XLOC_000787


Basic Information

Item Value
gene id XLOC_000787
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 56851035 ~ 56857465 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003246
TCAGTTTCTGTTGATGTGCTGCTCTTCAACACGGTAAGACAAACACACTGGTATTTGACTGATGATTAGTGTAGATGAAGCTCATATAACACATGATTTGTGACATGAGAAATATCTTGTGTTGATCTCAGTCATCAGTTGATTTACACACACTGATGTTGTGCATTAATAATCTGCAGATGTGTTAGTTGGCTAATGAGGGCTTTCACAAATGCACCCCTGGATGATCCTTTTATTCTTTGGTCTAGAGCACACAGTGTTAATTTCTGTcaaaaaaatatctgaaatactgattcatcttaccccagtacacgtttccactgtgtaatggtccatcccagatgcatctgagcccagagaagttgacgGCACTTGTTCAGATTAACAGAAAGAGGCTGCAGTGAGAGGCGGAGCCAGAAATCACCCATCCTGAGCTGTGTGGGCGGAGCCACAGGTGATTGACAGGGATCATCAGTGATGAGTCAGGGAATTGCTTTATAGTCttaaagtgtttaatatttcCTGCTTCTGTTATTCTGTCTTCTGTGTTCCTGTAAGTGATCAGTTTCATTAGTGACGGTCTCATATGTGTTTGTGCAAACCCTCACTCCACCAGCAGAGGTCTTCATCTCCTGATACTGATAGAAATGTTTATGTGGTTTTATCTTGTATTGTGCTGGATGTTATATTAATGTATTCtctagttttttgtaatttgttttctttaagaGTTTCAGTGATTTAAACGCCTCTGGTCATGATTTTATTTCAATGGTGTGTAATGTGTatctctttaatttattttaccagTACTTTGCCAGAGTTTTACAGCTTTTACCATGCTAATAAAGCCACCTGAGTAAGAATAATTGATGTTGTTGGCCTTCCTGACATTCATAAAGTGATTAAACTGTTAAACTCATCTGAGATTCTGCATGTGAAAGTCATATTTAAAGTGCATCTTTTATACATTATTCTGAACATTGATAAACACACTGATCAGCCAATGCCTTCCCTGCTGGACTGAAGACTCCACCCCCTTTCTGTCACATGACACAAATGAATTCCTGTAAGTTGTGCAAAACCTGAATCTACCAGCAGAGGTCTCCATCTCCTGCTGCTGATACTGTAGAAACACTGATGTGCATCAACTGAAGATCAACTTTTATCCTTTTATTTCTGCAGAAACACCAATAAGTGTGAAATAGACTTGAGTaaattaacttaacttaattaAAACACATAAAGTAAAAACACATTCATCTTTAGTCACTGGTAGGGTTTTTGCTGATGGAGGAACACTGATAGTTCTGCAACTGTGTGTAAAACAGTGTTAGCCACAGAAAGACTGTCAGTTTAAAGAAGAAGTGCATCTCTTTACACACTCAGTCCATCAGTCGCTGTTGATCCTCTGCTCTTCAACACGGTAAGACAAACACACTGGTATTTGACTGATGATTAGTGTAGATGAAGCTCATATAACACATGATTTGTGACATGAGAAATATCTTGTGTTGATCTCAGTCATCAGTTGATTCACACACACTGATGTTGTGCATTAATAATCTGCAGATGTGTAAAGATCTTCCTAACACTAAGAGCTGTTTAGGGTGATGTACATTTACTGTTGATGAGTGTAGAAGTGATGATTAATGCTGGATTCTAGATAGATTTGATGCTGATGTGGCTCAGAAtggctcctgctcttcatctgatCTTTCTGCTCATCATTCACAGTGAGTCAATCTTACATTCACATCACTGCTTTATTTctctgcatttacacacactacacacaatcAGACATTATTCAGCAGGTTTCTGATCATCTTCTCTCTGATATAGGAAGTTAGGCTGTGCTAGAGGATCTGTTTTCTCAGAAGAGAGTCTTTAGTTAAAGTGTCACGGAACCAgccagttttagctgttttttcacACCACTGGTTTCAGCTGTGATGCACTGAAGTGCTGAcacaggtcacactttattttgatggcccatgtgttgaatttaagttacattgcctCTACTTGccaactaaggccccgtttaaaacgcataagttttgctacggttacgccatccatccacactacgccggagttctcgagcgccgaaaacggagctttttggaaacgctggagaggccgttttcattctaaaacgctgctgctccgtctcagtgtagatggggaaagacggagacatctgaaaacggaggcggggctgccgacattcgcctatctgattgggccttttcctcaatattaagtagcccacacacagttcagtcctccATCCTCTTCTTATAAGTTCAGACTTctcaagtttgatcaaggctgcagtctcttcttctcagtttgatatggaaaacagactataccgaggacacgggtaaatcttttaagggaacagtgtactttataaattcattcacatcaccttggctacgttgtttcacatTCACTTTCACGTTGTTTCATTAgtcacattcaaatcaagactgaaaacacatctgtttagctgtgcctttactgaatgagcactgtgcttcgtccgacagattgcactatcatgtttttctcttcttcttcattcttttatatcacattttacctgcttttatgttttgttttgtttttacgcatttttattatttgtttttatttttattttacttgtttcttttattactgtttatgtaaagcactttgaattgccattgtgtatgaaatgtgctatataaataaacttgcctttccttgccttgcctttctcaacaataaaatgtaaacatgatttaaggaactgcctattttcattttattattagcaactaaacagacagcagaaatgttgaggcgttgtgctgcatgagcgtcatcttcactgtgtggatatttataacaaaacggagccgataacaactgcctcctttcagtTTCAgtaaaaatacgaaacacaccctctcttttgctgtatatcagttttaatcatcgataatggccattataaaagtgtaacatacaataagtttatacattataggaaataaaggcaagcgattagtcaatatacagaatgtacatggattaataacttatctttgcgcttaaccaaaacatgttacctgtgaacaagtaatagattccaatgaccagggaatatgtcgttagataaagacaacaacatgaatgaaatatcacgtttagcaaatatagtgagattagatccagctggagatgcttgatgagaagtccgactagcagagctctcatccgGGTATaaatgctgcagcgcttgcccgagagtgtgtgtgtgtggtcaggtgatgtgcgttttcagcattttggtgtggacggagagcagttcagaaacgctgggtaaaacgtgagtgtggacgcggatcgttttcattctaaaacgctgttttaaaactaaaacgcactagtgtaaacagggcctaattctcattagattacaagtagactgttagactggggttagtgtaagttgacatgtacttgcaaagtttcttatagtcagtcaaatgtctgttaaagaagcagaatcaacatatattaagcagacagtctactaatgcttaaatggaccatcaaaataaagtgttaccctgacACAAATATAAATCTGAATAGGCAAAGTCAGGTAAACTGTACTGCTGATCTGCAAACAAAAACATGTGTGCAacataaatataattttggaGATGTAAAATCAACAATATTTAGGAACAGAagactttacaataaaataataatgtactaACATATAAACTACTGTATATTTACTTCATTATGAGATGAGGCTTGTGGTGATAACATGAGTTTTTATTATTGTCTAAACTAAACTtacctcggctcagatggcgtttctgtgtggagtttgcatgttctccctgcattcggatgggtttccactgggtgctccggtttcccccacagtccaaagacatgcagtataggtgaattgtgtaggctaaattgtccgtagtgtatgagtgtgtgtatgtgtggatgtttcccacagatgggttgcggcaggaagggcatccactgcataaaattgtgctggataagttggcggttcattccgctgtggcgaccccagattgataaagggactaagccgacaagaaaatgaatgaatgaatgactaaactaaactttaatgttctttaatgtcatttatttattattcatcacAACATTAGTTGATAATAAAGAAACATGCTATTTACATGTTAGtaaatcattatttattcataataattaaatttaactttttttttatgccCTGCTATTttctaatattgtttttttttttctcggctGGTTTATTTTCTCTGTTCTCTGTTTATTTCTGTCCACCATCAAGACTGAAGTCATTCACACTGAGATCATTATTCATATTCACAACATCAGCCTAAAATATCATCTGTAATGAGTCCCTGTGTACAACTAGTAAACCAGCATGTGTCCCTAGTGTCTTATAGTCCAGTTTAACTGATAAAACTACATGTTAATCATGATTATTTCTGTGTTTCAGGGGTTTCTGCTGCTGAATGGAGTACGAAATACAATGCTACAGAAATCTGTG
>TCONS_00001271
AAGTGCATCTCTTTACACACTCAGTCCATCAGTCGCTGTTGATCCTCTGCTCTTCAACACGATAGATTTGATGCTGATGTGGCTCAGAAtggctcctgctcttcatctgatCTTTCTGCTCATCATTCACAGGGTTTCTGCTGCTGAATGGAGTACGAAATACAATGCTACAGAAATCTGTGCCCTACAGAACTCAACAATGACAATCAGCTGCACTTTTACACACCCTGAGGGATTGCAGATCATGAGAGCCTTCTGGAACAAAAACGAGGTAAAACATGATGGAGAGCTTACAGATCTGTCTGAGGACCCTGAATACAGTCAGAGGCTTCAGTATCTGGGAGATAAACAGCACAACCGCACCGTCAGACTGAGTCATGTGACAAAGAAAGATGAACACGAGTATTATTTCAGAATTACTACTAATGTATCAGCTCAAAAATGGCTTGGTAAACCAGGAGTGCGTCTCTCTGTCACAGatcTTCAGCTGGAGTCTCCTGAGAGAGTGACAGAGGGAGATTCAGTCCGTCTGACATGTAAAAGCAGCTGTAAACTGACTGACACACCAACATTCATCTGGTACAGAAACTCACACACATTGACTAATATTGGAGATGAACTCAACATCAGGTCAGTCAGTAGAACAGAAGCAGGACACTACAGCTGTGGTGTGCAGGGACAAATGTACATCTCTCCTGCTGTTTATCTCGATGTCACATATGCTCCAGATACTCCTGTGATCTTCCTCAGTGGATCTGCTATAATAAAGGagggagattcagtgactctgatGTGCATCAGTCACTCAAATCCTCCTGCTCTGAACTTCAGCTGGTTTGAGGAGAATCAAAGCTCAGCTGTTGGATCTGGACAGAGTTTCAGTGCAGTACAGAGTGGACGCTTCTACTGTGAGGCTCACAATCCACATGGAGCTCAGAGATCAGACGCCGTCACTGTCACTGGTGAAGCTTTTATCATCACACTCCTGTAACTTCATCAGTCTGGAGAGTTAATCATGATCTGCTTCATCTTTCAGTTTATCAAGGCACTGGgagaaacatcatcatcattatcacaGCAACATTTGGAGGAttattcatcatcat

