LOC103041483 (slc38a5,slc38a5b,LOC107745748,LOC107678718,LOC107549617,LOC107731265,LOC107668060)


Basic Information

Item Value
gene id LOC103041483
gene name slc38a5,slc38a5b,LOC107745748,LOC107678718,LOC107549617,LOC107731265,LOC107668060
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 6546569 ~ 6587345 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231901.3
GTGCTTCCCCCCTGCTCTCTCTCGCACCCTGCACTGGATCCATAgtgtcctctctctccctctctctcctctggctCTAACTTAAGTCTTTTCTCTACTGGGAAAAAAGGCAACATCTCAAGCAAGAAAACTTCTCAGAGGACGCTTCACATCTCCTGCCTCTGAGAAAGACtcagtaactgctttaaaagATCATCATCAAAGAGAGCTTCTTTTCCTTCTCTACAAAAACTGcacataaaaaactaaaaacatggaACTTCAGAAACTGTCAAATGGACATCACCATGACTTTCAGCCTCTAGAAGATGGACTGTCACCAGAACAAGAAGAGTTTTTACCACATAAAAGCAATGGGAAAAAAGTACCCCAGTTTACTGATTTTGAAGGGAAGACCTCATTCGGGATGTCTGTGTTTAACCTCAGTAACGCCATCATGGGCAGTGGAATTCTGGGCCTATCATACGCCATGTCCAACACCGGCATTGTTCTCTTCCTATTCCTGCTGACATGTATCGCTATTCTCTCATCCTACTCTATTCATCTCCTCCTGAGGAGCGCTGGAGTCGTGGGTATTCGTGCATATGAGCAACTTGGCAACCGAGCATTCGGACACCCTGGAAAAATACTGGCTGCGGTTGTCATAACAATGCACAACATTGGAGcaATGTCCAGCTACCTCTTCATTGTGAAGTACGAGTTACCTTTGGTCATTCAAGCCTTTCTGGGTCTCACGCACAGTAGTGGGCAATGGTTCCTGAATGGAAACTACTTGATCATCATCGTGTCTTTGTGTATTATTCTGCCACTCGCCCTGATGAGGCAGCTTGGTTATCTTGGATACACCAGCGGTTTCTCTCTGACTTGTATGGTGTTCTTCCTCATTTCGGTTATCTACAAGAAGTTTAACATCCCCTGTCCTCTGGAGGCATTCAATAATTACACCACAGTCAATGTCACTCTGGATGGGCAATGCGAGAGCAAATACTTCACTATCAACCAGCAGACGGCTTACACGGTTCCCATCTTGGCCTTTGCTTTCGTGTGCCATCCTGAAGTCCTGCCAATCTACACTGAGCTGCGCAACCCCACTAAGAGACGCATGCAGACCATTGGCAATGTGTCCATCCTTGCCATGTTTGTAATGTACCTCCTGACCGCCATCTTTGGATACCTCACTTTCTACGCCAACACAGAGGCTGAGCTGCTGCACACCTACAGTAAAGTGGACCCTCTGGACACTCTCATCCTGTGCGTGAGACTGGCCGTGTTGGTGGCCGTCACACTGACTGTCCCTGTTGTGCTTTTCCCGATTCGTCgagctctgctgcagctgctgttcCCTGAGAAGCCTTTCCACTGGCTGCGTCACATCACCATCGCTGTGTGCCTGCTCTTCCTCGTCAATCTGCTCGTCATCTTTGTGCCCAACATTCGAGACATCTTTGGCATCATTGGGGCAACCTCCGCACCAAGCCTGATCTTCATCCTCCCGGGCCTGTTCTACATCCGTATTGTTCCAAAAGACCAGGAACCAATGAACTCAAGACCAAAAATCCAGGCTGCCTGCTTTACAGCTCTTGGTTTCATCTTCATGTCCATGAGCTTAACCTTCATAGCCCTGGACTGGATCACTGGGGAGAACCGCAGTGGAGGGGGACACTGATTCCCAGCCACGAACAAAGGGGGTCCAAAACGCCTGCTCAGCAGAACACCATCGAGCTGTCCTCTCCCATCAAACCCGGTCTGGAGTTTGAgagaacagcattaaaaaaccaaccaaaaaaaaacacacagtcacTGATAGGCTGGACCCGTCTCATCTCTGGTCCCTCACCCCACTGAGTCAGGAGAGGGCCTGCTTTCCGCCATATTGATAAATTAGAAAGAGAAACATGTCCTGTGGTGGAGGATCTCGGCAGATTACGACGCTGTCACTGTGTCTTCCTGTGGCAGTTGTCTCAGATAGAACATCCTGCATACAGTCATTTTCAAACAGTCATTTGCTCTTACAGCATCTGGAGACAAATGGCAGATACATTTCTGCTGGAAAATGCTGACAGAATACAGTACCAAATTCTAAAGGTTGTTGAGAAGCGGCTGtaagagaaatgaagagaggagagtccaaaaaagtaactggataggctttttttatttgaatgcaAACAGGATTGCTTTTCTAACGCTAAACAACAATTCTGTAACTTTGGCTGAACCCCTGTAAACTCAGCTTAAGCTGAACGATGTCATCGCTTAGAAATGTgccctatttttatttttattgtattttgatcAGATCAtagcatagactgtatataagagTAGAGAGTGCATGCCTGTTCACTCCTTCTGCATCGTGCCAAGCCAAAATATGGTCAAAATAGAAGCTGGCACTGAGTAGAGACTCAGTAAGTGACTCCAACTGCAATTCTTAGTGACAAGCCATTCgttttatgactaaaattaattttattagaaaTGAGAAAACATGATTAACACACAATGACAATAGACGACTCTATCAACTGCCCACCAGGTTCATAAGTACACCAATATGCCATTTCTAGTATTTCTAGTAATACTGCCATGGAAAAACCTCATTACTACACTCCTATGACCTCACATAATAActccaataaaatacattatttttgaaagaaagaaaagaaaaaaaaacaatggggGGGTATTAACATGGGAGGGTACTTACACAGGATTAGGTAAGGTTAAAAGTGACAATTTGAGACTTCCACTCTTATACACAGTCTATTATGTTTCAGATATGAAATACACACTGCAGCTTCATGAGAAACATACATTTCCTACATGATCTCAAAATGGTTTCAGCAGAAGCGTGTAAGACAAGACAATGCAAGTCGAAAACtctgtgcaaaaaataaattttaaagccACAATCACGAGATTTCAAAAGCCAATGTTTGCAAAGCTATTGACTCTTGAAGATAATTCCTGTAAAGTATTTGAAGTGCCATGTACAACTGCCATACCTCATACTGACTCCAGAGTTTACAATAGCAATGATAAATCATCTTgcgcctttaaaaaaaaaagccttattGCGTTCAGAACTCAGGCTTTTAATTTTGCAGCTTTTATTTTGGAGTGTGAAACACTCCCGAATTCGTCTTTACTGTTAGCGCTAAGTTTGTCCTTCTGAAATCcctgattgtgtttttttaaatttgatttacaAAAATACCAAGATAagttatacattatttttaacaattaGTTTTAGACATTTCAGTACTGCTTTgtattcatttgtttgtttgttcagtattatatttcatttgcaaaaagaaaaaaaaaaacagctggagGTACGACTTGATTTCACACAATGCTAAACTGATGGAGATCAGTTAAACGTGTGGATGGAAGTGCCGTTTACTGTGTTACAAGGTGCTTATTTATTCCATAGCTTTCTGAAATCCGTTCTGGAACCAGCTGTAACTGGTTCTAAATGGGTAACTGCAGCTCAACAAGTACACAGCTCATTTTGTTTATGTTGTTAGCACTCCCCCCATTGGACTTTAACCTGCAATCAGTGGTATAGTGGTATTTCTGAGCTGGCTGCTAAAAGTCAagccaaattccaaaaaaattaattgttttatgaaaacaaagagaaggaaaaaaagataaaaaacagaacaattgAAATTTCTTTTTATATCTTCGACCTGTAACTTACATTTGAGCCAATAGGACAGACCAGGTTTGTTTAAGAGCAAAAGGGAAAGCTATGCTAACATGTCATACGCCGCTTTTCCTCGTGGTCTGAAGAACACTGTGAATTCAACACTTCTTTTTGACATTTAATGCCAGGAGAAGTCTGAGGAGTTGTAAAATCTGCGCGATTACGGCAACACAAGTTTGAACGCTTCTTGAAATTTGAAATGCTTGCtacaaaactgaaaacaaataaaaaagagaaaaaatgctatttaaaaGGCTATTAAAACgtaaaaagcacaaaagcaAATGCAGCTCGCCTCAGCAGAGTGGTGCAAAGTGGTGCAAAGCCCTGACTGCTCCTCTTAAAAGGGGATGATTTAGAAAAACTTGCTGTTTAAAGGTAACTTCAGCAGGCACTTCAACAGACATTTGTGACTATTAAAGGGGtagtttggcaaaaaaaaaatacaaaatttaaacaatttttgacaaaataaatttaaaaaagtttttttgctACATCATGCTGCAGCTATAaggctagctaatattagtagCAAACCCTGCAATGCCAATACACCTTAATCTACCATgaccattttaaaacatttcccattattttatattaaatagtttATGGTTGTGTCACATTTAAAGTGACAATAGTCTGAAGGAGCTGCTGCTGTGGACACAGATCAGTATGTAgcttacttagctagctagctaactagctatcaaATACAGCACAGAGAGGCTGAAGTGTTGTGGGACACAATATAATCGACATCCAAAAAAGAGAAACCGTGTTAATAGTTAAATTTTTTTACCACTTTTTGGAGGGGAAACTTGGTTATGAAGTGGACGTCTCGGGTGCTTGTGTGGCTATTAGCTTAGCCTACGAGCTAAGCTAACAGTTAACCTGAGAGTTTCACACTTGCACTTCACTGGAGCGTCATaaacaagtgatttttttcTGTGGCAAGGATATTCTGGTGTGATTTCCCCTCCACAAAATGGCAAGATGCCTACCCAAAGATGGAGCTCTTcgtttgaatgtattttatatggATACATGTCATAACAGaacttattgtattgtgttagCTACAATGTTGTTTAAGCAAAATTTTCCTATTCTTACAATTATTGAAAAACCTTCTAAATGAGCATGAGATACTACtcattttgtatattattatcATTGCTGTATTTGCAATCTAGATCAACAAAAGATTGGATTAACTTTCgcacaaacatttttaacacaaagtaaaaaaaacaaaaaaaaaaacacccttttcCCCTTTGTTGCTATACAAAATAGGGTTAATACTAATACTTTTATTCATCACATGCCCACTGTTATTAACTCTCTCTGTTAACATTACATCCAGTTCTTATTCAAAGTGGGACAGATTTTATTGTTAGTGTTGTTTAGAACATAGTGTTTAacatatctttaataataatataaaaaacctTAACCTCATTTTGTCTAAATGGCTCTCCCTTGTCATCAGCTACACTACACTTATTCAGTTACATTGTGTCCTACATAATTCTTTACCACCTTAATAAAGACATATTTGAACATAGTTAAACAGATTAAAGCAaagtatacatacatacacactgaaAATATTACAGTGTGACTGCTGGCTAGTGgttgttagcaatgttagcctCATAGCTAACATCCAGTGCATAAACGAAGAAGCAAGATGTTCTTTGATTTGATTGATAATTTTTTCTGCCAAACCATTCCTTTAAGTAAACTTGACAAACATACTAAAGCACTTGTATGATCTACACACTTTATTCCTCCGGCTGTAACAAACTTATTTCCACTGAAGTGTCTGAGGAGTTACTTCTACACACTGTTTCAGGCTAACAGTACTTTCGTTCCTCATTTCACAGCGAGGCTGAGGCGCTCTGGACGTCACTGTGGTCATTAGATATCAGTGTTGTAGGCCGTGTCAGGACTTCTGAACTTGGCGATTTGTGTGGTTGATTATCTTAAACATGCAGGCTGTGccagttctgttctgttttttttttttgctgaataaaaagcttttaaaattaTGCTCAAGCAGCTTgcctcagtgtttctttgtaACGTGTTAAACAAGTATTGAAGTTTCTGTAACTTTGCCACCCTACTTTTCTTTTCAAAACCAGTAACAAAAACAACCTGTTACCTGTTTTTGTATCAGTACTGATAAATATCTatgttgtttatgtattttaacagcATATTTAAAAAGTAGAGGTGGCAACCTTTCATGTTTAATGATGAACTTTTATGTGACCTCCAGTTATGTGACACCAAAGAAAGTGGATGAAGTTGCAGTTTTCAATAAAGATGAATTGTAAGTA

