porcn (porcnl,LOC108437582,LOC108265978,LOC107549961)


Basic Information

Item Value
gene id porcn
gene name porcnl,LOC108437582,LOC108265978,LOC107549961
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 7556357 ~ 7571558 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231858.3
CTACATGCTGCCCGCGGTACTGCAGCCTACGCGCCCCCAGAATCAAGGTTGGTTGAATTTGCTGGCTGCTCCATTTCATCTGCTACTTTTCTGCTAGCTCTCTCAGTCCAGCAGATGTTTACAGCTGTTCCCCGGCATGGAGGAGATCCCTGTACGAGCTGGGCGGCTGATCTGAGTCCTGCCTGCTGTGGATCTTGGTTTCTGGGTCCTGTGTGTGGGTAAACCAGCCAGAGCTCTGCTGACAGCATTCTCTGCGGATAGCCATGGACTCATTTGGACGGCAGGAGTTTCTGCAGTTTCTGGCGGAGGGCTGCATTTTACCCACAGCTCAGCAGGGCCTGGAGCAGGTGTGGCAGCTTCTGCTCACCTGCCTGCTGTGTCGCATCATCTTCAGACTGAGTATCCCAGCTCCAATGAAGTACCTGTGTGCGATAACAGAAGGATTCTATgtgctgtttgttttctttgatgtGCACATGGTGTGGGTGATCATCCTCAGCCTTATCTGcttcctcatcctcttcctctgcCGAAACTCCAGCAGCCGAGGAGTGTTTCTCTCGCTCGCCATCCTCATCTACATGCTGATGGGAGAGCTGCATATGATAGATGCAGAGACTTGGCATAAGATGAGGGGCTCTCAGATGGTGGTGGCTATGAAGGCCATTTCTCTGGCCTTTGACCTGGACCGAGGAGCTGTGTCCTCATTCCCCTCAGTGCTGGAGTTTATGGGCTACATCTGCCATGTGGGAACGGTCATCTTTGGACCGTGGATTAGCTTTAGCCATTACAGAGATACTTTGGATGGACGCAAAATGAATGTTGGGTGGTTTTGGAAGATTGCATTAAGCTTCATGAGGAGTCAGATTTGCCTCGTCATTTCCACCTGCATCGCTCCCTACCTCTTCCCTTACTTCATCCCTGTCTACGGAGACGGGCTCTCTCGCAGGTGGCTTCATGCCTATGAGAACGCAGTGTCCTTTCACTTCAGTAATTACTTTGTTAGCTATCTGAGCGAGACTACCATTGTTCTGGCTGGGGCTGGGTTTACTGAACACAAAGACAACCTTAAATGGGACATCACAGTTGCCAGGCCACTCAATATTGAATTGCCCCGGTCGATGGTGGAAGTGGTCACATCCTGGAACCTGCCCATGTCCCGCTGGCTGAACAAATACGTCTTCAAGAGTGCTCTCAAACTTGGCACATTTCCAGCCATCTTGGTTACGTACACAGCCAGCGCTCTACTGCATGGCCTCAGCTTCCACCTGGGTGCTGTACTGTTGTCTCTGGGCTTTATCACCTATGTTGAGCATGTTCTAAGAAAAAGACTGGCAGCCATCTTCAGTGCCTGTATTCTGTCCAAACGCTGCTCCAGTGACTGTCATCATGAGAACAAAAAGGTTGTGTGGGTGTATGCCACAAACCTGTTCTTCAGTGCATTGTCCATTTTTCACCTGACATATCTGGGCTCTCTCTTTGACATGGATGCCGAGGATGAGAAGGTTCAGGGTTACATGGCAAGTCACACCATTCAAAAATGGTCAGAACTGAACTGGGCCAGCCACTGGGTGATGTTGGGATGTTGGGTCTTCTATTGGCTCATTTGAAGCTGGATGTGAAACTATGGATCAAGCTGAGGACCTTTTACACTCCTTGGATTGAGATCTTATCGGACTCAAAGCAAAAGCATATCTTCAGCATATCTACAGACTGTTTATACAGTGATCAAGCATTGCAGTTCCATCATTCCTGCTTTCACACCTTATACtgacactgttctacagatctGTAATCGTAACTACATTCCtccatgtactgtatgtgttagACCTGAGAAAATCTAGGTGAACATGTTGTTCTagtttttgttacttttttatacattaccaaaataacaataaagatatttattgttttctaaGAAAA
