apex2



Basic Information


Item Value
gene id apex2
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 7603019 ~ 7607872 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_007231872.3
GCGAGAGTTGGTGCGCGCGATCCCGAGCTGTGTGGTAATGGTGGCGCGGGGACGCTGTCAGCCGCTCTGAGACAGATATGAAGATTATTACCTGGAATATAAACGGAATCAGGAGTTTTAAATATGGCATTAAGAAGACGCTGGACTCGTTTAACGCTGATATTATCTGTGTTCAGGAGACGAAGGTCACGCGGGATCTGCTGGATGAGAGGACTGCAGTAGTGGATGGATATAATTCCTACTTCAGCTTCAGCAGAGGACGCAGTGGATACTCAGGAGTCGCAACCTTCTGTAAAGACAGTGCTACACCATTCGCTGCTGAAGAAGGACTGACTGGGCTTCTTGTCAACAATGGAGAGGCTGTTGGATGCTATGGGGACCAGACTGCATTCTCCACTGAAGAGTTACAGTCACTAGATGGTGAAGGACGGGCTGTCATCACTCAGCATAAATTAATGGGAGCAGAAGACCCAGAGACACTCACTGTCATTAATGTGTACTGCCCACGTGCGGATCCAGAAAAGCCAGAGAGGAAGCTCTTCAAGCTGCAGTTCTACAGGCTCCTACAGAGTCGAGCAGAGGCCATTGTGGGGTCTGGAAGTCATGTGATCATTCTGGGGGATATCAACACATCTCATCGGCCTATAGATCACTGTGACCCAGACGATGTGGATAACTTTGAGAAGAATCCAGGCAGGAAGTGGCTGAACAGTTTTCTGTATGGGTCATTGGAAAATGGAACAGATGATGAAGAGGATGAAGAGAAGGCAGATTCAGAGACCTTCCAGAAATTTGTTCCTGGTGGTAAATTTGTTGACACCTTCCGACATTTCCATCCAACACGTGTCGGTGCCTTCACGTGCTGGTCTACTCTTACCGGTGCCAGACAGACCAACTACGGCACACGCATTGACTACATCTTTGCCAGTCGTTCGCTGGTGGAGAAAAGTTTGCAGAATGCAGATATCATGCCAGAAGTGGAGGGTTCTGATCACTGTCCTGTGTGGGCACAGCTAAGCTGTACCCTTGTGCCCAGTCCCAGGTGTCCATCTCTGTGCACACGCTACATGCCAGAGTTCGTTGGCAGGCAGCAGAAACTTTCTAGCTTTCTTGTTAAAGTTTCTGAGCAAAAAGCTGCTTTCAGAGACAATACAGAGAACCTACCTGGATCTCAAGAAGCTGGGGAGGTGCGTGAGAATGTGAGTCCTGAAGCAGCAGGCTTGCAGGGAAATGCTGGGAGAAAAAGGCCTTCAAATGGACCTCCAGAGACCTCCACTTCTAAAGGGAAGAAGAGTAAATCTGTTAAAACAGCAGCTAAACCTCAGGGCAGCCTTTTATCCTTCTTTAAACCTAAACCAACCCCTGAAGTACCTTCCAGCCATAGCATGAGGCCAAGTCCAAatcctgctgctaactgcaTTGACAGCAGCTCAGAGATTCACAAAACTGAAGATGACACTGAATACAGCAAACTCACAGAGCAGCTCACAAATAAGGATAATGAAGAAAAATCCAGGAACTCAAAGACTATTACTGGTGGACCAAGTTCTCAGGAAAGTATCCAAAGCAATGGAACATCTGATCATGAAACAACAAACTCCAAGAAAGGCTCTGACTTTTGGAAATCAGTTTTTCATGGACCTCCCCAGCCGCCACTGTGCAAGGTACACAAAGAGCCCTGTATTCTTCGGACTGTGAAAAAAGCAGGGCCAACTTTAGGCCGGCAGTTCTTTGTGTGCGCTCGTCCTCAAGGCCACACGTCCAATCCAGAGGCTCGTTGTAATTTCTTTGCCTGGGTGGATAAAAGCAGATAAAAACCCAAGTGTTTTTATGTACTAATTATGTCTATATATCAAAAAGTGGTACTACAACagtgtatgtttgtatatattttttgtatattcttgtactactacagtgttaaaattgtttg

Function


NR:

description
DNA-(apurinic or apyrimidinic site) lyase 2

GO:

id name namespace
GO:0005488 binding molecular_function
GO:0004518 nuclease activity molecular_function

KEGG:

id description
K10772 APEX2; AP endonuclease 2

RNA


RNA id representative length rna type GC content exon number start site end site
XM_007231872.3 True 1933 mRNA 0.47 6 7603019 7607872

Neighbor


gene id symbol gene type direction distance location
csde1 csde1 coding upstream 6442 7573582 ~ 7596577 (+)
porcn porcnl,LOC108437582,LOC108265978,LOC107549961 coding upstream 31461 7556357 ~ 7571558 (+)
LOC103033322 LOC108437580,LOC107731173,LOC108266008 coding upstream 117275 7350669 ~ 7485744 (+)
LOC103033640 LOC108437579,LOC108265805,LOC107731248 coding upstream 266186 7242125 ~ 7336833 (+)
LOC103034603 NA coding upstream 472438 7123848 ~ 7130581 (+)
lrif1 NA coding downstream 1008 7608880 ~ 7615983 (+)
dock8 dock8 coding downstream 10327 7618199 ~ 7718993 (+)
ercc6l2 LOC107724913,LOC107689281 coding downstream 443818 8051690 ~ 8070806 (+)
slc20a2 slc20a2,LOC107594502,LOC107724891,LOC107669617,LOC107711867,LOC107602837 coding downstream 501950 8109822 ~ 8176783 (+)
LOC103033636 NA coding downstream 636010 8243882 ~ 8244724 (+)
G50227 NA non-coding upstream 520673 7003089 ~ 7082346 (+)
G50258 NA non-coding upstream 522878 7077233 ~ 7080141 (+)
G50253 NA non-coding upstream 530533 7066875 ~ 7072486 (+)
G50224 LOC108412504 non-coding upstream 606825 6985536 ~ 6996194 (+)
G50197 LOC108442380,LOC105898899,LOC107667993,LOC107549944,LOC108265139,LOC105418848 non-coding upstream 811322 6788872 ~ 6791697 (+)
G50439 NA non-coding downstream 331729 7939601 ~ 7942748 (+)
G50535 NA non-coding downstream 437829 8045701 ~ 8046053 (+)
G50550 NA non-coding downstream 494203 8102075 ~ 8102287 (+)
G50565 NA non-coding downstream 594565 8202437 ~ 8203419 (+)
G50580 NA non-coding downstream 694644 8302516 ~ 8302910 (+)
trnae-cuc NA other upstream 618758 6984190 ~ 6984261 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other upstream 661041 6863356 ~ 6941978 (+)
G50063 NA other upstream 1226314 6371520 ~ 6376705 (+)
LOC103023397 NA other upstream 1813754 5777052 ~ 5789265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 1975567 5619159 ~ 5627452 (+)
c6h9orf3 NA other downstream 122812 7730684 ~ 7884058 (+)
G50568 NA other downstream 599470 8207342 ~ 8221162 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other downstream 662376 8270248 ~ 8278756 (+)
G50583 LOC108437602,LOC103398889 other downstream 735068 8342940 ~ 8344514 (+)
G50889 grid2,LOC107556295 other downstream 2035502 9643374 ~ 9782721 (+)

Expression



Co-expression Network