LOC103040567 (gpr173,LOC108265110,LOC107549979,LOC107678674,LOC107731146,LOC107549585,LOC105898994)


Basic Information

Item Value
gene id LOC103040567
gene name gpr173,LOC108265110,LOC107549979,LOC107678674,LOC107731146,LOC107549585,LOC105898994
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 6748399 ~ 6771061 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231898.3
GGAATGTGGGCCAGCTGGAAGTTCGCAGCCGAGCCGAGCGGAGCCGAGTGTTTCCGAAAGCAGCCGAGCGCTGGAGGCTGGGCGAGCACACGCACTCTCCCCCGCTCACCGCGCAAAAACAACAGCTCcgcttctctccctctctctctatctttctttttaacGTTTTCCTTCTCCATCCATCccgctctctctatctctctctctctttttatcttgcATGTCGTGATCGTGATCGCGGCGGACGGACGGCCATGAGGAGGGGTGCTGGATCCCTGTGCGCGCTCTCCACCCAAACAGGCGCGCGACTGTAGGTATATAGGGCGCCCGTATAGGATGAGCGCGCCGTGCCAGTGGACGAGCCTGAGCGGCGGAGACACGCAGAGGGCTGCTGCTTGATCCCATCAACCGGATTAAGTCCAGCCCAAGATGTGCCGAAACGTCCGATGGGGGTGAGGTGCGCAGCTCCAGCGGCCGAGATTCCAGCGAGACGAAGACGACGACGGAGAAGAAAGGCTGGGAggaggaagcagcagcagcagaagaagcagcagcaacagcagcagcagcatccctGTGTCGCACAGCCCCCCGTTATCCAGATCCACCTGACCGCCACACCGAGCCCCACATCCCCGGATTAAACACCAGGGCTAAACACCCCGTAAACAAATAGCCTGTGTTTATTTAGATAGCTTATTTGCTTGTGCCTCGGTTGTGGAGGGGAATACAGCTCATGTTCGAGGCTCTCACTGGTTTTATGGAAAACCCGGAGACATGACATGCACACGAAAAAAGAGGAAACGGTATCTGTCGATTTCTGAAGCCCCCGTGCTCgtcagctagctaactaactagctctgcttttttttctcaaccCCAACATGAAACGGGATTCATGGATTTTGCGTTGTAGCTATCGTTTCTCCCCACAGACGTAACGTTAACCATTCtgtgcattaattaattaattattctttatttatttcattatttatttcctCCTCTATTACAtccttctgctctctctctatacttGGCAAGGGACGCGAAAATCGATCTTGGATTACCAGCTGGATTCATGTTGGATCCACTGTGCGAGGTGTGTCGGTGCCAAAAGACACATTTCCCCCCTTTTCTGTGTTTTCGTGGCTGGCTAACTGCAACAAGCTCCCGTTCAGGCCTACAGCCGGAGCCACAGCCATTGTCTCGGATACAGACTTGAGGACAGGCTTGAGGATTCTAGgtGTGAGAGTAGGAGGGAAGAGGAGGCCGTTTTGAAAGGTAGCTCCAAAGAAAACTGTGCAAAATGGGGCAATGCAGAACCAGCCACTCCTGTTCCATGTGAGACAACAACAAGAGGCAACCACGAAGACGGAAGACAGCTCAGCCGGAGGAGGcggaggaggtggagggggaggaggtgACAGAAAAGGAGGTGTTTGTTCcaaaggagaggaagaagctCCACAGTCGGAGCAGAAAGAGGGATGGCCAACGGAAACGAGAGCAGCGACGTGCCCAGTAACCCCCTGGCAGCAGTCGTGGCTAGCACAGGTGGCATGGTGGGCGGAGGGCCTTCGTCGGCCGTGTCCACCTACGTTAAACTCGTCCTTTTAGGGCTGATCATATGCATCAGCCTAGTGGGCAACCTAGTGGTCTCTCTTTTAGTGTTAAGGGACAGGACCCTACACAAGGCGCCGTACTATTTCCTGTTGGATCTCTGCCTGGCCGACACCATTCGATCGGCGGTCTGCTTCCCGTTCGTACTAGTGTCCATCAAGAACGGCTCGGCCTGGACCTACAGCGTGCTCAGCTGCAAGGTGGTGGCTTTCATGGCCGTGCTCTTCTGCTTCCACGCAGCCTTCATGCTGTTCTGCATTAGCGTCACACGGTACATGGCCATCGCACACCACCGGTTCTACTCGAAGCGCATGACCTTCTGGACCTGCGTCGCCGTGGTGTGCATGGTCTGGACACTGTCAGTCGCAATGGCTTTCCCACCCGTCTTTGATGTAGGTACCTACAAGTTCATCCGCGAAGAAGACCAGTGCATTTTCGAGCATCGCTACTTCAAGGCCAACGACACGCTGGGCTTCATGCTAATGCTGGCTGTGCTGATCCTGGCCACTCACGTGGTCTATATGAAGCTCTTGCTCTTCGAGTACAAACACCGCAAGATGAAGCCTGTCCAGATGGTTCCAGCCATCAGCCAAAACTGGACCTTTCACGGGCCCGGAGCCACCGGTCAGGCGGCCGCCAACTGGATCGCGGGATTCGGACGGGGCCCTATGCCACCTACCCTGTTGGGCATCAGGCAGAACTTGCACAACCAGAACCGACGGCTGCTGGGCATGGAGGAGTTCAAGGCCGAGAAGCAGCTTGGCAGGATGTTTTATGTGATCACCCTGTTTTTTCTGGTGCTGTGGTCACCGTACATTGTGGCCTGTTACTGGCGGGTCTTTGTGAAAGCGTGCACCATCCCACACCGGTACCTCTCCACTACGGTGTGGATGAGCTTTGCCCAGGCAGGGGTGAATCCCATTATCTGCTTTTTCCTTAACAAAGACCTGAAGAAGGGTCTGCTGGCCCACCTGCCTCCCTGTTGTAGAACTAAACCTCAACTACCCCGTGAGCCTTATTGTGTCATGTAAAGACAAACActgattcattttcttttttctttacgaTTCTTTGTCTTGGTGTGGGTGACAAACAGACAGTTAgaagaggttaaaaaaaaaggtataataGGATGGAGGCACGAGGGACATTTTCTGTTACTGTGGCCTTTGATTCAGTGCACGATGCTTTAATAGGGTGGGCATcatggaaaaacaaacaaacaaacaaacaaacaaaaaaacaaagcatcTGCTAAAGCGTCACCTAAATGCtaagtcttttctttttttgagagTTTTACAGGGATTTTAAAGGATTCGGGGCAAAAACGTGAGACACTAATTCATATATAAACAGTTTTGAGTACTATTAATCACAAGCATGAGGGTGCTatcgtttaaaaaaagaagaaaaaaaaaacagctgttttcacaccaaaacaagacaaaaaaacattaggCGAGCAAATTGAGGCAAGGATTGAATCACAAAAGGCCAACTCTGATTGAttctatttttaaagaaaagaaaaacaccacTCTTCTATTGACATCACCTGTTAACTgttaaaccctttaaaaaaaagcctagGATCGATTACTAGCAAATGTGAACTTTGTGCATGCATATGATCTAACGTTTAAAGATAAAACGTGTAACAAATAAACAGCCTACGCATAAAGCTAATTAATGAGAGATTAAAAATTGGTATGTTTATTCACCATTATCTTTGGAGTGGACAGttaaactaattaattaaatcctaacaataactctgattattttagtaatagagattattaaaaaaacagtacaaattgttttatttatttgttatttgttgtaAACTCCATGCACCAAAGACACCATTGATCTCAAGGAAGCTGTAGTCGAAGCTACGAGGTTCTGTCACTGCAGATTCACGGCGTAATTACATTCGCAGGCGCTCTCATGTTTAACAACTTTAATTGCGTTTTTGCTGAGGAAATAGCGCactatttatttggtttatttactTGTCTCTACTGTATTTGTGTATAATTTCTACCGGAGAGTGTAAAACTATTTCTATTAACATTACAGTGCAGAAAATGACTAATGCCCTCCAAGTTTATTTGACTGAACTGAATCGTCAGGAACGTGAGCAGAGtcttgatataaaaaaaacagaagagtaACTGATGAGGTAGCATGACACAAAAATCTTACGTCAATGTTGTATATGAGGAGTCTACAAAATTTGCATTACAGATGTAATTTTAATTGCTATTGACTGAAACTGATCTGGCCGGAGTGTTTAGAGGATGAATCAGTCCCTGTGCCATATCTTTTCAGGTGATCTTACTCTTTATGTCACAAAGAACACCTTAAAATACTTGAATTAATGTGAaattattgcacattattgcaatTAGAGTGCAAGTATTGCTGACCTGATATTACAAGAtgctacagtatttacagtgtgATATGTAACTACCAGAGAAGCAGTATTGTTGCATTATTTGCGAGGTCATCAGAACTTTTTGAGAAAAGTGCAAAATTTGAAAAGTTGGCCTGGATAATAgagtattaaaataataataaaaaatatatatataaaaagattgAATGGGAGGTTCAAGAATGATTTAAGAATGATTAATTTGATGAAttcaatatgctttaatataatcatttaaaaaaacaaacagaaacataaacagaatgaagttgcagaataaagaataatgtGGTGGTTTAACAtcaaattactttattattattactactatcaTTTCAACAACATTACACAAATCCGTATTCTCATAGGTATTAGTTGAACTAAGTTGAGGATTTGGGGATGGGACAGGCAGGGACTGAAATGATTAATTTGCCTGATAGTATTTtgcacacaacttcagaaattgcTGATAAGTGAAGTATATTCTTGAGATAATATGTGAACTCACTTGAACTGGAATGCTGAGCGATGTAGGCAGGGACACAGAGATTGTAATATCAAAACGAATGTTACAGAGAGCAGAAAATTGTGATCTTTCTCGCGAGGTACTCTTCAGATTGTTCGAGGTGATCTGCtccattttttgttatttatttggcaaagagaaagagaataacaGGAAAATGAACCAACAGCTTCAccaacaattaaaaaacaacaaccatcTACAAAAAGTAGATGAAGGAATAATTATTTCTGTTATCTGCATTTACTGCCTTACTCTATTATCAAGGTTTGATAATTGATACTGATGTAAGGAAGATTTGACAGCTGTATGCCTCTAcagacactgagaaaaaaatatataataacgaATGCTGGGGAAAATTACACTGTGTCGCTGACTATTGGAGGACATTCTTCACTCCCCTTCACAACCATACAAACTGAGGTCGCATCAGAAGGGTGACACACAtagctggaaaaaaatattgccaAATTGTGACACTGGAGTGTACAATTTTGCACAGTCCAATGGAAAGACTTGAATGCAAAAACTTGATATCCTGTGGAATTAAAAGGAACTTCCTTAATTCTTGTGGATTtctttaagacatttttttggtttttgatttggttttcgttttttcctcttcttcttcgtATCTTTTGGGGGTCAGGGGAACGGAAGTGGATGAAGGTGGGCAGTGTTGTGTATTCATACGTGGAAAAGGATTGGAAAAAAGAAGAACCAGCGCTCGATTCGGTGTTTGGGAGGGCGGGCTTCGCGGGTGGGTGAAAGGGGAGTGATTTTTGTAATGAGCAAAATGCCTGGTAGAACATTTTTAGTTGCTTCAGGCAACCTATCTTTTGTAAAATAACTGTGACCTCTGTACGATTTCCTGTGTATTATATGGACTATGGACTAACTACAAacggggggagggggagggacTCTTGGTCATCATCTTTTTACTGCgcatgtgtgagtgagtgtttaTGCGGAGTATGAATGTGGGAGAGAACCAGGGGGACTGTGGAGAAAGCCACGTATGAAAcagctggagaagaaggacagaCTGATGAAAAACGTAACTCCTGCAGATGATCTTTTGCTTTCCCTTTTCTAAAAACTAAAGGAAATTCAAACATGTTTGTCCTGACATATTTGAATGCTGATTCACGTTCCACAcgaaaactgtgtaaaatccGTGTAGCCTATCAAAAACCCtgattttaaccatttcttcaTAATGAGTAAAACTCCTGCACCAAAATAGGCTAAAAAATTTCACTCAGGCTCACACTAATATTAACATAACTAGCTTTCTAATTCACCAGCTAATTCAACTGTCAGCCTATATGAGTATGTGCCAATACCATGATTATGTAGTATACCCAACCAATCAGACCAATTAGATCaacccaaataaaaatgttgcatttatttttgtaaataaattacataatatCAGTCACATCTTAAGTTATGTTCATTAAAACACCTGAATTGTTTAAAAGGACTGAAAGAAATAACAATATCTTTGGTCAGTCCCCCTAGCTGTACCACTCTTCCCAATGGGGATTCTGTGGGCCACAGTTTGGAAACCACTAGCACTAGATTCAGGgacaaaacattatttatacattaaatagCCTACAAAACATCAAATATACTCAAATTTTAGACCAACAATGTAGTTACACAAATCTGTCTCTGTTAGGAATTCTAATCAAAATCTGAACTAGGTGTGAGTTCAAACATTGCAAAACGGTTTAAATGAAATCAGCATTAGAGTCAATTAAAGCAGGATCATGTCGTACTTGTTATTTTTACTCGAGGGTTCCCCCCTACAGTTGCTAAGGAGGGTAATTCACTTTTGCCTCTTACAGACAGCTAAAAAATCTTCTTTTGTTAATAGACTGACTGAGATGCAgaattttaaagaagtaaaaaaaggcTGTGGACTGAGGTTTTAGAAGAATAGTACACACATATGATTCAGGAGCATTACACAGTACTGGTGAAGGGTCATATACAGGTTCACCAATGCTAAATTGTGCAGTCACAGTATTCCAGGCCCAGGGTAGCAATGGTAAAGAAGCCAATATTTCTATTACAAGTCAATGGAGCATCAGAGTCATTCTGAATTTTGTTATTCCAAGGTAACAGTACTACAAAATGTTGCTTTAAATCCAAAATATTTCATCAACAACTTTCATTGAATGTAATACTACAAAAATAGCTGAGATGGGCAAAAAAATTGAAAGTAACTGCACTACCCCTAAACTAACAGAATATACCAGCTTATTGCCATGTATCTTCTACTCTCCATGTGACATATCTGACGTAATTACAGCATTAAAACCAGTTACTGTCTCAGTGGGGATCTGGACTCTGCTTTAAAGCATCAAGTACATGATAATGGTAGCAGCTTCAAGGCTGCAAGCTGTGCTATTCTCATAACTGCTATCTCTTATTGTCTGCCAATTTCATTGTCACACTGATTACtggaaataaattaaagaataatTGAAATGCAAATGAATAGAGAGAAATATAATTCACAAACCTTGATACGCAGGCTTTGCTTTAGCTTTGAAACAGGGTTAAGACTAATACAGCATTTAGGGTCAGATTTCTGAATATAGATTAAGCTTGCTCTTGGACTAAATTACCATAATGATGATTCACTAATGAGACTTTCTTTCATTCTGGCACCAGGATTAACCTGCGCCCAGAAGACGAGGAGGGTTTACTCATTCAGCTCAGAGTAATCTGGATTTTTATGTGGGAGTGGGATATTTTAGCACGATGTAGAGAACACTGaatgataaaaatgatcaaacaatATTCCCTCACTGGCTAACATGCCAGGAAACTCAACAAACAGATAGCATgcagatttgggccacttctGGCAAAAGATAAGGCACTGCTGGCCTACTGCGTATGAGCCAAAAGCAGCCCATATGCACCAAAGCATGTTTGGTTCAGATCTGGCACAGATATTGCAGTTCTGCTACCAGAAATATGCATGTGAGCCAAAAGTGGCCCACatactgaacacacacattaGTCCCATATGTACCAAAGCATATCTGGTCTAATTCTAACACAGATATGGCAGCCTCTGGAAAACTGCATGACTGGCCCACATATTGGAAACACACATTTGGCCACATGTATCAGTGCATATCTGGTCTAATTCTAGCACAGATATGGCAGTGCTGCCTTCGGAAAACTGGATTTTAGCAAAAAGTGTGCCACAACAAAATTGCTATCTGGGCGAGATAAACCTCAATAACCTAAtccataaatattttttccttcAGGTGCAGCATTTTCATTTAAACATCTCCATATCTTTATCAATTAAGTGCCTGTTTTGGTCAGTTTATTTACAACATGCCTTTTAATAGTTCTTTTGACTTTCCTGACTCCTGATTTCTTATTAATAGTGCCTAATATATGTCTATTTTGAGTTGAATTCATTGGCATATATTCTaattaaaaatccaaaaaatggGATGTTCATGAGTTGAGTCAGTTGATATACTGACTGAGtgaataaagtatctatctatctatccatctatgtAAGGACAAACAAAATAAGTACATTCAAAGTACCATAGACAAAGAGCAATATACTCAATGgtcatattttattgtataaaataaaattatttgattCACTCTGGAGTTACCTTTTTAATCAGTCTgttctatgaaaaaaaaagatcaaaatgaGAATGTCAAGTTGGCTTTCAGATTGAAATATCTTGTTCTGTAAATTAAAgggtttttttcccccaacaCAACAATAAAAGTTTACTTTTGTTGCGTT