>XM_007231859.3
CTACATGCTGCCCGCGGTACTGCAGCCTACGCGCCCCCAGAATCAAGGTTGGTTGAATTTGCTGGCTGCTCCATTTCATCTGCTACTTTTCTGCTAGCTCTCTCAGTCCAGCAGATGTTTACAGCTGTTCCCCGGCATGGAGGAGATCCCTGTACGAGCTGGGCGGCTGATCTGAGTCCTGCCTGCTGTGGATCTTGGTTTCTGGGTCCTGTGTGTGGGTAAACCAGCCAGAGCTCTGCTGACAGCATTCTCTGCGGATAGCCATGGACTCATTTGGACGGCAGGAGTTTCTGCAGTTTCTGGCGGAGGGCTGCATTTTACCCACAGCTCAGCAGGGCCTGGAGCAGGTGTGGCAGCTTCTGCTCACCTGCCTGCTGTGTCGCATCATCTTCAGACTGAGTATCCCAGCTCCAATGAAGTACCTGTGTGCGATAACAGAAGGATTCTATgtgctgtttgttttctttgatgtGCACATGGTGTGGGTGATCATCCTCAGCCTTATCTGcttcctcatcctcttcctctgcCGAAACTCCAGCAGCCGAGGAGTGTTTCTCTCGCTCGCCATCCTCATCTACATGCTGATGGGAGAGCTGCATATGATAGATGCAGAGACTTGGCATAAGATGAGGGGCTCTCAGATGGTGGTGGCTATGAAGGCCATTTCTCTGGCCTTTGACCTGGACCGAGGAGCTGTGTCCTCATTCCCCTCAGTGCTGGAGTTTATGGGCTACATCTGCCATGTGGGAACGGTCATCTTTGGACCGTGGATTAGCTTTAGCCATTACAGAGATACTTTGGATGGACGCAAAATGAATGTTGGGTGGTTTTGGAAGATTGCATTAAGCTTCATGAGGAGTCAGATTTGCCTCGTCATTTCCACCTGCATCGCTCCCTACCTCTTCCCTTACTTCATCCCTGTCTACGGAGACGGGCTCTCTCGCAGGTGGCTTCATGCCTATGAGAACGCAGTGTCCTTTCACTTCAGTAATTACTTTGTTAGCTATCTGAGCGAGACTACCATTGTTCTGGCTGGGGCTGGGTTTACTGAACACAAAGACAACCTTAAATGGGACATCACAGTTGCCAGGCCACTCAATATTGAATTGCCCCGGTCGATGGTGGAAGTGGTCACATCCTGGAACCTGCCCATGTCCCGCTGGCTGAACAAATACGTCTTCAAGAGTGCTCTCAAACTTGGCACATTTCCAGCCATCTTGGTTACGTACACAGCCAGCGCTCTACTGCATGGCCTCAGCTTCCACCTGGGTGCTGTACTGTTGTCTCTGGGCTTTATCACCTATGTTGAGCATGTTCTAAGAAAAAGACTGGCAGCCATCTTCAGTGCCTGTATTCTGTCCAAACGCTGCTCCAGTGACTGTCATCATGAGAACAAAAAGGTTGTGTGGGTGTATGCCACAAACCTGTTCTTCAGTGCATTGTCCATTTTTCACCTGACATATCTGGGCTCTCTCTTTGACATGGATGCCGAGGATGAGAAGGGTTACATGGCAAGTCACACCATTCAAAAATGGTCAGAACTGAACTGGGCCAGCCACTGGGTGATGTTGGGATGTTGGGTCTTCTATTGGCTCATTTGAAGCTGGATGTGAAACTATGGATCAAGCTGAGGACCTTTTACACTCCTTGGATTGAGATCTTATCGGACTCAAAGCAAAAGCATATCTTCAGCATATCTACAGACTGTTTATACAGTGATCAAGCATTGCAGTTCCATCATTCCTGCTTTCACACCTTATACtgacactgttctacagatctGTAATCGTAACTACATTCCtccatgtactgtatgtgttagACCTGAGAAAATCTAGGTGAACATGTTGTTCTagtttttgttacttttttatacattaccaaaataacaataaagatatttattgttttctaaGAAAA

