npc1l1 (npc1l1)


Basic Information

Item Value
gene id npc1l1
gene name npc1l1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 33536304 ~ 33564707 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234217.2
GTCCCTTCTGATTGGCACTGTCTACATCAGGCCAGATAAGAAACTCTGCGCCATCGACGTCACGTGTGATTTCACAGAGACGGGGGCAGAAAGTTTCGCCTCCTTCTCCATTCCTTTCCACGTCACACATTTGGGATAGACGGGTAGACATTTATCTAGCCCTCACTTTCGTCAGACTCTCCATTGGATATAACACTCCAGTTCCCGCTCCTGCCGGACATTAAGTGGCAGAATGGGCGTCCACAGGAGGAGATGGGATAACACAATCACATTGCTGGCAATCGCTGCATGTCTGGTGTTCTCTGATGCTCAGCATGAACCTGGATTTTGTTCAATGTACGATGAATGTGGAACGAACCCCACTGTGTCCGGATCCTTGCTCAACTCAAGCGTACCCTGCAAAAATTATGGAGCGGCAAGACAAGTTGTTGGAGAGCACTACAAACTATTGAAGCAGGTTTGCCCCATGCTGGACCGGGGTGAGGGGCAAACATTTGCCTGTTGCTCCGTTCAGCAACTCATGTCCCTGCAGAGCAGTCTGACTCTGTCCAAAGCCGTGCTCCTGCGGTGCCCGTCCTGCGCTTACAACTTCGCCCACGTTCACTGTGTGACTACCTGCAGTCCAAACCAGAGCCAGACAATCAACATCACCAGAACTATTCCTGTCAACATTTCCGGAACGGAAAAAGAGGCCGTGGTCGCCTACCAAACCTACATTTCTACTGACTTCTCTGACGCGTCCTTTAGATCCTGTAAGAATGTGAGAATTCCGGCAACTGGAGGATTCGCCATCGCTACAATGTGTGGTCGATACGGTGCTAAGCTGTGTACCGCTCAGCGCTGGCTAGACTTCCAGGGCGACTCAAGCAACGGTCTGGCTCCCCTTGACATTGACTTCAGGCTCATACCACCAGAGCAGAGCGCAGATGTTCCAGCAGGAATGGTTGCTTATGCAGGGATGGTTCTGGGTTGTAATGAGACAACACCAACTGGAGGAAAAGAATGCTCCTGCCAGGACTGCGAGGACAGCTGCCCACCAGTTCCCCCACCAGGGCCTCCGCCCGGCCCCTTTATGATCCGCGACGTGGATGGGGTCCTCGTGATTTGCTCTattctcttcttctttattttactcATGTTCCTGGTTTACCTCATTGCTATTTGTTGCGATGGTAAAAAGTCAAAGAGGAGAAAGGACAAGAATGCTAATGAAGTAGACCACACCCTAAACCTGACAGTGCATCCCAGCGAGATTACATGCACTGACAAAGCAAGTCTGGCCACCCAAGAGTTCCTGGGATCGATGTTCCAGAGCTGGGGAACTGTAATGGCAAGACACCCGCTAAAGGTGATCTTTGCATCCGTGTTTGTTGTAGCAGCATTTTCGACTGGGATGATGAACATGGAACTCACAACCGATCCTGTTCAACTCTGGTCAGCTCCCAATAGCCGTGCCAGGCGTGAAAAAGACTTCCATGATGCCAATTTTGCCCCCTTCTTCCGTACTAATCAGTTGATTCTGACAGCTCCAGGCAGGCCCAGCTATATCTACGACTCCATACTCTTTGGCAGAACCAACTTCAGTGGCCTCATCTCTAAAGACCTAATTTTACAGCTGTTGGAGCTTCAGCAGAAAATCCAGGCTATCGAATTCTGGTCAGAAGAACTCAACAAAACTGCTTCCCTTAAAGATGTCTGCTATGCTCCTCTTAACCCGACAAACCCCTCTTTAACGGACTGTGCTGTCAACAGCCTACCTCAGTACTTCCAAAACAGTGTGGAAAATCTGAACGCAAAAGCTAACATGACTGAGCTCGGAGTGACTAAAGAAGTCGACTGGAGAGACCATTTCATTTACTGTGTGAACTCTCCGTTATCCTTTCAAGACATCACAGCACTCGACATGAGCTGTATGTCAGACTACGGAGGTCCAGTCTTTCCCTTCTTGGCTGTGGGAGGATATGAAGaTGAAGACTTTACCAACGCTGAGGCATTCATCCTCACCTTTTCTCTCAATAACTATGCACGAGATGACCCAAAGTTTAAAGTGGTGGAAAAATGGGAGTCCATGTTCCTAGAGATAGTTAAGGACTACCAGAACGATCCCAATACAAACTTCACATTCGCTTATATGGCTGAGAGGTCTTTAGAGGATGAAATCAACAGAACTACAGTGGAGGACTTCCCCATCTTCATGATCAGCTATGGAGTCATCTTCTTATACATCGCTATAGCTCTGGGAGAATACACATCCTTTAAGCGCATCCTGgtGGATTCTAAGATTGTGGTTGGGCTGGGTGGTATACTGATTGTCGGCTGCTCAGTCCTCACATCTATGGGCTTTTATGGCTGGGTTGGAATTCCTTCCTCGCTGATCATTGTGCAGGTGGTGCCCTTCCTCGTGCTCGCTGTTGGAGCTGATAACATTTTCATCTTTGTTCTGGAATATCAGAGAGATGAACGCCGGTCTGGAGAAACGAGAGAGGAGCAGATTGGCCGAGTTCTAGGAAGCGTAGCTCCCAGCATGCTTCTTTGCAGCTTGTCTGAATCTGTCTGCTTTTTTCTGGgCGCTCTCAGCACCATGCCTGCAGTGAAGACATTTGCGCTGTATGCTGCACTTTCTGTCTTAATTGACTTCCTGCTGCAGATGACAGCTTTTGTAGCTCTTCTGTCTCTCGATGCTCGGCGGCAGGACGCTAACCGCTATGATGTGGCCTGCTGCGTGAGAGTGAAgaacccacccccctccaaacCCAACCAGGGATTCCTCTTCCCGCTAATGAAGAAATACTACGCTCCTGCGCTGCTCTGTGGCTTTTCCAGAATAGTAGTGATGGTGGTGTTTCTCTTCATGTTCTGTGCTTCCATCTTCCTCATGTGCCATGTGAAGGTGGGCTTGGACCAGGAGCTGTCCATGCCAACTGACTCCTATATGCTCAGATACTTTGAATATCTGAACAAGTACTTTGAAGTTGGGGTGCCTACATACTTTGTGACGACAAAAGGATTCAACTTCTCCAGTTTGGCTGGGATGAACGCAGTGTGCTCCAGTGTAGGCTGTGACCAGTTCTCCCTCACTCAGAAGATCCAGTATGCTACGGAATACCCAGAGAGATCCTACATGGCTATCCCAGCTTCCTCCTGGGTGGACGATTTTATTGATTGGCTGAACCCTGGATCAAGATGTTGCCGTATTTACACCTCTGGACCTAACACGGGGAAATTTTGTCCAGCCAGTGAAAGTGCCTTTTTATGTTTGAGGAGGTGTATGCCACTCACAGAAGATGGGGTCGTGCGACCCAATGAGACAGAGTTCAACACATTTCTGCCCAGTTTCTTGGGTAACCGGCCAGACCTGCAGTGCCCCAAAGgTGGTTTGGGAGCTTATGACACAGCTGTGGTGGCTGACAACGTCACTGGGGAAATAGTAGcaTCACGTTTCATGGCCTATCACACCCCTCTGAAAAACTCTCAGGAGTACACAACAGCCCTGAAGATAGCAAGAGAACTGGCCCACAACATCACAATGGCCATGAGAGACATGAATGGGACAGATCCAGATTTTGAAGTTTTCCCTTACACTGTGACCTACGTGTTTTATGAGCAGTACCTTAGTATTGTGTACGAGGGGCTGGTGAACATCGCTCTGTGCCTGCTGCCCACCTTCATAGTGTGCTGTATTCTGCTGGGCATGGACCTGCTCTCCGGCCTCCTCAACCTGCTCACCATAGTGATGATCACTGTTGATACAGTGGGGGTTATGACACTGTGGGGCATCGACTACAATGCTGTGTCTCTCATCAATCTTGTGACGGCTGTGGGGATTTCGGTGGAGTTTGTGTCTCATATGACGCGTTCCTTTGCTCTCAGCACTTTACCCACGAGGGTGGAAAGAGCCAAAGATGCTACAGCTAAGATGGGCAGTGCGGTGTTTGCTGGCGTTGCTATGACAAACCTGCCCGGCATCATCGTGCTGGCGTTCGCAAAGGCTCAACTCATCCAGATTTTCTTCTTTAGACTGAACCTGGTCATCACTCTGCTGGGCATGGCGCACGGCCTTATCTTCTTGCCTGTGTTCCTCAGCTACTTCGGTCCTCCTTTGAATAAGGCTGTACTGCTGGAGGCCCAGAAGAAAAAAGCTCAAGAGATGGAATCACGCAACAAAACACTGACAACAAAACTATGACAACATGAGCTTTGAAAATAATGAGACTGGCATCAAATTAGAGTCCTTCCTCTGAGAcaggagtgtgtgttttgtttatttaaaaaggacATTATGCCAATACACACAAGTGCAATATAAGGGTCAGAGGAGCTGGACGGTAAACAATCTTGCCTTAGTTAGGGACAGTCTCACAGACAGGAATTAAACCTAGTCTTGAACTGCACAGCATTTAGAGAGGAGACCTCCTATTGAAAAGGACATTTAGTATAGGACTTTAGtataggcttaatccctgtctgagaaTCCAAACCTTAATGCTGCTCGGGCCTCGGTGGACAGCAGTTTGTGTTTGCCTGTTTGAATACACCTTATTCAGCGCTCACAGAGGTTGTTAACTTGGGGAAAATGTAAATAGTTTACATGATTGTCCCCAATCTAGTCGATCAGCTTGAACTTTGTACATGTTTCTAGATAACAGTATGTAATATAGTGGCAGAAACCACATAAGCTAGTCTTTTATAATAGAGATCGCTGAACTTGTGGAATATGAAGGAGTGGATTGGTTAAAACATCATTTTTGCAATATTGACTGCTTACCTCATACATCATATTTTATGTAAGAATTTTGTGTCTTTAGAGTAGCACTGACAATACAGGGCTAACAAAGCTaggttaaaaaacaacaacaaaagaaatcaTCTGCCAACCAAAACatctgtaaaaaacaaatcttGAATAAGAATGCGGAGAATAGTCAATAACTTGCCTTAATGTGCAGGCCTactgtaaaaaatgacaaaagaacAGCCAAGTTTCATCTTTACCTCAGAGTCGGACTCCTTGTGTGCACGGATGTCACAAATGTCGGTCATGGTGTAGAAAACGTATGGGAATTGAATAAAAACTGTGTCAGTATGATGTGTATGCAAGCAAAAAGGAGCTGGATTTGGCTGCTATCAGCTaaaaggttaggtttaggctaGTAGCTTAAGTAAAGAAGCAAAATATAGACAAAATAcatctgaattatttttttaaattaaggatTAGCTGTAAGTTATAACATTCTATATCAATAAAATGAATTGTTACTTTTATTAACTGTTATTTaatcaatttattatttagctaCAGCTCACAATTCCCACAGTGCTAATTGACAACATATACACTtccattagctagctagctacctagaTTAGGTCATGTGGCTTAAGAGCAAATCTAAAGCAAATTTCtcacaccaaacatgtcttggctgactGACTACATTTTGGgttaaactgtgtaaaaacacaataattgcTCAAAACATGGGTTCCTAGAATCTAGGTCTTCTTTAAAAGCCTTAATGATCCAGGCTTATTGAAACTCTTGTGCAATAGTTATTAGGAGGCTGTAGCTATAAAGGAGAAACTCAAGTGTGATGTAGACTTGGGGTTTAGTAAAACATGTTAACAAGTGTGAATATTTGTCAAATAGATCACATCTGTGGGCATAGCACTGccttatttttacaccattaacaagctcaaagtatctTCGCACtccattggtagaattctgagggccctaacatttaaaacaggtaTGACATTTAAATGACTGTTTAAATGCACAGTACCTAGAGGTAGTTCTTTGGGCACAGCCGTCTATAAATGAATCACGATGAGTTGACTGACCAGTATGAACAAATAGGTAACGTAGGGGAACAGTTTTCAGCTGCTGctgaaaatatttcaataatattcattaatttccactgaattaatttagcaatctgttcccctaacctcatttaaatatcagggccctcagaattctaccaacaAAGTGTGGAGctctttgagtttgttaatggtgtaaaaataggcATTTCTTTGTATGGGCAATGCCACGCCACGCCACGCCCCTATTACTAGCACTGTATGCAGTTTTTGTTAATGCTGAGGGTGAATGAAGGTGGGCTATTCGACAATAGTTTCTATTGGTTATTATGTTTCACTAAACCCCAAGTGCATTTTATACTTGTTCTCCTTTAAGAACTGAACACTGTATGTTTTCTTCAACATTCTTGCCTTCTCCTGTCCACCTAGTAATCTGGATTACTATGGCGCGACACACGTATTTGCTGCATCACTTATGGACTCTACAGTTTTCCCATAATAGCGGAAAACTAAAATTACAAGAATGTTTcagatttctctcattttttacacatattttacactgactatttgttttagttttttttttgtcaaatgtactgtgttttatttaattccaTTATACTTGTGTGTACTAGTGTGTGGGGAAATTAGAGAACAATACACTGAACACTCCAGAGAAAAGAAAGTAATATCTTCTGTTTGTATCACTGAATGATTATATGAAATGCACTTTGGGGATTTTTACATcatgtgtctgtgttttattgtgtcAACAAACATGCAATTCCTAAATGTGCCACAGAATGAATTTATTGAGTATTAaagttgtttatatatatacatagacttgGTTTGACAGCCCTGAACACAACTCCGTTATGTAACCTCAGACTGAAAGGTGCTGATtttatgattatattttatGGAAGGC