Function

symbol description
gpr173 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including digestive system; heart; integument; nervous system; and pleuroperitoneal region. Orthologous to human GPR173 (G protein-coupled receptor 173).

NR:

description
PREDICTED: probable G-protein coupled receptor 173

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04300 SREB3, GPR173; super conserved receptor expressed in brain 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231898.3 True 8421 mRNA 0.41 2 6748399 6771061

Neighbor

gene id symbol gene type direction distance location
was was coding upstream 146657 6590291 ~ 6601742 (+)
LOC103041483 slc38a5,slc38a5b,LOC107745748,LOC107678718,LOC107549617,LOC107731265,LOC107668060 coding upstream 161054 6546569 ~ 6587345 (+)
LOC103043236 NA coding upstream 276311 6461543 ~ 6472088 (+)
LOC103037089 LOC108442388,LOC105023850 coding upstream 347566 6392824 ~ 6400833 (+)
LOC103046076 LOC103046076,LOC108442386 coding upstream 377384 6358495 ~ 6371015 (+)
c6h6orf226 NA coding downstream 27593 6798654 ~ 6800365 (+)
LOC103035560 NA coding downstream 170629 6941690 ~ 6960632 (+)
LOC103037743 LOC108437573,LOC107549481,LOC107668067,LOC107731205,LOC107745762 coding downstream 255588 7026649 ~ 7039636 (+)
LOC103034603 NA coding downstream 352787 7123848 ~ 7130581 (+)
LOC103033640 LOC108437579,LOC108265805,LOC107731248 coding downstream 471064 7242125 ~ 7336833 (+)
G50172 NA non-coding upstream 17843 6697103 ~ 6730556 (+)
G50138 nt5dc2,LOC108442396,LOC107745746,LOC107668043,LOC100380632,LOC107678756 non-coding upstream 244068 6500149 ~ 6504331 (+)
G50136 NA non-coding upstream 248967 6499069 ~ 6499432 (+)
G50135 NA non-coding upstream 249391 6497994 ~ 6499008 (+)
G50092 tbc1d25 non-coding upstream 268407 6476575 ~ 6479992 (+)
G50188 NA non-coding downstream 2338 6773399 ~ 6776899 (+)
G50195 suv39h1 non-coding downstream 11827 6782888 ~ 6788203 (+)
G50197 LOC108442380,LOC105898899,LOC107667993,LOC107549944,LOC108265139,LOC105418848 non-coding downstream 17811 6788872 ~ 6791697 (+)
G50224 LOC108412504 non-coding downstream 214475 6985536 ~ 6996194 (+)
G50227 NA non-coding downstream 232028 7003089 ~ 7082346 (+)
G50063 NA other upstream 371694 6371520 ~ 6376705 (+)
LOC103023397 NA other upstream 959134 5777052 ~ 5789265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 1120947 5619159 ~ 5627452 (+)
G49475 NA other upstream 2502172 4244528 ~ 4246227 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other upstream 2508526 4199939 ~ 4239873 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other downstream 92295 6863356 ~ 6941978 (+)
trnae-cuc NA other downstream 213129 6984190 ~ 6984261 (+)
c6h9orf3 NA other downstream 959623 7730684 ~ 7884058 (+)
G50568 NA other downstream 1436281 8207342 ~ 8221162 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other downstream 1499187 8270248 ~ 8278756 (+)

Expression


Co-expression Network