Function

symbol description
porcnl Predicted to enable Wnt-protein binding activity and palmitoleoyltransferase activity. Predicted to be involved in several processes, including Wnt protein secretion; canonical Wnt signaling pathway; and protein palmitoylation. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum and membrane. Is expressed in brain.

NR:

description
PREDICTED: protein-serine O-palmitoleoyltransferase porcupine-like isoform X2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K00181 PORCN; O-palmitoleoyl transferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231858.3 True 1929 mRNA 0.48 14 7556357 7571558
XM_007231859.3 False 1923 mRNA 0.48 14 7556357 7571558

Neighbor

gene id symbol gene type direction distance location
LOC103033322 LOC108437580,LOC107731173,LOC108266008 coding upstream 70613 7350669 ~ 7485744 (+)
LOC103033640 LOC108437579,LOC108265805,LOC107731248 coding upstream 219524 7242125 ~ 7336833 (+)
LOC103034603 NA coding upstream 425776 7123848 ~ 7130581 (+)
LOC103037743 LOC108437573,LOC107549481,LOC107668067,LOC107731205,LOC107745762 coding upstream 516721 7026649 ~ 7039636 (+)
LOC103035560 NA coding upstream 595725 6941690 ~ 6960632 (+)
csde1 csde1 coding downstream 2024 7573582 ~ 7596577 (+)
apex2 NA coding downstream 31461 7603019 ~ 7607872 (+)
lrif1 NA coding downstream 37322 7608880 ~ 7615983 (+)
dock8 dock8 coding downstream 46641 7618199 ~ 7718993 (+)
ercc6l2 LOC107724913,LOC107689281 coding downstream 480132 8051690 ~ 8070806 (+)
G50227 NA non-coding upstream 474011 7003089 ~ 7082346 (+)
G50258 NA non-coding upstream 476216 7077233 ~ 7080141 (+)
G50253 NA non-coding upstream 483871 7066875 ~ 7072486 (+)
G50224 LOC108412504 non-coding upstream 560163 6985536 ~ 6996194 (+)
G50197 LOC108442380,LOC105898899,LOC107667993,LOC107549944,LOC108265139,LOC105418848 non-coding upstream 764660 6788872 ~ 6791697 (+)
G50439 NA non-coding downstream 368043 7939601 ~ 7942748 (+)
G50535 NA non-coding downstream 474143 8045701 ~ 8046053 (+)
G50550 NA non-coding downstream 530517 8102075 ~ 8102287 (+)
G50565 NA non-coding downstream 630879 8202437 ~ 8203419 (+)
G50580 NA non-coding downstream 730958 8302516 ~ 8302910 (+)
trnae-cuc NA other upstream 572096 6984190 ~ 6984261 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other upstream 614379 6863356 ~ 6941978 (+)
G50063 NA other upstream 1179652 6371520 ~ 6376705 (+)
LOC103023397 NA other upstream 1767092 5777052 ~ 5789265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 1928905 5619159 ~ 5627452 (+)
c6h9orf3 NA other downstream 159126 7730684 ~ 7884058 (+)
G50568 NA other downstream 635784 8207342 ~ 8221162 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other downstream 698690 8270248 ~ 8278756 (+)
G50583 LOC108437602,LOC103398889 other downstream 771382 8342940 ~ 8344514 (+)
G50889 grid2,LOC107556295 other downstream 2071816 9643374 ~ 9782721 (+)

Expression


Co-expression Network