dclre1b


Basic Information

Item Value
gene id dclre1b
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 5919174 ~ 5927170 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231929.3
CGTGCGGAAACAGGTTTGTTTTGGCGGCTCAAACGAATGAAAGaaagcagagagcagagcagttTACTGTACGGGTTAAGAGCCGAGATTATCTCAGAATATGAGCCTCAGAATAAGTCTGTAACTGTTAGATTTCCAGATCTGTAGCTATAAAGAATAAAGGCCGCAAACGCGCAGAGCTGCAGCTGCCAGAGACCACCGCTGTCTGCACCAGTGCAGACCCTGCAGCAGCTGAACATAGCCAGCTAGCCTAGCATAACACAGGCAGCACCAGGGCTAGATTACTTGCTATTTTAGCTACCGCtagctttgtttttttcatctctgaaccaactaacattttattaatattcttagaaaaactgtaaaaatacaaacgAACCTTAATATTAACCATTGTTTTTGAAGATATCTAACGCTAGCAAGCTAATATTACAGCCTGggccagttagctagctaaagctaatgacaaaaacaaaagcagttCTCCGTTTAAATAACCTATAACTTATAACAGCTAACTAAATAGATCATATAAGAAATATTAGCTAAATAAttgagttagctaactagctatcttTATTGGTTAGATAAGCTGTTAGAATGTTGGGTTGATCTCAATCTATAACTAACAATCTATAactagctttgttttttttttcatgtctgaAACAACtcacattatattaatattattagcaaACATGTACAAATATGTAACTTACCTTTATATtaatccttgtttttttttgcagatagCTAAGTTAACTCTAGCTAACTTACCTATGTAATATTGCAGCCTGGACCTAAATAGCCTGGTAACTAACTAGATAACTAAACAGACCATATAAGGGATATTAGCTAGATAATTGAGTTAGGTAACTAGCTATCTTTTTATTAGTTAATtattagttaactagctaagctagctagctaatattacagCCTGGGCCTAACTATGTTAGCCTGGTAACtaactagctatctagctaattaAGTATACCATATAAGGAATATTAGCTAGATAATtgatttagctaactagctatatttattaggtaattattagttagcttagctagctaggtaatATTACAGCCTAGGCCTAACTATGTTAGCCTGGTAACTAAttagctatctagctaattaAGTATACCATATAAGGAATATTAGCTAGATAATTGAGTTAGCTCACTAGCTATATTTATTAGGTAACGTTAAgtattagttagctaagctagctaggtaATATTACAGCCTAGGCCTAACTAGCTTGGTAACTAACTAAGCTAACTAGGTAACTATCTAGCTAACTAAATAGACCGTATAATAAATATTAGCTAACTAATTGAGTTAGCTAACTTGCTATCTTTTTATCAGTTAGTTATTTGTTAGCTAAGCAAGCTAGCTAAATATTACAGCCTGGGCCTTACTAGCTTGGTAACtaactagctatctagctaactaAATAGATCATATAAGGGATATTAACTAGATAATTGAGTgaattagctaactagctatctttttattagttagttattagttaactagctaagctagctagctaatattgcagCCTGGGCCTAACTAGGTTAGCTTGAAAACTAACTAGCTATTTAGCTAAGTAAATAGAACACATGAGAAATATTAGCCAAATAACTgagttagctaagttaactaACTGTCTTTACTAGCTAGTTATGTTAGAAAGTTTAACTTAGTTATATTAATCTAATTACTAGCTTTCTTTTTTCATGTCTGAAATAACTGACATTTTATTAGTATCATTAGCAAACGGGAAAATATGAACCTTCGTAATAATTCTTGTTTTCTGCAGATAGCCAAcataaagctagctagctaataataCAGCTTGGGGCAGTTAGCCTTTGCTAGCTAAAGCTAATGACAAAGACAAAAGCAGGGCTCTGTGTAAAATAACCTAGGTTAAATAGCTATAGTTACAACAGCCAAGTTAgccaactagctagctaaatagctCAGattaggaatatatatatatatattaggaatatagctaagctagctatcttttttagttagttaacctaTGTTAGGATGTTTGGTATTAACTAGTCTAACTAGTGGTTAAATGGCTGCTATAAACACgtggttagctaactagctaaggtACAGCGTTAACTAAATGGCCTGAGCCCCGCACTGCCTGCCTTAGTCTCCACATGTTTCTGTAGTTAACTAAAGATGAACGGGAAAGTTATTCCTCACACCCCCATCGCTGTTGACTTTTGGCAGCTGAGAAAGTGCCACCATGTCCGGCTGTTCTTCCTCTCCCACATGCACACTGACCACACCTGCGGCCTCACCTCCACCTGGAGCAACAGACCCATCTACTGCTCACCTGTCACTGCCAAACTCCTACAGCTCAAACTGCAGGTGAAGGAAAAATGGATCCATGCTCTGGAGGTTGGAGAAGCGCACATGTTGCCGTTGGATGACATTGGGAAAGAAAAACTGACCGTCACTCTTATTGACGCTAACCACTGTCCCGGGGCAGTGATGTTTTTCTTCGAGGGCTACTTTGGTACTATTCTTTACACTGgAGATTTTCGCTACACTCCGTCTATGCTGCGTGAGCCATGTCTGAGGAACAACACGACCATAGACGTGCTTTATCTGGACAACACTAACTGTGACCCAACGCGCTCTCTTCCTTCTCGACAGCGAGCCTGTCAGCAGATTAAAGAGATCATACGAAGCCATCCAAACTACACTGTGGTCATTGGTCTCTATGCTCTAGGTAAGGAGTCTCTGCTGGTGCAGTTGGCGCTGGAGTTTAAGACGTGGGTGGAGGTGGATACGGAGCGTCTGGAGACTCTGCGTGTGCTGGAGCTTCCGGATGTGTTCACCACAGAGCCTGGTGCCGGGCGCATCCGTGCAGTGTCTCAGTCCGAGATCACTGCCTCTAACCTGCTGGCCTGGAATAAGGAGCAGCCCACCATGGCCATACTCCCCACCAGTCGGCCTGTGGTGTCCTGCCACCCGAACGTCTATGTGGTGCCTTACTCAGACCACTCCTCCTACCAGGAGCTGGAGGACTTTGTCTCGGCTCTGCGGCCGATATCGCTGGTGCCCATCGTGGGCAGCTGCATGCCTTACTTCTCCGCCCTCCTGAGTCCACGGAGGAAGCGCAGGGACGTGGTGGTACCAGAATCAGTACAGAACTACATGACGTCTAAGATCAGCGTTCAGACTTTCGGTATCAGCACGGCTTGTGCGCACCACCGTCCGTTGCGCTCAGTGCCTCGAGGGGTGGTGTTTGACTCCCCCAGACAGAGACCCAGAAGCTCCAGGTCTGATGACGCTGACTCCAGTGCTATGGACGTGGATAATGATGAGGAGGATGATGTTGCTTTAGAAGTAGATGACTCTGAAGCAGACGTCAGCTCAGACTGCATCTTATTGGACATGAGCTCTGATCTCACTCATGGTATGACCACGCCACTACGCAGAGGTCTAGATCTGGTTCTAGTCCCGTCCGATGACGACTCCACTGTCGACGGCCTCATCGATGTGAACGAGTCCCTCCTCGCCATTCAGAACATCAAGTCTCCCAGTACTAAAAGCACCAGCGAGACTGAGAGCCTGACCAGTGCCACTGCTCTGAGCCCTCACTTTAAAAACATCCAGAAGAAGAGAAGCCCCCAGATGGGCAGCACTAACACAAGAGTGATGAGCTCAGCGATGGACAGCATCGACCTTCATGACAGCACCTGTATGACGGCCTCAGCGGCTTCCACACCACCCGAAACACAGCCCGAGACTTCCAGTCAGTCTTACAGGAACGAGAGggagaggctggagcagtgggtacTTAACAACCTCACTTTTCCAGAGGAGGAATTCAGAAGTCAGTATGGGATTGTTCAAGGTTTACACAAGCTGTATCCCCTCGCTCCAATCAACGTGCCAAAACCAGAAGGTGATCCTTTAGAAGCTGCAATTCAGAGATTGAAGTCAAAATAGGAAATAATGTGAACGCAACCACATGTGGTATTGTAAATTATCATGCTGCTTTCATCACACAGCCTTGGTATTAACTAGGAATGCTCTGAATGGAACGTATTTGgacaaaaatcaacaaaattaagcatttatatgATGgccaacatcttttttttttttgcaagtttttattacatttgcCACTATTGAATAAATGACATAGcctaaatatatacagctctggcaagagaccacttcagtttgtgaatcagtttctctgattttgc

