LOC103046376 (LOC103046376)


Basic Information

Item Value
gene id LOC103046376
gene name LOC103046376
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 6350142 ~ 6354308 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231918.3
GCACAACTCAGCAGATCCCTGAGGAGTAAACATTCCCACACAGTGCTGAGGaagattttatattaaacatgccAGGAAACAGAGACCCGTACCAATTCCCCAGATACGAGAATGACCTTAACTTCACAGGGATTAAAGAGAGTCAGaaaccaccttttaaaaagcccaCCCACCTTGCACAGAATGATGAACCCTGGAGTCGTCTAAACGATACAGCAACCTTCTCCAGCATGAGGCGAAGTGTCCTCCATCATGACGAGTTTGCACCAAAAGACAGCCTGGACCTTCATCTGAGGTCTGTCTATGATAACCATGCAGACCTTCTCCTAAACAAGAACCAGACTGTGCTCCAGAGAGAGACGCTGATGGACCGTAGGGGAAAACACAATGAATCAGATGAACCAGAGAAGGAGCCTTTGAGAGTTTGGGTAAATCCTCAGAAAGCTTCAATATTCAGCATTGAGGGCTCGATAGAGTCTCCCCACAAAGCGGCTACAAACCGAGGCTACTCCAGAAAACACGACGGTGGCTTTTACTCAGCATGAGAAACTAAAGCTACAGAAGTAACAGAGCAGATTATCACAATAGTATATAGCTGCAGCCCCGGAGACTGCAGTTTTAGGACCCCGCAGTTTCAGGACCGCAGTTCTAGGACCCTATGTTTTCGCGACACTGCCACCTAGCGAAATGAACGACTTACTACACGTTAAATAGTATCACTTTAGCTAACTACTTACAaatttaaaggcttatttcacccaaatattaccaattcagctgactacttacactttttaatgtttatttcatcAAAATATTAGATAgatacatgcagcttttatattgaaGATGGTGCAAACATAACCTAATTAGTTATATGCATCTTGAAAAGCAGACAGGATAATACAAATACTTTTACAAATGACTTATATGGTACATCAGTATTgattaaataagtaattaacGTTACACCAAAGACATTAGGCTAACGTTACTCTGATTTAATGTACTGAAACGTAGTGAACATATTCTTTGTCATCTTTTATATTTCAATCTATGTGCTAGGCAGAACTAATAACCATATCGCGCTAtgctttcattaaaaacataactTACAGGCTAATAGATGTTTTAAAGCAAGCTATCCTAGACTAACAAGTAATGTTAGGTGATTGTAATGCCTTTTAGGCTAACGTTAGATATACAGTCACAATATGTGTAGATTACATTGATATCCAATTCAAAACAtctgaatattttaatacattaaatgtaGGTCACAATTTGATTCACATTCCGACTGTAATCCATCGTGTCCAAGACCACTTTGTTTTAGGTGGCAGTGTCGCGAAAACATAGGGTCCTAATACTGTGGGGTTCTAAAACCGCAGTCACCGAGGCTGCAGCTTTACCCTTCTCGGTTATCAGGGACAAACACTGCCATATAGCTACTACATATGTTTAAAATCAAATCTGACTACAACCTGCAATTTCTGAACTCAAAATAAAACGGCACATACAAAATATGGA

Function

NR:

description
uncharacterized protein C1orf194 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231918.3 True 1530 mRNA 0.39 5 6350142 6354308

Neighbor

gene id symbol gene type direction distance location
lhfpl5 lhfpl5,lhfpl5b,LOC107591869,LOC107745833 coding upstream 99539 6246229 ~ 6250603 (+)
dclre1b NA coding upstream 422972 5919174 ~ 5927170 (+)
LOC103022582 adora1b,LOC103022582,LOC108414989,LOC107711940,LOC107680252,LOC107591868,LOC107550463,LOC105912002 coding upstream 437802 5891651 ~ 5912340 (+)
LOC111192754 NA coding upstream 568455 5770016 ~ 5781687 (+)
LOC103025805 pepa,LOC108442134,LOC108414658,LOC108265567 coding upstream 694456 5633087 ~ 5655686 (+)
LOC103046076 LOC103046076,LOC108442386 coding downstream 4187 6358495 ~ 6371015 (+)
LOC103037089 LOC108442388,LOC105023850 coding downstream 38516 6392824 ~ 6400833 (+)
LOC103043236 NA coding downstream 107235 6461543 ~ 6472088 (+)
LOC103041483 slc38a5,slc38a5b,LOC107745748,LOC107678718,LOC107549617,LOC107731265,LOC107668060 coding downstream 192261 6546569 ~ 6587345 (+)
was was coding downstream 235983 6590291 ~ 6601742 (+)
G50051 mapk14a,LOC106572737,LOC108442382,LOC108265726,LOC105023895,LOC103368176 non-coding upstream 53793 6287836 ~ 6296349 (+)
G50050 NA non-coding upstream 54894 6292421 ~ 6295248 (+)
G50036 srpk1,LOC107591832,LOC107745731 non-coding upstream 69212 6265929 ~ 6280930 (+)
G50025 NA non-coding upstream 98261 6179792 ~ 6251881 (+)
G50012 NA non-coding upstream 195120 6152577 ~ 6155022 (+)
G50071 rpl10a,LOC103141192 non-coding downstream 64476 6418784 ~ 6423352 (+)
G50092 tbc1d25 non-coding downstream 122267 6476575 ~ 6479992 (+)
G50135 NA non-coding downstream 143686 6497994 ~ 6499008 (+)
G50136 NA non-coding downstream 144761 6499069 ~ 6499432 (+)
G50138 nt5dc2,LOC108442396,LOC107745746,LOC107668043,LOC100380632,LOC107678756 non-coding downstream 145841 6500149 ~ 6504331 (+)
LOC103023397 NA other upstream 560877 5777052 ~ 5789265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 722690 5619159 ~ 5627452 (+)
G49475 NA other upstream 2103915 4244528 ~ 4246227 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other upstream 2110269 4199939 ~ 4239873 (+)
faf1 faf1,LOC107743872 other upstream 3198092 2982846 ~ 3152050 (+)
G50063 NA other downstream 17212 6371520 ~ 6376705 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other downstream 509048 6863356 ~ 6941978 (+)
trnae-cuc NA other downstream 629882 6984190 ~ 6984261 (+)
c6h9orf3 NA other downstream 1376376 7730684 ~ 7884058 (+)
G50568 NA other downstream 1853034 8207342 ~ 8221162 (+)

Expression


Co-expression Network