTTTCAAAGCGTCGCTGACTGACGTTTCACGCACAGGTATTTatttacaggtgtgtgtgtaagtaaggTGGGCTACTGCACGCGCTGGTGACTTGAGATCCTCCTGCACGGCAGCACGCGAGGGCAGCAAGCCCCTCTACTTTCTCCGGCTCCTGGGTGTCTGAGCTCCATGGAAGTGGCCGGTATCTACGAACGGGACTGCTTCGCTTACCACGGCAGCAACTACGACGCCGACGCGTACCGACACCTGGCAGACGGCTCCATGACGAAGCTGGGAATCGCGGAGCACGAGAAGGCGATTGACATCAGCATCTACGTGGACACCCCTTTCAtgcaccatcaccatcaccagcaGCACCAACACCACCATCACCTGCACCAGCCGCCGCTGAGCCACGACCTGCTCTTCCCGGACTACGCGCACGAGGACGCCAAGGCGGTGGCGGTACCGGACAGTCGCGAGCTCGAGCGTGGTGGGGACCACGAGCACGCCGCGCGCCGCCTCGACTACGCCGAGCTGCACGAGACGCGGCTGGACGCCGTGCTGGGCGCGGACTTCTTGGGTCGCTGCTGGCGGGGAGGTGGCGGTGGAGGTGGAGGCGGCAGCGACGACGACGCCGCGCGCATGGACGGCAGCGGACCCTACCTGCGCACGACGTCGTTCCCCACGTCGGGAGGCGTCGGCATGAACGGTAGCCTTGGCGACGTGTCCGCCGCGTCCTCCTCGTGCTCAAGCCCACCGGGAACTCCCGCGCCACAGCCgctgtcatcatcatcatcgtcgtcGTCGACTCAGCTGAGCGGCGGCAAAGGCGGGAAGGCGGCGGGAGCGCCTCACGGTTCCAGCGGATCCAGCAAAGGCAAGAAGCGCCTGGACAAGGACAGCGACGAGTACCGGCAGCGGCGCGAGCGCAACAACCTGGCGGTGCGCAAAAGCCGCGATAAAGCCAAGATGCGCAACATGGAGACGCAGCACAAGGTGCTCGAGCTCGCCGCCGAGAACGACCGGCTGCAGAAGCGCGTGGAGCAGCTGTCGCGTGAGCTCGCCACGCTGCGCAACCTGCTCTCCGCCACGGGCCAGTGCTGACCCAGGCTGAGAGCGCGCGGGACTCTTTGAACTCGTTTGAGCTCGTTTGAACTGTTGTCTATGATCTATCGATCTGAACTGTTTTTGAAGAAATGAGAGATAAGAGCatttgattgttgattgttggtTGTTTTGCTCTCAGAAATGATCATAAAAAAGGCTACGAATTTATTGACACGATTAATATGATTATATCAAGagctagggatgcactgaaCTGCAGTTCATGAATGCTTCAGTATATATTAACATGTTTATTTGGCTTAGaagcacttaaaaaaattgactactcaaaaagtgttttgtgttggtgtgtcatctcatttttttattaacatctgggatgttaaaaacatgtttaaatcaaAATCCAAAGAAAAATAGTGATGGTACATTTAGGCTAGCTTGTccaattcattcattcattcattcattcattcattcattcattcatgcagTTAAAGAGACAAATATCCTATAAGAACAATAATGTTCAGAATAGCTCATTAATCTATTCAATTTATTCACTATTGGAATTGAACAAACTgcacaaatcaaacaaacaaattcttatatatattttttgttttgttttttgatacGTATTCGTGCTCGTGCTTAGTTTCGGTGCATCCCTAACCTAACGATCAGCCTGTGTTTACAAGCGCGAGTTTACAGCATGTGAAAGTGGAAGACTGCAGCGTGGACTGCTGGATTGCGCAACACCGACCGTCCTCGTGCTTGGggactcttcttcttttttatttcttttttttttttttaatgtcactttttggtgtcctgtttttttgtcGATGTGTGTctgtacagtatttttgtacgggtggaaaaaaatacaaaaatgtctaCTGTTTAATACtctgttatttaaaaattgcAATTTTAAATTGCAATTTTCTCCTgatctcttcttcttctttttgccCGTATCTGGGGCAGTGGCTGTCAGGGGAAGAGTTGTACTGCAGAGGTATGATGCAACTCATTGTAACAGTATTGGCAACGCGCTGAAGAAGAGTCTgctggagagaaagagggtaCACATGTTCTATTGcgattattataatataatattttattgcattaaaaGATTTTTACAACTTTGA

