LOC103043236


Basic Information

Item Value
gene id LOC103043236
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 6461543 ~ 6472088 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231907.3
ATTGTTGATTGACTGTATTGACTAACTTCAAACCAGGAGACATTAGAGCAAGTATCAGGGTTAGAGACAAAAAAGAATTCATGAGATGCAACAGAATAAACCAGAAGCTAATCTGATCGTTTTAAGGCTTTAAGACTACAATGAAGTCATTAATATTTTGTAAGATACTGCTCCTTGTGCTTCATGTTCAGCAAGCAGTCTCTCAGAGCGTGCAGTGCTTCACTGATTTTTCTCTGACGGATGGAACCTGCAGTGATCTTTTGGGGGACTTGCCACTTGAAGACTGCTGCATGAACCCGCAGTACGGCTTTGTGGAAAGAGGGGCTTGCAAGTCTTGTAGGTTTGCTCAGTGGACTGAGTGGAGTCCGTGGGGCAGGTGCTCAGTAAACTGTTTGCAGGGAGTGAGGCAGAGGCGACGGGCTTGTTATGGAATTGGGAAGTGCCAGGACTTCAACCAGCACGGCAGCATCCAGACTGAGCCGTGTGAGGAAAGCAGCTGCTGCCCAGAAAACGGAGGATGGTCCGAGTGGAGCCCATGGTTACCATGTTCAGTTACTTGTGAAACTGGATTCACATTGAGGAAACGGCTGTGCACTGAACCCCCTCCCAAATGTGGAGGCACTTGCATTGGACCCAGAGAAGAAAGAAGTGGTTGTGATACAGGAGTTGTCTGCCCAACTCATGGAGGGTGGTCTGAATGGGGCAGCTGGGGTCCCTGTGCAGGAATGTGCAAACATGAGGGCAACAGTCCCCCCGAACAGCTTCGCCATAGAACATGCACAAACCCTCCACCATCTGCAGTTCCTCCTGGAAATGACTGCAAAGGTCCCATCACTGACACCCAGCTCTGCCATTCTCTACCCTTCTGTCCAGtAAATGGAAGCTGGGGTGCCTGGTCAGAGCCCTCAGAATGCTCTGTGACGTGTGGAGTGGGAAGGCAGACACAGCGTCGAAACTGTGACAGTCCTGCACCCAAACATGGCGGCCTGTACTGCCAAGGCGATGACACCACTATATCACTCTGTAACACTAATAAACACTGCCCAGCGCATGGTCACTGGAGTGAGTGGGGTGAATGGGGTGAGTGTCAGTCAACCAgctctaaagaaaacaaatgcaaGAAGAAACTGGGACAATGGAGGAGAGTGAAAAACTGTTTGGGCAAGGACCACGGCGGTCAGGCATGTCCAGGAGACAGAGTGGAATTTGGCAAGTGCTTCAACATTAAGGACTGCCCCATGACAGGCATCTGGTCAGGATGGAGTGATTGGAGTTTCTGCAAACCTGACTGTGGAGAACATTCCGTACAGAAAAGAGTGAAGACTTGTGTACCAGACATCACAGGCTATAGTAATGCCGATCTCAGCATGTTCTCTGGAAAGCCCAAAATCAAATGTCCTCTCACAAATGacacagagtccagaccatGCTTCAATGTTCCTGAATGTTCCTGAGAGACCATTTCCACACTTTATCAGATGAAGGCTTAAGATCTATGTTTTTATGCCACTCGCTTGCAGCTTTggtctttttacattttatgtcaGGTGTGTTGTTAGTCTGCATTTCTATTTACCTCAGAAGCTTTGTACATTATGTCAATAAAACAGTTGGCTAAAGACTTTGGAGTATACCACAACTGGTTTGATCTGGTTTTATATGGCAATTCCAAATATGTCTCACATTTTTATGTCCCAGGTTAGTATTGCTGACATTGTCCcatgttagcattgttagtgATACTAGTTGATAACGCATTGTATGGTATTTTTCACCTCCACACACGATGGTTTACGACTGATTTTATGAGACACAAACAGATGAAGTTGTTTTGTAGGCTGGGTTTGTTATCTAAGAGGTAACACTCAGAGGAGACCTGAATGtgttcattacactgtgtacctgtactcagatgtaactACAATTAAAGCCTATTTGCTTTTGACTTTGATCTGCTCTTTGCTCTGTAATCGACAACCAGTTCATTAGTTTTGTGAATATTCAGGAAATGTATTGTTTGCACATAAAGAACTAATAAAGCTAATTCATCCTGG