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0031848 protection from non-homologous end joining at telomere biological_process
GO:0031860 telomeric 3' overhang formation biological_process
GO:0031627 telomeric loop formation biological_process
GO:0000781 chromosome, telomeric region cellular_component
GO:0005813 centrosome cellular_component
GO:0008409 5'-3' exonuclease activity molecular_function

KEGG:

id description
K15341 DCLRE1B, SNM1B; DNA cross-link repair 1B protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231929.3 True 4277 mRNA 0.42 5 5919174 5927170

Neighbor

gene id symbol gene type direction distance location
LOC103022582 adora1b,LOC103022582,LOC108414989,LOC107711940,LOC107680252,LOC107591868,LOC107550463,LOC105912002 coding upstream 6834 5891651 ~ 5912340 (+)
LOC111192754 NA coding upstream 137487 5770016 ~ 5781687 (+)
LOC103025805 pepa,LOC108442134,LOC108414658,LOC108265567 coding upstream 263488 5633087 ~ 5655686 (+)
rbm15 rbm15,LOC107731203,LOC107680058 coding upstream 390110 5523809 ~ 5529064 (+)
alx3 alx3 coding upstream 405503 5496669 ~ 5513671 (+)
lhfpl5 lhfpl5,lhfpl5b,LOC107591869,LOC107745833 coding downstream 319059 6246229 ~ 6250603 (+)
LOC103046376 LOC103046376 coding downstream 422972 6350142 ~ 6354308 (+)
LOC103046076 LOC103046076,LOC108442386 coding downstream 431325 6358495 ~ 6371015 (+)
LOC103037089 LOC108442388,LOC105023850 coding downstream 465654 6392824 ~ 6400833 (+)
LOC103043236 NA coding downstream 534373 6461543 ~ 6472088 (+)
G49942 NA non-coding upstream 94003 5824615 ~ 5825171 (+)
G49941 NA non-coding upstream 99891 5818963 ~ 5819283 (+)
G49915 NA non-coding upstream 200914 5705699 ~ 5718260 (+)
G49901 NA non-coding upstream 252516 5665939 ~ 5666658 (+)
G49868 NA non-coding upstream 312574 5606003 ~ 5606600 (+)
G49980 NA non-coding downstream 235 5927405 ~ 5930023 (+)
G49982 NA non-coding downstream 1306 5928476 ~ 5929255 (+)
G50009 NA non-coding downstream 220280 6147450 ~ 6148423 (+)
G50012 NA non-coding downstream 225407 6152577 ~ 6155022 (+)
G50025 NA non-coding downstream 252622 6179792 ~ 6251881 (+)
LOC103023397 NA other upstream 129909 5777052 ~ 5789265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 291722 5619159 ~ 5627452 (+)
G49475 NA other upstream 1672947 4244528 ~ 4246227 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other upstream 1679301 4199939 ~ 4239873 (+)
faf1 faf1,LOC107743872 other upstream 2767124 2982846 ~ 3152050 (+)
G50063 NA other downstream 444350 6371520 ~ 6376705 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other downstream 936186 6863356 ~ 6941978 (+)
trnae-cuc NA other downstream 1057020 6984190 ~ 6984261 (+)
c6h9orf3 NA other downstream 1803514 7730684 ~ 7884058 (+)
G50568 NA other downstream 2280172 8207342 ~ 8221162 (+)

Expression


Co-expression Network