was (was)


Basic Information

Item Value
gene id was
gene name was
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 6590291 ~ 6601742 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231900.3
ACCACTTAACACTGACTGACATCACCTCACAGAGTACGGAAGTCAGAGCTCCTTCAGCTTCTGGCAGATCTTTAACAGATCTTGGAGGATTTCGTGTAGGAAGTCGGCGGGGCAGAATCAGAGCCCCGGTTCTTGATCGAGGGTACGAGCGTGTTCCTGCCAGAGAGGGATGAGCAAAGGAAAGGTCAAGGTGCAGGAGAACATGACCAGCTCTCTCCTCAACATCCAAGAGAACGAGCGGCTGGTGGACCTGCTGGGCCGGAGATGTGTGtccCTGGCCACTGCAGTTGTGCAGCTGTATATGGCGCTCCCCCACAGCCCGGCCCACTGGAGCCTGCAGCACACCGGAGTCGTGTGCTTCGTCAAGGACAACCCGCGCCGCTCCTACTTCATCCGCCTTTATGATCTCAAGGATGAAAAAATGATCTGGGAACAAGAGCTGTACAATCAGATGACTTATTCCAGCCCCAAGCAGTATTTTCACACTTTCTGTGCAGATGATTGCCAAGTGGGTCTGAACTTTGCGAGCGAACAGGAATCAGATGCGTTCAGAAACACAGTAGAGGACAAGATTAGCCAGCGTTCCAATCGGCAAGATAAAAGACCAGCTTCAAATGAAGAGAAAAGAGCCCCGCCTCCATTACCACCATCCAACGGGCCGGGACCAGGACCAGGACCAGGCCAAGCGATGCAGCCAGGCGGCATGTCCACAGTGGATATCGCAAACCCAGACATCCTGCCCTCACGCTACCGATCTCCTACTGTCCCCGTGCCTGCACCCGCTTCCCTCGGCAAGGGTAAAAAAGACAAGAAGGGCAAGAAGAAGGGACCTCGGCTCACCAAAGCAGATATCGGAGCTCCCAGTGGGTTTAAACACATCAGCCATGTTGGATGGGATCCAAATGCTGGCTTTGATACCAACAATCTGGACCCGGATCTGAAGAAGTTTTTCTCTTATGCTGGTATCAGTGaagatcagctcacagacaaagAGACTTCCAAAGTCATCTATGACTTCATTGAACAGTCTGGTGGTCTGGATGCAGTTAAAGAAGAAATGAGAAAACAGGATGCCCTTGGCCCTCCGTGTCGAGGCCTCCCCCCGGTTCCAGGGGCCCCTGTTCCCCCACCACCTCGAGGGAGCCTCCCATCAATCCCAGGCCAGCCGCCTCCAGCTCCACCTTCACGCAACCAGCGAACACCACAACGTCCACCTCCCCCTGGTGGAAGAGCAGTtcctccgcctcctccaccTCCCTCTGGTGGTTATGgatctccaccaccaccaccacccagtggcggAGCTCCTCCgccacctcctccaccacctcctccacctccttctTCTGCCTCTAGCTACAGCAGCGGCAGCCCCGTCAGCCCTTCAGCACCTTCACCTTCAGGAGGCAGAGGAGCGCTACTGGACCAGATCCGACTAGGAACCAAACTAAAGACTGTTACTGAGAGTTCAGACCTGCCGCCTGCACCGCAGGACGAGGGCGGTGAGGGTCTCGTTGGAGCTTTGATGATGGTGATGCAGAAAAGAAGCAAAGTCATTCACTCCTCAGacgatgaagaagaggatggaggtgatgatgaagatgatgatgaatggGACGATTAATGTTGATATCCAGTTTTGgtacacacacgcatgcatacacacatacacacactcacattcttTATTTTAGGTACTGCATACAGTGTGCATATTAAAAATAGGATTATCATATGGGATTATGACAAGTTAGCTGATAGAGTCTCAACTATTGGTGTATATTTTGTCAACGGTAGAATGAAAGTAGGTTATTTTCACgtagaaattattttaatataatagcaactgtatttttttcagcagaATAAATTAAACTGTGCAATCTGTGCAAACGGCTCCGT

Function

symbol description
was Enables SH3 domain binding activity; enzyme binding activity; and identical protein binding activity. Involved in several processes, including Cdc42 protein signal transduction; positive regulation of nucleobase-containing compound metabolic process; and regulation of actin filament organization. Located in several cellular components, including actin filament; cytosol; and site of double-strand break. Implicated in Wiskott-Aldrich syndrome; X-linked severe congenital neutropenia; and thrombocytopenia.

