LOC103034603


Basic Information

Item Value
gene id LOC103034603
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 7123848 ~ 7130581 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231965.3
TATCCCATCTTTCATCTAAATCACAGCAATTTCCCAACTCACTGAGCCTGACACAGTCACTGTGCTAACAGAGCCAGATTCAATACTGCCacacttctgtccatttagtgGCAGAGGGGCGGGGTCTATGTAAATAGGGTCACTCAGGGCTTTATTAAGTGGCTGTGGGCACCAGTGGTCAGACCTCAGGAACCTGCAGAACATCACCACAACAAGAGGACACTTAACACACTTCAGCCTGCACCgcttctgtctttcttcagtccttttttttattccaggtTTTTTACTAttctattttctcttttttttaccagggCAGACTAACAGGAATGTGTGATGGGTGGAGTTGGCTTTAAAGACTTTTTCTCTAAGTGCTGCTGACTGcagtttttgattatttttgtatttctttaacttttGAACTGATTTTTGCTCAAAAAAGCAGGTTCTgttcattttttctcttttttgggcTCTGGATGAGCACCTGACATCAGTGAAGATGCTGTGGTCAGATTTCCTCAGCCCACTCCTGTTCCTGAGTGCTGCTGTGGCTGCGGCTAACGCTTTTGGCTCTTACAATCCCAATCCCAACCGTTTCAGCCTTTACAAGTCCGGGCCCAGCCCTCACTATAGCTCTGGGAAACCCACTGCAAGACACAAAAACCACTGTGCGTATGTAGTAGAGAAGAGTGTGTCCTACACTATTCAGGATGGAGTGGCTCCTTTTGTGAAGGCAGAGTATAACAAGTGTACATGGAGCAAGAAATGTCCAAAACTAAAGTATCGGATGTTCTACAAGCCAATGTATAAAGTGATCCACAAGACCATGACTGAGTTAGAGTGGCGCTGTTGTCCTGGATTCACCGGTGTTGGCTGTAATGCTGGACCTGCAGCTTATGGAATGAAATCAATGCCCCCATTTAAAGGTTCTATGCCCTCCCAAAAGGGTCCCATGCCCTCTAGTAAAGGTCCTCAGCCGTCTATGAAAGGGCCGATGCCTCCTTTCAAGGGCCCAAGGCCTGCTTACAAAGGATATACGCCCTCTTATAAGGGTCCATCCATTCCGTATAAAGGCCCAATGCCTTCCTATAAAGGCCCGGTGCACCAACCAAGCTACAAAGGAAACCCCTGGGAACAACCCCATACCCCAACTGGTGCAATGGGTGGTGGCTACCCTGGCTATAATATGGCACCTTCCTATCCAGAAACCCCATTTGAGTCCGATCCTGATCTCCAGGAACCTGAGATGGGTCATATTGACACATTTCCAGAACAGCACATTCCTCTAACTGACGATCAAGATCCCGCACCTGATCCCATTCCAGATGATCATGAGCCAATAACAGACTACCAGGACCCATCTATTCCAGATCACCAGAGTTCAACTGTTCAACATCCAGAGGCAGAGCCGGTTCCTGAGGCACAGGCGCCCTCTGGTGACAGTGAGACAAACCCTGGTTCTGAAGAAGACAGTGCCGCAGCTGAGCGCTTAAACCGGATGGAAGAGGATGTGCAGCGACTCTCGCTTGGTCTGGAAACTCTGCGCGGGAAAGTGACTGGCTTGGAGGACCACTTGCGCACCTCACTCCGCGAGGATGCCAATCGCATGCTGTCTGCCCTCCTGTCTGCAGCTCCAGCCCCAGCTACAGCTCAACACTCTACTGTTGCTTTCGGGGACTTGCCTGGTGCAGCACCCGATATTGAGGGCATGGAAATGGTGGGGCAGTTTCCTAAGTTGGGTGAGCTGGCTGAGAAAGTGGAGGAGCTGCGTACTGAGCTACTGTCTAAGACCACAGAACTGGCAGAGTTGAGAGGAACAGTCCTAAGGCACAATGGAACCCTGCAGAGACTAACTGGTGGGGCTGCGAATCTGACAGGTGCTCAACAACCCCTAGAGACACTCGTGGAGGCAAAACTTGGCGAGACAAGAGTAGCCATCCTTGAGGGCTTTGAGAGGCGTGTAGAGAGTGTGGAGGACCGTTTAATGGGTCGCGCTACAGAAGTGCGCCTGCAGTGCAAGAAGGAGCTAATGGAGGGACAAGAGCACCTGCAGCAGGTCCTGAATAGCAGTTTTGCAGATTTGAGGAAGGAGTTTATGAAGTTCAATGGACAACTGCAAGGATTTGAACCTGGGAACCAGGAAGTCTGCTGCAGTGCAGTGTCAGGCTTGACCGAAAGGCTGGTTCTGGTTGAGGACTCAATGGATGGTTTGAACCAGTCCCAGTTACACCTTAGAGCTGAACTAGGAAGCCACAAGGACCATGTGGAGGGCATGATTGAGGGTAGACTGGGCTACGTGGAAGACAAGCTGAACAAAGCAGAGATGCAACTGGGAGATGTTGGCAGTGAAACATCGGTTAAGCTTGAGGCTTGTCTGGAGGCAAAGATGAAGGCTCTTGAAAATCGCCTCTTTGCAGCAGTGGAAGAGCTTGGCaatgccacagctccagctctgtTGGAAGGCCAGGCAGTGCCCACTTTAGAAACAGAGGTCGAATCCCTCAGGAAGAGGGTGGAGGTGGACGTAGACCGCTTTCAAAAGCAGCTCAGCTTACTGGAGCTTCTTTGTACTTCTTCTTGTGCCCCACAACCAGTTCTAACAGGGTTTGTCGCTCCACTGCAGACTCCAGAAGTAGAACTTAAGGGTGACCATCAAAACCTTAATGGACACCTCGACGCACAGACAGAACGTATGGACCGGCTGAATGCCACTCTGAACTCTCTGCTTGTTCACTTATcagagaaaaaggaagagacGGGTATTGAGGGCGAGTTGACTCTGCTAAAGGTAAATGTCCATTCTGTCAACCGCACGCTTTGTGGGCTGAAGGACACATTCGGACAAGTAATGCAAGAGATGGAGCATGCCAACCTCACTTGGCAGGACCGCGAGGAGAGGCTAGCACAACAAGTTAAAGGTGTGGTGCAGCTGGTTGGACGCCAAGCCTCCATGTTGGGCACGGGAGAAAGACGACTGACCCGTTTGAAGGGTGAGCTGCAGGATCTGCGCCGGAGGTTGGCTGCAGAGCTCCAGGGCTGCCGCTCCACTGCCCTTGGTGTCCAGAAAGAGGTGACCGAGGTTGGGGGGCGAGTATCCCGTGTGGAAGGTCAGTGTGGTGGCTTGGCAAGGTTGGCTGAAGATTTGGAGCTTATCCGAGGAGAACTCGACAAACAATCCGATGGGTACTTGTCTCAGGTCAACACCACCCTCATCAACCATTCCCTTCAGATATCGGAGCTTAAAAACGGACTCAAAAACTGCACTGGTTCCTCAGGCCTCGCACAGTCGTCAGATGACCACTTCTCGACAACGACTCAACCATGGGTAGAACCTCACACAGCTGAGCCAGTCTATCCAAGAGGAGACCAGTTTACAGACTCCACACAGTTAAGAGATGATCATGGATTTGGACAAGCTCCATAATGTGAAGAACATTACCTTAGAATGACTGATTTATTGACAAGCCTAGAAATTAATCTAATGCGACAAGCAATGCGTCTAATTCAAGACTCCTTAAAGTCCAAAAAGTTTACAGAAATTATGCCAAACTATTCTGAGGTAAAAgttgaatgtgtttttcttatgtttatattttttgtactttgtaTCAAAACTGTATGAGGGTGTATGTTGCTAGTTATATGTGAAATGTGTAATTGTTAAGAAATGTTCCAGGCACATGTGTCTAAAACAGACTGTCCGTTAaccttttttactttctgtatGTCTGTGAATTGTCTTACaatggcagtgtttttttgtgatgaCTTGTTTCtattaaaaagacaaattaaaaatataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231965.3 True 3809 mRNA 0.48 4 7123848 7130581

