lrif1


Basic Information

Item Value
gene id lrif1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 7608880 ~ 7615983 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231873.3
catttttaactgatttactgaaataaagtcactttttaatgagattttatatatatttgtttggcTGCACATGTATAATAAAGCTGTAGTGTGGAAATGCGGGGTTTGAGACGCAGCCTGGGCTTTTATTTAAGAACGGCGCAGTTTCCGCTCTCCGCCGCTGAGTGTCCTGTATCTTTCTTCACTACCGAATACAGCGCTCATTCTGAGGCTCAGAGACCTTTATTAAACTCTCTCTTCAGTGGCATGTTTTCTAAAACTCAGAATGGAGAATGGAACGGGAGTTTACTACCAAGCAATGCCGGCTGTTGGACCTGATGGGAAAAATGTGATGAAGTTGATACCAGTTCAGAAAGTGAATGGGAAATTTGTTCAGACACACGTCATTTCTGCTAGGACTGACCATCAACCTCAAGTTCATCATCATCCTACTCTCTTATCTCCTGTGTCTTTACCACATAATAACCTCCCAACACTTCAGCCAACAGCAGATGGACGCTTCATTTTGAAAATGCCTCCGGACAGCAACACTTTATTGAACCCTTTGAAAAGTCAACTGCAGGGAACTAAtgacttattaaaaaacactttaaatcagGTACGTCCCCCACTAGTCGCTCCAACACTGACACAACATGCTTTGCAGTTACCCCTGCAGAGTAATAGCAAACCTGTTACTGTGATAAGCAGCCCACAACAACCTGTGTCTGGTAAATCGCCCATTTTTTCCAGTGGACATTACCTTCAGATCCCTCCTAATGCCACCGTAAGGACTCTCCCTGCCTCTGCACTTCCACAGTCCATCAAAAGCCAAATTTGTACCTCTTTAAATGCACCAAACAACTCTGCAAATGGATTATCAACAGTTCTGTACGTATCTCCAGTCAATTCCTTGAAACTAGGTCCCAGTCAGCAGGTACCTGGTTTAATGAAAGAGACTGTAACCACTCAGAGCTCGACTCCAATGCCTACCATAAGCTCTGTGAAATCTCTGAATGTGACTTCTACATCAGGTCCCAAGCCTGATGAAGGAGCCAGCACCCCAATGAGGTGGGTGGTCCAAGAAGGGACAGGAAGCACTGCGCCATTCCTTATACCGGTCACTTCACCTAGCATGACAACGGACATCATTAAAGCAGTCAAACAAATGgaaacagagaaacaaatgAATCAAGGTACAGCAGGAAAACGCGCATCTACTTCTTCTACTGCCATTCAGGAAAAGATCAGTCCAGGAAAGGACAGTGCCCTTGTAATGTGCAATGGAAAGGTCTACTTTGTGGCTAAAAAAAGTTCTGAGAACACCAAGGACGTGATCTCTGGAGCAGGAAGCAATCTGAACGTCAGAAATTTTGTCCAGCCCCCCAGTGTCTCAAATACAGTTCCAAAGCAAGACTCTGTACAAACTCCATCCAGTAAAAATCCAAATGAAATTATTGACCTGTGTGATGACGAAGAAGAGAGCTCACCAAGCACAGCTTTAAGTACATTATCTGTACCTAATGAAAATGCAAGTGAGAATGACGAAGACTCCAATGTCATATTTGTGTCATACATCCCACCAAAATCAGAAACTGACACCAGCACAAAAGCTGCAGACACATCTTCACAGCACAATTTTGAGAAAGATAAAGCCAGCCCTGATTGTGATACACGGAACATTACAAACAGCCCTGTCATTGACCTTGACGTCAGCAGATGTGAAGATCATGCAGCTGCTGATAAACGAGTGAACGGAGGGGGAGCTGTGTCAGAACAGTTAGAGGAAGTCTGCAAGGAAGTCATCGAAACGATTTCAGTGGACTCAGGTATCCAGTTCAATGAAATGTCCTGGGAAGAACCAGCTTTGGAAGAAGTACAGCAACAAAAGAGTGATTCTGAGCTCAGAAAGATTTTTGGGATTATGTCTGATGTACGAATTTGCCTGCAGAAGCTAAAGGAAGCTAAAGCGGCAAGTCCACAACCAGAAAGAAGGACCGTTAACAAACGCACTTTAGAGGGTATccggaaactgattcaggactCACAGATACAGCAAAAAGTCAAAAAGCTGATGGATGCACAGGTACAGGTACCCAAAGGAAAAAATGGCCCAGAAGATGCCAAAAGAAAACGGCTGGCAGGGCCTGAACAGAAGACATGCTTGGACACCTCTGTATCCAAGGATGTAGTAAAAGGTCACAATGAGATGCAAAGCATGTCCACAGATGCCTGTACAGACAGCAAAGTGTTGCTGTATTGTCAGGGCTCAGATGAGGAAACTCCCACTGAAAATCTCATTGAGCCACTCtgttcttcctcatcttcatttCAGTCTCAACAAACTCAAACTGGAACATGTGGTACTAACGGGAAAGCTTGTATGGCTGTATCAAGGAGGACTCCAGCTCGACAGAGTAAAGGGAATGGGAGAGTGTGCACGGCATGTCCTTGTGGAACTAAGGTTGGAGCCATTGCTGCAATTTCACCATTTAAATCTCTTGAAAAGCCAAATAGGCCTGCTGTCATTGACCCACCTAAACAGGCGAGTGTTTTAACAGGGTCAAACAGAGATTGCAAAAATGTTGGGAAGGTACTCAACAAGCCAGTTACAAGCCCACCAAAAAGCAGTGTGGCATCTGGGAAGTCTGGAGACGAAAAGTTACATAGCACTGAATTGCACACAAAGCCCGCTAAAGGTCTGAATCCTTCGTCTTTGTCCATGCAACATGATGTTAGTCACTCAAGCTCCAGCTCAGTTAGTTCAGAAGAAGCTGcaagcagcagcaccagcagcaacAACGCTTTCATTGAATTGTACTCTTCTGTAATGCTGGACCCTGAGGAATTAAAGCGCCAGGAGCGAATCAAACGCCTCAAAGTCCTTCTGAAGGAAAAAGAAGCAGCCCTGGAGAAGTTGCGGCAGAGCATGTGAAAAAGCTTCACACATCTGAATTTATCTTTGGTGGCTTGATCTTGATTGGAAAAGCCATCAACTCGTGAGGCAGCTCTCagtttatatgaaaaaaaaaaaaaaaaaaagaaatcttgtTCTTCAttctatgtaaaatatataaatactttttaatttgtttatttccaATATGCAATTTCATTGTCTAGtgcattgtgtatttttaagtttgtatttaatgcttttgtttgtcatttttgtTGTAGTGTCAGTCGGTCAGTCAGATTGCCAGACCTAGGTCAAGACCTGCACTTAAAGAAATTCAATTCAGTCCACAAATAGGCTTAAATTAAAAGAAGTGGACTGATctactttatttaagtattgtAAAGTATTCTTTAGGGATCTCGAGTTCTAATATTTCTTAATATTTAGCAATGGTTACTTAAGACctatgtgaaataaaaaataaaatgatattttcAAATATGTCAGTTTTGATAATACCACTTTAACCTGCCCTTCAACACTTATCTATTGAGAACTGTAATCTGCAGTTTCAGACgttcatttaataaatgaaaaaatgta
>XM_007231874.3
tcacatttttaactgatttactgaaataaagtcactttttaatgagattttatatatatttgtttggcTGCACATGTATAATAAAGCTGTAGTGTGGAAATGCGGGGTTTGAGACGCAGCCTGGGCTTTTATTTAAGAACGGCGCAGTTTCCGCTCTCCGCCGCTGAGTGTCCTGTATCTTTCTTCACTACCGAATACAGCGCTCATTCTGAGGCTCAGAGACCTTTATTAAACTCTCTCTTCAGTGGCATGTTTTCTAAAACTCAGAATGGAGAATGGAACGGGAGTTTACTACCAAGCAATGCCGGCTGTTGGACCTGATGGGAAAAATGTGATGAAGTTGATACCAGTTCAGAAAGTGAATGGGAAATTTGTTCAGACACACGTCATTTCTGCTAGGACTGACCATCAACCTCAAGTTCATCATCATCCTACTCTCTTATCTCCTGTGTCTTTACCACATAATAACCTCCCAACACTTCAGCCAACAGCAGATGGACGCTTCATTTTGAAAATGCCTCCGGACAGCAACACTTTATTGAACCCTTTGAAAAGTCAACTGCAGGGAACTAAtgacttattaaaaaacactttaaatcagGTACGTCCCCCACTAGTCGCTCCAACACTGACACAACATGCTTTGCAGTTACCCCTGCAGAGTAATAGCAAACCTGTTACTGTGATAAGCAGCCCACAACAACCTGTGTCTGGTAAATCGCCCATTTTTTCCAGTGGACATTACCTTCAGATCCCTCCTAATGCCACCGTAAGGACTCTCCCTGCCTCTGCACTTCCACAGTCCATCAAAAGCCAAATTTGTACCTCTTTAAATGCACCAAACAACTCTGCAAATGGATTATCAACAGTTCTGTACGTATCTCCAGTCAATTCCTTGAAACTAGGTCCCAGTCAGCAGGTACCTGGTTTAATGAAAGAGACTGTAACCACTCAGAGCTCGACTCCAATGCCTACCATAAGCTCTGTGAAATCTCTGAATGTGACTTCTACATCAGGTCCCAAGCCTGATGAAGGAGCCAGCACCCCAATGAGGTGGGTGGTCCAAGAAGGGACAGGAAGCACTGCGCCATTCCTTATACCGGTCACTTCACCTAGCATGACAACGGACATCATTAAAGCAGTCAAACAAATGgaaacagagaaacaaatgAATCAAGGTACAGCAGGAAAACGCGCATCTACTTCTTCTACTGCCATTCAGGAAAAGATCAGTCCAGGAAAGGACAGTGCCCTTGTAATGTGCAATGGAAAGGTCTACTTTGTGGCTAAAAAAAGTTCTGAGAACACCAAGGACGTGATCTCTGGAGCAGGAAGCAATCTGAACGTCAGAAATTTTGTCCAGCCCCCCAGTGTCTCAAATACAGTTCCAAAGCAAGACTCTGTACAAACTCCATCCAGTAAAAATCCAAATGAAATTATTGACCTGTGTGATGACGAAGAAGAGAGCTCACCAAGCACAGCTTTAAGTACATTATCTGTACCTAATGAAAATGCAAGTGAGAATGACGAAGACTCCAATGTCATATTTGTGTCATACATCCCACCAAAATCAGAAACTGACACCAGCACAAAAGCTGCAGACACATCTTCACAGCACAATTTTGAGAAAGATAAAGCCAGCCCTGATTGTGATACACGGAACATTACAAACAGCCCTGTCATTGACCTTGACGTCAGCAGATGTGAAGATCATGCAGCTGCTGATAAACGAGTGAACGGAGGGGGAGCTGTGTCAGAACAGTTAGAGGAAGTCTGCAAGGAAGTCATCGAAACGTCCTGGGAAGAACCAGCTTTGGAAGAAGTACAGCAACAAAAGAGTGATTCTGAGCTCAGAAAGATTTTTGGGATTATGTCTGATGTACGAATTTGCCTGCAGAAGCTAAAGGAAGCTAAAGCGGCAAGTCCACAACCAGAAAGAAGGACCGTTAACAAACGCACTTTAGAGGGTATccggaaactgattcaggactCACAGATACAGCAAAAAGTCAAAAAGCTGATGGATGCACAGGTACAGGTACCCAAAGGAAAAAATGGCCCAGAAGATGCCAAAAGAAAACGGCTGGCAGGGCCTGAACAGAAGACATGCTTGGACACCTCTGTATCCAAGGATGTAGTAAAAGGTCACAATGAGATGCAAAGCATGTCCACAGATGCCTGTACAGACAGCAAAGTGTTGCTGTATTGTCAGGGCTCAGATGAGGAAACTCCCACTGAAAATCTCATTGAGCCACTCtgttcttcctcatcttcatttCAGTCTCAACAAACTCAAACTGGAACATGTGGTACTAACGGGAAAGCTTGTATGGCTGTATCAAGGAGGACTCCAGCTCGACAGAGTAAAGGGAATGGGAGAGTGTGCACGGCATGTCCTTGTGGAACTAAGGTTGGAGCCATTGCTGCAATTTCACCATTTAAATCTCTTGAAAAGCCAAATAGGCCTGCTGTCATTGACCCACCTAAACAGGCGAGTGTTTTAACAGGGTCAAACAGAGATTGCAAAAATGTTGGGAAGGTACTCAACAAGCCAGTTACAAGCCCACCAAAAAGCAGTGTGGCATCTGGGAAGTCTGGAGACGAAAAGTTACATAGCACTGAATTGCACACAAAGCCCGCTAAAGGTCTGAATCCTTCGTCTTTGTCCATGCAACATGATGTTAGTCACTCAAGCTCCAGCTCAGTTAGTTCAGAAGAAGCTGcaagcagcagcaccagcagcaacAACGCTTTCATTGAATTGTACTCTTCTGTAATGCTGGACCCTGAGGAATTAAAGCGCCAGGAGCGAATCAAACGCCTCAAAGTCCTTCTGAAGGAAAAAGAAGCAGCCCTGGAGAAGTTGCGGCAGAGCATGTGAAAAAGCTTCACACATCTGAATTTATCTTTGGTGGCTTGATCTTGATTGGAAAAGCCATCAACTCGTGAGGCAGCTCTCagtttatatgaaaaaaaaaaaaaaaaaaagaaatcttgtTCTTCAttctatgtaaaatatataaatactttttaatttgtttatttccaATATGCAATTTCATTGTCTAGtgcattgtgtatttttaagtttgtatttaatgcttttgtttgtcatttttgtTGTAGTGTCAGTCGGTCAGTCAGATTGCCAGACCTAGGTCAAGACCTGCACTTAAAGAAATTCAATTCAGTCCACAAATAGGCTTAAATTAAAAGAAGTGGACTGATctactttatttaagtattgtAAAGTATTCTTTAGGGATCTCGAGTTCTAATATTTCTTAATATTTAGCAATGGTTACTTAAGACctatgtgaaataaaaaataaaatgatattttcAAATATGTCAGTTTTGATAATACCACTTTAACCTGCCCTTCAACACTTATCTATTGAGAACTGTAATCTGCAGTTTCAGACgttcatttaataaatgaaaaaatgta