Function

symbol description
cebpb Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within regulation of DNA methylation; response to bacterium; and response to yeast. Predicted to be located in nucleus. Is expressed in several structures, including EVL; digestive system; macrophage; periderm; and yolk syncytial layer. Orthologous to human CEBPB (CCAAT enhancer binding protein beta).

NR:

description
CCAAT/enhancer-binding protein beta-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009617 response to bacterium biological_process
GO:0001878 response to yeast biological_process
GO:0044030 regulation of DNA methylation biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10048 CEBPB; CCAAT/enhancer binding protein (C/EBP), beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231679.3 True 2303 mRNA 0.50 1 2359922 2362224

Neighbor

gene id symbol gene type direction distance location
LOC103045867 mc3r,LOC103045867,LOC108425022,LOC107751459,LOC107711834,LOC107680356,LOC107669608 coding upstream 358752 1999574 ~ 2001170 (+)
LOC103027674 LOC108425035 coding upstream 573560 1772919 ~ 1786362 (+)
pym1 pym1,LOC102777374 coding upstream 595847 1760812 ~ 1764075 (+)
LOC103041629 sema3b,LOC107717529,LOC107556489,LOC107669651 coding upstream 898224 1415274 ~ 1461698 (+)
ajap1 ajap1 coding upstream 1882626 354036 ~ 477296 (+)
adipor1 adipor1,adipor1b,LOC108425077,LOC107751445,LOC107679819 coding downstream 103369 2465593 ~ 2474573 (+)
klhl12 klhl12 coding downstream 116367 2478591 ~ 2506196 (+)
LOC103031418 tuba8l,LOC106567204,LOC105022333,LOC106572477,LOC103031418,LOC108265838,LOC108425079,LOC107711852,LOC107679810,LOC107594520 coding downstream 147920 2510144 ~ 2521419 (+)
LOC103026437 LOC108425081 coding downstream 165245 2527469 ~ 2583319 (+)
LOC103035089 NA coding downstream 222321 2584545 ~ 2597636 (+)
G49112 NA non-coding upstream 17413 2340205 ~ 2342509 (+)
G49109 NA non-coding upstream 42237 2315391 ~ 2317685 (+)
G49102 NA non-coding upstream 44774 2268337 ~ 2315148 (+)
G49096 NA non-coding upstream 63563 2295667 ~ 2296359 (+)
G48991 NA non-coding upstream 160986 2198592 ~ 2198936 (+)
G49114 NA non-coding downstream 22202 2384426 ~ 2384635 (+)
G49118 NA non-coding downstream 28138 2390362 ~ 2390581 (+)
G49119 NA non-coding downstream 36258 2398482 ~ 2398829 (+)
G49120 NA non-coding downstream 40459 2402683 ~ 2402977 (+)
G49121 NA non-coding downstream 42291 2404515 ~ 2404728 (+)
G48714 NA other upstream 1548657 808155 ~ 811265 (+)
faf1 faf1,LOC107743872 other downstream 620622 2982846 ~ 3152050 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 1837715 4199939 ~ 4239873 (+)
G49475 NA other downstream 1882304 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 3256935 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 3414828 5777052 ~ 5789265 (+)

Expression


Co-expression Network