Function

GO:

id name namespace
GO:0006955 immune response biological_process

KEGG:

id description
K15412 CFP; complement factor properdin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231907.3 True 2054 mRNA 0.46 9 6461543 6472088

Neighbor

gene id symbol gene type direction distance location
LOC103037089 LOC108442388,LOC105023850 coding upstream 60710 6392824 ~ 6400833 (+)
LOC103046076 LOC103046076,LOC108442386 coding upstream 90528 6358495 ~ 6371015 (+)
LOC103046376 LOC103046376 coding upstream 107235 6350142 ~ 6354308 (+)
lhfpl5 lhfpl5,lhfpl5b,LOC107591869,LOC107745833 coding upstream 210940 6246229 ~ 6250603 (+)
dclre1b NA coding upstream 534373 5919174 ~ 5927170 (+)
LOC103041483 slc38a5,slc38a5b,LOC107745748,LOC107678718,LOC107549617,LOC107731265,LOC107668060 coding downstream 74481 6546569 ~ 6587345 (+)
was was coding downstream 118203 6590291 ~ 6601742 (+)
LOC103040567 gpr173,LOC108265110,LOC107549979,LOC107678674,LOC107731146,LOC107549585,LOC105898994 coding downstream 276311 6748399 ~ 6771061 (+)
c6h6orf226 NA coding downstream 326566 6798654 ~ 6800365 (+)
LOC103035560 NA coding downstream 469602 6941690 ~ 6960632 (+)
G50071 rpl10a,LOC103141192 non-coding upstream 38191 6418784 ~ 6423352 (+)
G50051 mapk14a,LOC106572737,LOC108442382,LOC108265726,LOC105023895,LOC103368176 non-coding upstream 165194 6287836 ~ 6296349 (+)
G50050 NA non-coding upstream 166295 6292421 ~ 6295248 (+)
G50036 srpk1,LOC107591832,LOC107745731 non-coding upstream 180613 6265929 ~ 6280930 (+)
G50025 NA non-coding upstream 209662 6179792 ~ 6251881 (+)
G50092 tbc1d25 non-coding downstream 4487 6476575 ~ 6479992 (+)
G50135 NA non-coding downstream 25906 6497994 ~ 6499008 (+)
G50136 NA non-coding downstream 26981 6499069 ~ 6499432 (+)
G50138 nt5dc2,LOC108442396,LOC107745746,LOC107668043,LOC100380632,LOC107678756 non-coding downstream 28061 6500149 ~ 6504331 (+)
G50172 NA non-coding downstream 225015 6697103 ~ 6730556 (+)
G50063 NA other upstream 84838 6371520 ~ 6376705 (+)
LOC103023397 NA other upstream 672278 5777052 ~ 5789265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 834091 5619159 ~ 5627452 (+)
G49475 NA other upstream 2215316 4244528 ~ 4246227 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other upstream 2221670 4199939 ~ 4239873 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other downstream 391268 6863356 ~ 6941978 (+)
trnae-cuc NA other downstream 512102 6984190 ~ 6984261 (+)
c6h9orf3 NA other downstream 1258596 7730684 ~ 7884058 (+)
G50568 NA other downstream 1735254 8207342 ~ 8221162 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other downstream 1798160 8270248 ~ 8278756 (+)

Expression


Co-expression Network