Function

NR:

description
PREDICTED: ligand-dependent nuclear receptor-interacting factor 1

GO: NA

KEGG:

id description
K23220 LRIF1; ligand-dependent nuclear receptor-interacting factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231873.3 True 3484 mRNA 0.42 5 7608883 7615983
XM_007231874.3 False 3451 mRNA 0.42 4 7608880 7615983

Neighbor

gene id symbol gene type direction distance location
apex2 NA coding upstream 1008 7603019 ~ 7607872 (+)
csde1 csde1 coding upstream 12303 7573582 ~ 7596577 (+)
porcn porcnl,LOC108437582,LOC108265978,LOC107549961 coding upstream 37322 7556357 ~ 7571558 (+)
LOC103033322 LOC108437580,LOC107731173,LOC108266008 coding upstream 123136 7350669 ~ 7485744 (+)
LOC103033640 LOC108437579,LOC108265805,LOC107731248 coding upstream 272047 7242125 ~ 7336833 (+)
dock8 dock8 coding downstream 2216 7618199 ~ 7718993 (+)
ercc6l2 LOC107724913,LOC107689281 coding downstream 435707 8051690 ~ 8070806 (+)
slc20a2 slc20a2,LOC107594502,LOC107724891,LOC107669617,LOC107711867,LOC107602837 coding downstream 493839 8109822 ~ 8176783 (+)
LOC103033636 NA coding downstream 627899 8243882 ~ 8244724 (+)
LOC103034161 LOC108437597,LOC108437601,LOC108265423 coding downstream 638585 8254568 ~ 8257952 (+)
G50227 NA non-coding upstream 526534 7003089 ~ 7082346 (+)
G50258 NA non-coding upstream 528739 7077233 ~ 7080141 (+)
G50253 NA non-coding upstream 536394 7066875 ~ 7072486 (+)
G50224 LOC108412504 non-coding upstream 612686 6985536 ~ 6996194 (+)
G50197 LOC108442380,LOC105898899,LOC107667993,LOC107549944,LOC108265139,LOC105418848 non-coding upstream 817183 6788872 ~ 6791697 (+)
G50439 NA non-coding downstream 323618 7939601 ~ 7942748 (+)
G50535 NA non-coding downstream 429718 8045701 ~ 8046053 (+)
G50550 NA non-coding downstream 486092 8102075 ~ 8102287 (+)
G50565 NA non-coding downstream 586454 8202437 ~ 8203419 (+)
G50580 NA non-coding downstream 686533 8302516 ~ 8302910 (+)
trnae-cuc NA other upstream 624619 6984190 ~ 6984261 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other upstream 666902 6863356 ~ 6941978 (+)
G50063 NA other upstream 1232175 6371520 ~ 6376705 (+)
LOC103023397 NA other upstream 1819615 5777052 ~ 5789265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 1981428 5619159 ~ 5627452 (+)
c6h9orf3 NA other downstream 114701 7730684 ~ 7884058 (+)
G50568 NA other downstream 591359 8207342 ~ 8221162 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other downstream 654265 8270248 ~ 8278756 (+)
G50583 LOC108437602,LOC103398889 other downstream 726957 8342940 ~ 8344514 (+)
G50889 grid2,LOC107556295 other downstream 2027391 9643374 ~ 9782721 (+)

Expression


Co-expression Network