lhfpl5 (lhfpl5,lhfpl5b,LOC107591869,LOC107745833)


Basic Information

Item Value
gene id lhfpl5
gene name lhfpl5,lhfpl5b,LOC107591869,LOC107745833
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 6246229 ~ 6250603 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231924.3
TTGAGAaatttgaatttatttgttGAGAAATTTGTTCGAAGTTGTTAGAAATACTTTGGGATTTTtgagagaattttttttatcatttaaaaatatatgtttatattttttaactacaTTTCTGAGTAATTTTTAGGAcactttttctaattttttaaaacctttttcgAGTTTTTTTGTCATCTTTCTGGCTAGCTTTACTTCACCATCAACATGGAGAAAATGCTTCCAGCCCAAGAGGCTGCTAAAATATACCACACCAACTACGTGAGGAATGCCCGAGCTATCGGCGTGCTCTGGGCTATTTTCACGATCTGCTTCGCCATCATCACCATGGTGGTGTTCATCCAGCCGTACTGGATTGGCGACAGTGTGAACACTCCTCAGGCTGGGTACTTCGGTCTGTTCTATTACTGCATCGGTAACCCCATCACCTCGGAGCTGGTGTGTAAAGGGAGCGTCCTGGACTTCGCCTCTATTCCCTCAGGGGCCTTCAGGACCGCGCTGTTCTTCGTCGGGACCTCGATGCTGCTGAACGTGGGCACCATGGTCTGCTTCagcctcttcttcttctgtaaCGCTGCCAGCGTTTACAAGATCTGCGCCTGGATGCAGACAGCATCAGCGGTGTTGATGGTGATGGGCTGTATGATTTATCCGGACGGCTGGAACTCTGATGAGGTGAAGCGTATGTGCGGCGAGAGGACGGATAAGTACACGCTGGGTAACTGCACCATCCGCTGGGCCTACATCCTCGCCATCATCTGCATCCTGGATGCTCTCATTCTGTCCCTGCTGGCCTTCACTCTGGGAAACAGACAGGATAAACTGCTGCCTGATGACTTTGAGGTGGAAGGAGAAGGTAAGAGTCTGAGCTGTGTGATGGCCAGTATTACAGCACCTCGATTTATATAAACTAGACTAGCTAGTGTTTGGATGGCCGACAATTTGCtgcatatttacaaaaaaaaaaaaactttgacagCAACAAGACAAAAATACTATGACATGtgaaaaaatttgaatatcattgaaaagtaatGTGAAAcacatatatagatgtattacacacagagtgatc
>XM_007231925.3
TTGAGAaatttgaatttatttgttGAGAAATTTGTTCGAAGTTGTTAGAAATACTTTGGGATTTTtgagagaattttttttatcatttaaaaatatatgtttatattttttaactacaTTTCTGAGTAATTTTTAGGAcactttttctaattttttaaaacctttttcgAGTTTTTTTGTCATCTTTCTGGCTAGCTTTACTTCACCATCAACATGGAGAAAATGCTTCCAGCCCAAGAGGCTGCTAAAATATACCACACCAACTACGTGAGGAATGCCCGAGCTATCGGCGTGCTCTGGGCTATTTTCACGATCTGCTTCGCCATCATCACCATGGTGGTGTTCATCCAGCCGTACTGGATTGGCGACAGTGTGAACACTCCTCAGGCTGGGTACTTCGGTCTGTTCTATTACTGCATCGGTAACCCCATCACCTCGGAGCTGGTGTGTAAAGGGAGCGTCCTGGACTTCGCCTCTATTCCCTCAGGGGCCTTCAGGACCGCGCTGTTCTTCGTCGGGACCTCGATGCTGCTGAACGTGGGCACCATGGTCTGCTTCagcctcttcttcttctgtaaCGCTGCCAGCGTTTACAAGATCTGCGCCTGGATGCAGACAGCATCAGCGGTGTTGATGGTGATGGGCTGTATGATTTATCCGGACGGCTGGAACTCTGATGAGGTGAAGCGTATGTGCGGCGAGAGGACGGATAAGTACACGCTGGGTAACTGCACCATCCGCTGGGCCTACATCCTCGCCATCATCTGCATCCTGGATGCTCTCATTCTGTCCCTGCTGGCCTTCACTCTGGGAAACAGACAGGATAAACTGCTGCCTGATGACTTTGAGGTGGAAGGAGAAGGAAAGGCCTGAATCCAGAAGAGCTTCAGGTACACAGGAAGTGACTGATTCACTTATAGGATCTCATTATGAAGAAATGTGGCCAGTTTGTTTAATGCATCCAGTGGACACACTTTTGGAACACACTTCTCAGACACAGGAGTTTGAGTTTGGAGGCCACCACCATACCATGAAGAATATGTAGCATGATCATTGCAGTATGATTAGGTAATAATTCTGTCTGGTAATTAGATATTATAAGACAGTTTTAGTGCATTTACTGCCTCCTACAGGCTACAGGTCATGTTTGCTAAATCTTAATTAATGCtcctataaaacagaaaaacagaatacaaGCATTAAACTGGAGCAGTCCTTTGCTAATTTTTATGTTGGCAGAAAAATGCAATAATTTTTGTTTCATAAAAGGTGGTTTCAGTTGAATGAATTTGACGCATTGAGTTAGGGGTAGGTAGACCCGTCAAAATACTTATCGATTTatcatacattcatacacataTTTAGATAGgccctcaattttttttcctctggtgtgtcaactttgtttaaatgttttgtcagtatttttgttatttatttaggatattaaaattgttttattacaataacaatatctgaatattcttaagaatttattaataagaaatttaaaagggtgtaaataataatgtgttaatatgttttttgtaaTCATCATATTCCTGGCTTAAATGGTCATAAAATGACTACAATATGA

