c6h6orf226


Basic Information

Item Value
gene id c6h6orf226
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 6798654 ~ 6800365 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231894.3
tgaaagtctGGGTCAGGTCCTGTTCGGAAGGCATGACGGATACTGAACTTTAATCAATAAACAGCTTCGCTTTGGCTGAATATTTAGAGGCGAGAATGATAATTTCTCCTTCAGttaaacaatatttacacaCAGGAATTATTTACAGGTGAATATAGATATTAACCCGCTTATCTAAAACCCAGTACAGGCTGTAGTTACTGGTTTTAGCTCTGGTTCGCTGTAATGGATCCTGTGTTACCGGACTCTCAGTACAGCAGATTTGCTTCTTATGATTTTGAAAGCGATGCTCGTTTTCAGGAAGGTCTGAAGAAACTATCTAACCAGGGTTTACTGGAGCTGAAGATCTTCTATTATAACAGGTTTATTGAACCAGTAGATTTAACTGGTTTCCAGGAGTGGCGGGACAGACATCAGGATTCACAAACTCAGACATCTGAAGACATTTCAGTTACTACAGACACAAACTGTGTTAAAGACAATTCAAGCCAAAGGGAAACTAAGGAGGACACATTGTTGGAAAAGGAGACCAAGTCAGAACATggtgattccctcagttttgcAGAAGTGTTCCGCATGATTCAGGCTGGAGAGGAGATCCCTGGACTTGAGAAGTTGGACATTAAATCCTGTAATCAAAAACCTTCAGTTTCCCAGATACCAAGAAAGTTAAAACCCTGGGAGAAGTAATGTTTTGCACAGAACCATAAAATGGTGAACAAACTGTGAAGGCACAGTGCCAAACCCAGAAGGTTATGGATGTAAATATATGAAGCAATAAAAGAGATACATTTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231894.3 True 797 mRNA 0.40 2 6798654 6800365

Neighbor

gene id symbol gene type direction distance location
LOC103040567 gpr173,LOC108265110,LOC107549979,LOC107678674,LOC107731146,LOC107549585,LOC105898994 coding upstream 27593 6748399 ~ 6771061 (+)
was was coding upstream 196912 6590291 ~ 6601742 (+)
LOC103041483 slc38a5,slc38a5b,LOC107745748,LOC107678718,LOC107549617,LOC107731265,LOC107668060 coding upstream 211309 6546569 ~ 6587345 (+)
LOC103043236 NA coding upstream 326566 6461543 ~ 6472088 (+)
LOC103037089 LOC108442388,LOC105023850 coding upstream 397821 6392824 ~ 6400833 (+)
LOC103035560 NA coding downstream 141325 6941690 ~ 6960632 (+)
LOC103037743 LOC108437573,LOC107549481,LOC107668067,LOC107731205,LOC107745762 coding downstream 226284 7026649 ~ 7039636 (+)
LOC103034603 NA coding downstream 323483 7123848 ~ 7130581 (+)
LOC103033640 LOC108437579,LOC108265805,LOC107731248 coding downstream 441760 7242125 ~ 7336833 (+)
LOC103033322 LOC108437580,LOC107731173,LOC108266008 coding downstream 550304 7350669 ~ 7485744 (+)
G50197 LOC108442380,LOC105898899,LOC107667993,LOC107549944,LOC108265139,LOC105418848 non-coding upstream 6957 6788872 ~ 6791697 (+)
G50195 suv39h1 non-coding upstream 10451 6782888 ~ 6788203 (+)
G50188 NA non-coding upstream 21755 6773399 ~ 6776899 (+)
G50172 NA non-coding upstream 68098 6697103 ~ 6730556 (+)
G50138 nt5dc2,LOC108442396,LOC107745746,LOC107668043,LOC100380632,LOC107678756 non-coding upstream 294323 6500149 ~ 6504331 (+)
G50224 LOC108412504 non-coding downstream 185171 6985536 ~ 6996194 (+)
G50227 NA non-coding downstream 202724 7003089 ~ 7082346 (+)
G50253 NA non-coding downstream 266510 7066875 ~ 7072486 (+)
G50258 NA non-coding downstream 276868 7077233 ~ 7080141 (+)
G50439 NA non-coding downstream 1139236 7939601 ~ 7942748 (+)
G50063 NA other upstream 421949 6371520 ~ 6376705 (+)
LOC103023397 NA other upstream 1009389 5777052 ~ 5789265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 1171202 5619159 ~ 5627452 (+)
G49475 NA other upstream 2552427 4244528 ~ 4246227 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other upstream 2558781 4199939 ~ 4239873 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other downstream 62991 6863356 ~ 6941978 (+)
trnae-cuc NA other downstream 183825 6984190 ~ 6984261 (+)
c6h9orf3 NA other downstream 930319 7730684 ~ 7884058 (+)
G50568 NA other downstream 1406977 8207342 ~ 8221162 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other downstream 1469883 8270248 ~ 8278756 (+)

Expression


Co-expression Network