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0098813 nuclear chromosome segregation biological_process
GO:0072698 protein localization to microtubule cytoskeleton biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0006996 organelle organization biological_process
GO:0007049 cell cycle biological_process
GO:0007059 chromosome segregation biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006281 DNA repair biological_process
GO:0044380 protein localization to cytoskeleton biological_process
GO:0072686 mitotic spindle cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005815 microtubule organizing center cellular_component
GO:0005819 spindle cellular_component
GO:0044464 obsolete cell part cellular_component
GO:1905348 endonuclease complex cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:1902555 endoribonuclease complex cellular_component
GO:0004518 nuclease activity molecular_function
GO:0004519 endonuclease activity molecular_function
GO:0033204 ribonuclease P RNA binding molecular_function
GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000096656

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003246 False 4621 lncRNA 0.38 1 56851035 56855655
TCONS_00001271 True 1106 mRNA 0.44 5 56852400 56857465

Neighbor

gene id symbol gene type direction distance location
XLOC_000786 si:ch211-152f2.1 coding upstream 5559 56843411 ~ 56845476 (+)
XLOC_000785 BX927068.1 coding upstream 17033 56830798 ~ 56834002 (+)
XLOC_000784 si:ch211-1f22.5 coding upstream 23153 56823437 ~ 56827882 (+)
XLOC_000782 si:dkey-27j5.6 coding upstream 34340 56813845 ~ 56816695 (+)
XLOC_000781 NA coding upstream 43433 56806134 ~ 56807602 (+)
XLOC_000788 NA coding downstream 15632 56873097 ~ 56878634 (+)
XLOC_000789 NA coding downstream 22001 56879466 ~ 57016780 (+)
XLOC_000790 si:ch211-1f22.8 coding downstream 28749 56886214 ~ 56893355 (+)
XLOC_000791 si:ch211-152f2.3 coding downstream 43115 56900580 ~ 56904810 (+)
XLOC_000792 si:ch211-1f22.9 coding downstream 62277 56919742 ~ 56922160 (+)
XLOC_000776 NA non-coding upstream 167401 56669158 ~ 56683634 (+)
XLOC_000775 NA non-coding upstream 188384 56660197 ~ 56662651 (+)
XLOC_000774 NA non-coding upstream 247225 56569514 ~ 56603810 (+)
XLOC_000794 NA non-coding downstream 81882 56939347 ~ 56944389 (+)
XLOC_000801 NA non-coding downstream 258800 57116265 ~ 57120505 (+)
XLOC_000809 NA non-coding downstream 356828 57214293 ~ 57214954 (+)

Expression


Co-expression Network