Neighbor

gene id symbol gene type direction distance location
LOC103037743 LOC108437573,LOC107549481,LOC107668067,LOC107731205,LOC107745762 coding upstream 84212 7026649 ~ 7039636 (+)
LOC103035560 NA coding upstream 163216 6941690 ~ 6960632 (+)
c6h6orf226 NA coding upstream 323483 6798654 ~ 6800365 (+)
LOC103040567 gpr173,LOC108265110,LOC107549979,LOC107678674,LOC107731146,LOC107549585,LOC105898994 coding upstream 352787 6748399 ~ 6771061 (+)
was was coding upstream 522106 6590291 ~ 6601742 (+)
LOC103033640 LOC108437579,LOC108265805,LOC107731248 coding downstream 111544 7242125 ~ 7336833 (+)
LOC103033322 LOC108437580,LOC107731173,LOC108266008 coding downstream 220088 7350669 ~ 7485744 (+)
porcn porcnl,LOC108437582,LOC108265978,LOC107549961 coding downstream 425776 7556357 ~ 7571558 (+)
csde1 csde1 coding downstream 443001 7573582 ~ 7596577 (+)
apex2 NA coding downstream 472438 7603019 ~ 7607872 (+)
G50227 NA non-coding upstream 41502 7003089 ~ 7082346 (+)
G50258 NA non-coding upstream 43707 7077233 ~ 7080141 (+)
G50253 NA non-coding upstream 51362 7066875 ~ 7072486 (+)
G50224 LOC108412504 non-coding upstream 127654 6985536 ~ 6996194 (+)
G50197 LOC108442380,LOC105898899,LOC107667993,LOC107549944,LOC108265139,LOC105418848 non-coding upstream 332151 6788872 ~ 6791697 (+)
G50439 NA non-coding downstream 809020 7939601 ~ 7942748 (+)
G50535 NA non-coding downstream 915120 8045701 ~ 8046053 (+)
G50550 NA non-coding downstream 971494 8102075 ~ 8102287 (+)
G50565 NA non-coding downstream 1071856 8202437 ~ 8203419 (+)
G50580 NA non-coding downstream 1171935 8302516 ~ 8302910 (+)
trnae-cuc NA other upstream 139587 6984190 ~ 6984261 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other upstream 181870 6863356 ~ 6941978 (+)
G50063 NA other upstream 747143 6371520 ~ 6376705 (+)
LOC103023397 NA other upstream 1334583 5777052 ~ 5789265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 1496396 5619159 ~ 5627452 (+)
c6h9orf3 NA other downstream 600103 7730684 ~ 7884058 (+)
G50568 NA other downstream 1076761 8207342 ~ 8221162 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other downstream 1139667 8270248 ~ 8278756 (+)
G50583 LOC108437602,LOC103398889 other downstream 1212359 8342940 ~ 8344514 (+)
G50889 grid2,LOC107556295 other downstream 2512793 9643374 ~ 9782721 (+)

Expression


Co-expression Network