NR:

description
PREDICTED: wiskott-Aldrich syndrome protein

GO:

id name namespace
GO:2000601 positive regulation of Arp2/3 complex-mediated actin nucleation biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0003779 actin binding molecular_function

KEGG:

id description
K05747 WAS; Wiskott-Aldrich syndrome protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231900.3 True 1902 mRNA 0.52 12 6590291 6601742

Neighbor

gene id symbol gene type direction distance location
LOC103041483 slc38a5,slc38a5b,LOC107745748,LOC107678718,LOC107549617,LOC107731265,LOC107668060 coding upstream 2946 6546569 ~ 6587345 (+)
LOC103043236 NA coding upstream 118203 6461543 ~ 6472088 (+)
LOC103037089 LOC108442388,LOC105023850 coding upstream 189458 6392824 ~ 6400833 (+)
LOC103046076 LOC103046076,LOC108442386 coding upstream 219276 6358495 ~ 6371015 (+)
LOC103046376 LOC103046376 coding upstream 235983 6350142 ~ 6354308 (+)
LOC103040567 gpr173,LOC108265110,LOC107549979,LOC107678674,LOC107731146,LOC107549585,LOC105898994 coding downstream 146657 6748399 ~ 6771061 (+)
c6h6orf226 NA coding downstream 196912 6798654 ~ 6800365 (+)
LOC103035560 NA coding downstream 339948 6941690 ~ 6960632 (+)
LOC103037743 LOC108437573,LOC107549481,LOC107668067,LOC107731205,LOC107745762 coding downstream 424907 7026649 ~ 7039636 (+)
LOC103034603 NA coding downstream 522106 7123848 ~ 7130581 (+)
G50138 nt5dc2,LOC108442396,LOC107745746,LOC107668043,LOC100380632,LOC107678756 non-coding upstream 85960 6500149 ~ 6504331 (+)
G50136 NA non-coding upstream 90859 6499069 ~ 6499432 (+)
G50135 NA non-coding upstream 91283 6497994 ~ 6499008 (+)
G50092 tbc1d25 non-coding upstream 110299 6476575 ~ 6479992 (+)
G50071 rpl10a,LOC103141192 non-coding upstream 166939 6418784 ~ 6423352 (+)
G50172 NA non-coding downstream 95361 6697103 ~ 6730556 (+)
G50188 NA non-coding downstream 171657 6773399 ~ 6776899 (+)
G50195 suv39h1 non-coding downstream 181146 6782888 ~ 6788203 (+)
G50197 LOC108442380,LOC105898899,LOC107667993,LOC107549944,LOC108265139,LOC105418848 non-coding downstream 187130 6788872 ~ 6791697 (+)
G50224 LOC108412504 non-coding downstream 383794 6985536 ~ 6996194 (+)
G50063 NA other upstream 213586 6371520 ~ 6376705 (+)
LOC103023397 NA other upstream 801026 5777052 ~ 5789265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 962839 5619159 ~ 5627452 (+)
G49475 NA other upstream 2344064 4244528 ~ 4246227 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other upstream 2350418 4199939 ~ 4239873 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other downstream 261614 6863356 ~ 6941978 (+)
trnae-cuc NA other downstream 382448 6984190 ~ 6984261 (+)
c6h9orf3 NA other downstream 1128942 7730684 ~ 7884058 (+)
G50568 NA other downstream 1605600 8207342 ~ 8221162 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other downstream 1668506 8270248 ~ 8278756 (+)

Expression


Co-expression Network