Function

symbol description
npc1l1 Is expressed in liver. Orthologous to human NPC1L1 (NPC1 like intracellular cholesterol transporter 1).

NR:

description
Niemann-Pick C1-like protein 1

GO: NA

KEGG:

id description
K14461 NPC1L1; Niemann-Pick C1-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234217.2 True 6769 mRNA 0.44 19 33536304 33564707

Neighbor

gene id symbol gene type direction distance location
myl7 myl7,LOC107554405,LOC107753162,LOC107703146 coding downstream 46354 33485649 ~ 33489950 (-)
LOC103025548 tbc1d10aa,LOC108441901,LOC107703173,LOC107753095,LOC107554420,LOC107657331,LOC107712481,LOC107550973 coding downstream 53540 33462386 ~ 33482764 (-)
LOC103025241 aplnra,LOC108441910,LOC107753098,LOC107712463,LOC107550977,LOC107703172,LOC107554406,LOC107687998 coding downstream 129632 33404530 ~ 33406672 (-)
LOC103024912 hpd,hpdb,LOC108441909,LOC107723232 coding downstream 164633 33361821 ~ 33371671 (-)
trnaa-agc_13 NA coding downstream 175863 33360369 ~ 33360441 (-)
adgrd2 LOC108414364 coding upstream 875363 34440070 ~ 34468155 (-)
LOC103025191 LOC103025191,LOC108426622,LOC108265895 coding upstream 970589 34535296 ~ 34539056 (-)
LOC103024553 si:dkey-90l8.3,LOC103024553,LOC108426648,LOC107698086,LOC107714563,LOC107556214,LOC107563853,LOC108264996,LOC105889949 coding upstream 1014110 34578817 ~ 34586862 (-)
LOC103024249 LOC108426649 coding upstream 1036705 34601412 ~ 34617121 (-)
LOC103022681 NA coding upstream 1066597 34631304 ~ 34639803 (-)
G56189 NA non-coding downstream 155677 33377159 ~ 33380627 (-)
G56186 NA non-coding downstream 169691 33358765 ~ 33366613 (-)
G56172 NA non-coding downstream 200208 33255008 ~ 33336096 (-)
G56148 NA non-coding downstream 309716 33220492 ~ 33226588 (-)
G56137 NA non-coding downstream 357725 33178195 ~ 33178579 (-)
G56287 NA non-coding upstream 178189 33742896 ~ 33743734 (-)
G56293 NA non-coding upstream 186195 33750902 ~ 33756692 (-)
G56317 NA non-coding upstream 706878 34271585 ~ 34284706 (-)
G56323 NA non-coding upstream 731005 34295712 ~ 34296080 (-)
G56326 NA non-coding upstream 764028 34328735 ~ 34329529 (-)
LOC103023237 NA other downstream 358654 33149074 ~ 33177650 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other downstream 734144 32772027 ~ 32802160 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other downstream 1796083 31731464 ~ 31740221 (-)
LOC103027498 LOC108411246,LOC106585447 other downstream 1845496 31635481 ~ 31690808 (-)
LOC103046862 LOC108410878 other downstream 3601874 29896515 ~ 29934430 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other upstream 1526023 35090730 ~ 35108420 (-)
acaa2 acaa2,LOC107671002 other upstream 1720715 35285422 ~ 35293421 (-)
c6h22orf39 NA other upstream 1731634 35296341 ~ 35299750 (-)
LOC103038782 slc25a25a,LOC108430373,LOC107754405,LOC107671014,LOC107699669,LOC107560063,LOC107559565,LOC107752985 other upstream 1757278 35321985 ~ 35332434 (-)
G56638 NA other upstream 1856123 35420830 ~ 35458874 (-)

Expression


Co-expression Network