Function

symbol description
lhfpl5b Acts upstream of or within neuromast hair cell morphogenesis. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in neuromast and neuromast hair cell. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 67. Orthologous to human LHFPL5 (LHFPL tetraspan subfamily member 5).
lhfpl5 Predicted to be involved in detection of mechanical stimulus involved in sensory perception and sensory perception of sound. Predicted to act upstream of or within auditory receptor cell stereocilium organization and detection of mechanical stimulus involved in sensory perception of sound. Predicted to be located in stereocilium bundle. Predicted to be active in plasma membrane. Implicated in autosomal recessive nonsyndromic deafness 67.

NR:

description
PREDICTED: tetraspan membrane protein of hair cell stereocilia

GO: NA

KEGG:

id description
K23893 LHFPL; LHFPL tetraspan subfamily member protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231924.3 False 1081 mRNA 0.44 2 6246229 6249169
XM_007231925.3 True 1597 mRNA 0.40 3 6246229 6250603

Neighbor

gene id symbol gene type direction distance location
dclre1b NA coding upstream 319059 5919174 ~ 5927170 (+)
LOC103022582 adora1b,LOC103022582,LOC108414989,LOC107711940,LOC107680252,LOC107591868,LOC107550463,LOC105912002 coding upstream 333889 5891651 ~ 5912340 (+)
LOC111192754 NA coding upstream 464542 5770016 ~ 5781687 (+)
LOC103025805 pepa,LOC108442134,LOC108414658,LOC108265567 coding upstream 590543 5633087 ~ 5655686 (+)
rbm15 rbm15,LOC107731203,LOC107680058 coding upstream 717165 5523809 ~ 5529064 (+)
LOC103046376 LOC103046376 coding downstream 99539 6350142 ~ 6354308 (+)
LOC103046076 LOC103046076,LOC108442386 coding downstream 107892 6358495 ~ 6371015 (+)
LOC103037089 LOC108442388,LOC105023850 coding downstream 142221 6392824 ~ 6400833 (+)
LOC103043236 NA coding downstream 210940 6461543 ~ 6472088 (+)
LOC103041483 slc38a5,slc38a5b,LOC107745748,LOC107678718,LOC107549617,LOC107731265,LOC107668060 coding downstream 295966 6546569 ~ 6587345 (+)
G50012 NA non-coding upstream 91207 6152577 ~ 6155022 (+)
G50009 NA non-coding upstream 97806 6147450 ~ 6148423 (+)
G49980 NA non-coding upstream 316206 5927405 ~ 5930023 (+)
G49982 NA non-coding upstream 316974 5928476 ~ 5929255 (+)
G49942 NA non-coding upstream 421058 5824615 ~ 5825171 (+)
G50036 srpk1,LOC107591832,LOC107745731 non-coding downstream 15326 6265929 ~ 6280930 (+)
G50051 mapk14a,LOC106572737,LOC108442382,LOC108265726,LOC105023895,LOC103368176 non-coding downstream 37233 6287836 ~ 6296349 (+)
G50050 NA non-coding downstream 41818 6292421 ~ 6295248 (+)
G50071 rpl10a,LOC103141192 non-coding downstream 168181 6418784 ~ 6423352 (+)
G50092 tbc1d25 non-coding downstream 225972 6476575 ~ 6479992 (+)
LOC103023397 NA other upstream 456964 5777052 ~ 5789265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 618777 5619159 ~ 5627452 (+)
G49475 NA other upstream 2000002 4244528 ~ 4246227 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other upstream 2006356 4199939 ~ 4239873 (+)
faf1 faf1,LOC107743872 other upstream 3094179 2982846 ~ 3152050 (+)
G50063 NA other downstream 120917 6371520 ~ 6376705 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other downstream 612753 6863356 ~ 6941978 (+)
trnae-cuc NA other downstream 733587 6984190 ~ 6984261 (+)
c6h9orf3 NA other downstream 1480081 7730684 ~ 7884058 (+)
G50568 NA other downstream 1956739 8207342 ~ 8221162 (+)

Expression


Co-expression Network