Function

symbol description
slc38a5b Predicted to enable L-glutamine transmembrane transporter activity and glycine transmembrane transporter activity. Predicted to be involved in amino acid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including alar plate midbrain region; margin; pleuroperitoneal region; segmental plate; and tail bud. Orthologous to human SLC38A5 (solute carrier family 38 member 5).
slc38a5 Enables amino acid transmembrane transporter activity. Involved in amino acid transport. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane.

NR:

description
sodium-coupled neutral amino acid transporter 3

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14207 SLC38A2, SNAT2; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231901.3 True 6084 mRNA 0.40 16 6546569 6587345

Neighbor

gene id symbol gene type direction distance location
LOC103043236 NA coding upstream 74481 6461543 ~ 6472088 (+)
LOC103037089 LOC108442388,LOC105023850 coding upstream 145736 6392824 ~ 6400833 (+)
LOC103046076 LOC103046076,LOC108442386 coding upstream 175554 6358495 ~ 6371015 (+)
LOC103046376 LOC103046376 coding upstream 192261 6350142 ~ 6354308 (+)
lhfpl5 lhfpl5,lhfpl5b,LOC107591869,LOC107745833 coding upstream 295966 6246229 ~ 6250603 (+)
was was coding downstream 2946 6590291 ~ 6601742 (+)
LOC103040567 gpr173,LOC108265110,LOC107549979,LOC107678674,LOC107731146,LOC107549585,LOC105898994 coding downstream 161054 6748399 ~ 6771061 (+)
c6h6orf226 NA coding downstream 211309 6798654 ~ 6800365 (+)
LOC103035560 NA coding downstream 354345 6941690 ~ 6960632 (+)
LOC103037743 LOC108437573,LOC107549481,LOC107668067,LOC107731205,LOC107745762 coding downstream 439304 7026649 ~ 7039636 (+)
G50138 nt5dc2,LOC108442396,LOC107745746,LOC107668043,LOC100380632,LOC107678756 non-coding upstream 42238 6500149 ~ 6504331 (+)
G50136 NA non-coding upstream 47137 6499069 ~ 6499432 (+)
G50135 NA non-coding upstream 47561 6497994 ~ 6499008 (+)
G50092 tbc1d25 non-coding upstream 66577 6476575 ~ 6479992 (+)
G50071 rpl10a,LOC103141192 non-coding upstream 123217 6418784 ~ 6423352 (+)
G50172 NA non-coding downstream 109758 6697103 ~ 6730556 (+)
G50188 NA non-coding downstream 186054 6773399 ~ 6776899 (+)
G50195 suv39h1 non-coding downstream 195543 6782888 ~ 6788203 (+)
G50197 LOC108442380,LOC105898899,LOC107667993,LOC107549944,LOC108265139,LOC105418848 non-coding downstream 201527 6788872 ~ 6791697 (+)
G50224 LOC108412504 non-coding downstream 398191 6985536 ~ 6996194 (+)
G50063 NA other upstream 169864 6371520 ~ 6376705 (+)
LOC103023397 NA other upstream 757304 5777052 ~ 5789265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 919117 5619159 ~ 5627452 (+)
G49475 NA other upstream 2300342 4244528 ~ 4246227 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other upstream 2306696 4199939 ~ 4239873 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other downstream 276011 6863356 ~ 6941978 (+)
trnae-cuc NA other downstream 396845 6984190 ~ 6984261 (+)
c6h9orf3 NA other downstream 1143339 7730684 ~ 7884058 (+)
G50568 NA other downstream 1619997 8207342 ~ 8221162 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other downstream 1682903 8270248 ~ 8278756 (+)

Expression


Co-expression Network